| Year |
Citation |
Score |
| 2020 |
Sarkar H, Srivastava A, Bravo HC, Love MI, Patro R. Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data. Bioinformatics (Oxford, England). 36: i102-i110. PMID 32657377 DOI: 10.1093/Bioinformatics/Btaa448 |
0.352 |
|
| 2020 |
Kancherla J, Yang Y, Chae H, Bravo HC. Epiviz File Server: Query, Transform and Interactively Explore Data from Indexed Genomic Files. Bioinformatics (Oxford, England). PMID 32618995 DOI: 10.1093/Bioinformatics/Btaa591 |
0.395 |
|
| 2020 |
Olson ND, Kumar MS, Li S, Braccia DJ, Hao S, Timp W, Salit ML, Stine OC, Bravo HC. A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures. Microbiome. 8: 35. PMID 32169095 DOI: 10.1186/S40168-020-00812-1 |
0.337 |
|
| 2019 |
Williams J, Bravo HC, Tom J, Paulson JN. : Simulating longitudinal differential abundance for microbiome data. F1000research. 8: 1769. PMID 32148761 DOI: 10.12688/F1000Research.20660.2 |
0.378 |
|
| 2019 |
Cui Z, Kancherla J, Chang KW, Elmqvist N, Bravo HC. Proactive Visual and Statistical Analysis of Genomic Data in Epiviz. Bioinformatics (Oxford, England). PMID 31782758 DOI: 10.1093/Bioinformatics/Btz883 |
0.389 |
|
| 2018 |
Kancherla J, Zhang A, Gottfried B, Bravo HC. Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets. F1000research. 7: 1096. PMID 30135734 DOI: 10.12688/F1000Research.15433.1 |
0.381 |
|
| 2017 |
Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Bravo HC. Smooth quantile normalization. Biostatistics (Oxford, England). PMID 29036413 DOI: 10.1093/Biostatistics/Kxx028 |
0.337 |
|
| 2016 |
Manimaran S, Selby HM, Okrah K, Ruberman C, Leek JT, Quackenbush J, Haibe-Kains B, Bravo HC, Johnson WE. BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinformatics (Oxford, England). PMID 27540268 DOI: 10.1093/Bioinformatics/Btw538 |
0.387 |
|
| 2016 |
Wagner J, Paulson JN, Wang X, Bhattacharjee B, Bravo HC. Privacy-Preserving Microbiome Analysis Using Secure Computation. Bioinformatics (Oxford, England). PMID 26873931 DOI: 10.1093/Bioinformatics/Btw073 |
0.354 |
|
| 2015 |
Sharmin M, Bravo HC, Hannenhalli S. Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer. Bmc Cancer. 16: 88. PMID 26868017 DOI: 10.1186/S12885-016-2128-1 |
0.328 |
|
| 2015 |
Chelaru F, Bravo HC. Epiviz: a view inside the design of an integrated visual analysis software for genomics Bmc Bioinformatics. 16: 1-14. PMID 26328750 DOI: 10.1186/1471-2105-16-S11-S4 |
0.374 |
|
| 2015 |
Dinalankara W, Bravo HC. Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis. Cancer Informatics. 14: 71-81. PMID 26078586 DOI: 10.4137/Cin.S23862 |
0.377 |
|
| 2015 |
Okrah K, Bravo HC. Shape analysis of high-throughput transcriptomics experiment data Biostatistics. 16: 627-640. PMID 25964664 DOI: 10.1093/Biostatistics/Kxv018 |
0.39 |
|
| 2015 |
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, et al. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 12: 115-21. PMID 25633503 DOI: 10.1038/Nmeth.3252 |
0.334 |
|
| 2014 |
Chelaru F, Smith L, Goldstein N, Bravo HC. Epiviz: interactive visual analytics for functional genomics data. Nature Methods. 11: 938-40. PMID 25086505 DOI: 10.1038/Nmeth.3038 |
0.357 |
|
| 2013 |
Paulson JN, Stine OC, Bravo HC, Pop M. Differential abundance analysis for microbial marker-gene surveys. Nature Methods. 10: 1200-2. PMID 24076764 DOI: 10.1038/Nmeth.2658 |
0.412 |
|
| 2012 |
Shi W, Wahba G, Irizarry RA, Bravo HC, Wright SJ. The partitioned LASSO-patternsearch algorithm with application to gene expression data. Bmc Bioinformatics. 13: 98. PMID 22587526 DOI: 10.1186/1471-2105-13-98 |
0.614 |
|
| 2011 |
Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP. Increased methylation variation in epigenetic domains across cancer types. Nature Genetics. 43: 768-75. PMID 21706001 DOI: 10.1038/Ng.865 |
0.318 |
|
| 2011 |
Paulson JN, Pop M, Bravo HC. Metastats: an improved statistical method for analysis of metagenomic data Genome Biology. 12. DOI: 10.1186/Gb-2011-12-S1-P17 |
0.394 |
|
| 2010 |
Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, Johnson WE, Geman D, Baggerly K, Irizarry RA. Tackling the widespread and critical impact of batch effects in high-throughput data. Nature Reviews. Genetics. 11: 733-9. PMID 20838408 DOI: 10.1038/Nrg2825 |
0.358 |
|
| 2010 |
Wu H, Irizarry RA, Bravo HC. Intensity normalization improves color calling in SOLiD sequencing. Nature Methods. 7: 336-7. PMID 20431543 DOI: 10.1038/Nmeth0510-336 |
0.331 |
|
| 2010 |
Bravo HC, Irizarry RA. Model-based quality assessment and base-calling for second-generation sequencing data. Biometrics. 66: 665-74. PMID 19912177 DOI: 10.1111/J.1541-0420.2009.01353.X |
0.359 |
|
| 2009 |
Bravo HC, Wright S, Eng KH, Keles S, Wahba G. Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. Journal of Machine Learning Research : Jmlr. 5: 41-48. PMID 22081761 |
0.499 |
|
| 2009 |
Eng KH, Bravo HC, KeleÅŸ S. A phylogenetic mixture model for the evolution of gene expression. Molecular Biology and Evolution. 26: 2363-72. PMID 19602540 DOI: 10.1093/Molbev/Msp149 |
0.408 |
|
| 2009 |
Bravo HC, Lee KE, Klein BE, Klein R, Iyengar SK, Wahba G. Examining the relative influence of familial, genetic, and environmental covariate information in flexible risk models. Proceedings of the National Academy of Sciences of the United States of America. 106: 8128-33. PMID 19420224 DOI: 10.1073/Pnas.0902906106 |
0.542 |
|
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