Rex R. Malmstrom, Ph.D. - Publications

2006 University of Delaware, Newark, DE, United States 
Ecology, Oceanography, Microbiology

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Blow MJ, Clark TA, Daum CG, Deutschbauer AM, Fomenkov A, Fries R, Froula J, Kang DD, Malmstrom RR, Morgan RD, Posfai J, Singh K, Visel A, Wetmore K, Zhao Z, et al. The Epigenomic Landscape of Prokaryotes. Plos Genetics. 12: e1005854. PMID 26870957 DOI: 10.1371/Journal.Pgen.1005854  1
2016 Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, et al. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications. 7: 10476. PMID 26814032 DOI: 10.1038/Ncomms10476  1
2016 Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, ... ... Malmstrom RR, et al. Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. The Isme Journal. PMID 26744812 DOI: 10.1038/Ismej.2015.241  1
2014 Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan LK, Martinez-Garcia M, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F, ... Malmstrom R, et al. Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. The Isme Journal. 8: 2503-16. PMID 25093637 DOI: 10.1038/Ismej.2014.135  1
2014 Kashtan N, Roggensack SE, Rodrigue S, Thompson JW, Biller SJ, Coe A, Ding H, Marttinen P, Malmstrom RR, Stocker R, Follows MJ, Stepanauskas R, Chisholm SW. Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science (New York, N.Y.). 344: 416-20. PMID 24763590 DOI: 10.1126/Science.1248575  1
2014 Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, Dmitrieff E, Malmstrom R, Stepanauskas R, Woyke T. Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics Nature Protocols. 9: 1038-1048. PMID 24722403 DOI: 10.1038/Nprot.2014.067  1
2013 Bendall ML, Luong K, Wetmore KM, Blow M, Korlach J, Deutschbauer A, Malmstrom RR. Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1. Journal of Bacteriology. 195: 4966-74. PMID 23995632 DOI: 10.1128/Jb.00935-13  1
2013 Malmstrom RR, Rodrigue S, Huang KH, Kelly L, Kern SE, Thompson A, Roggensack S, Berube PM, Henn MR, Chisholm SW. Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. The Isme Journal. 7: 184-98. PMID 22895163 DOI: 10.1038/Ismej.2012.89  1
2011 Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng JF. Decontamination of MDA reagents for single cell whole genome amplification. Plos One. 6: e26161. PMID 22028825 DOI: 10.1371/Journal.Pone.0026161  1
2010 McCarren J, Becker JW, Repeta DJ, Shi Y, Young CR, Malmstrom RR, Chisholm SW, DeLong EF. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proceedings of the National Academy of Sciences of the United States of America. 107: 16420-7. PMID 20807744 DOI: 10.1073/Pnas.1010732107  1
2010 Rodrigue S, Materna AC, Timberlake SC, Blackburn MC, Malmstrom RR, Alm EJ, Chisholm SW. Unlocking short read sequencing for metagenomics. Plos One. 5: e11840. PMID 20676378 DOI: 10.1371/Journal.Pone.0011840  1
2010 Malmstrom RR, Coe A, Kettler GC, Martiny AC, Frias-Lopez J, Zinser ER, Chisholm SW. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. The Isme Journal. 4: 1252-64. PMID 20463762 DOI: 10.1038/Ismej.2010.60  1
2009 Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW. Whole genome amplification and de novo assembly of single bacterial cells. Plos One. 4: e6864. PMID 19724646 DOI: 10.1371/Journal.Pone.0006864  1
2009 Kirchman DL, Hill V, Cottrell MT, Gradinger R, Malmstrom RR, Parker A. Standing stocks, production, and respiration of phytoplankton and heterotrophic bacteria in the western Arctic Ocean Deep-Sea Research Part Ii: Topical Studies in Oceanography. 56: 1237-1248. DOI: 10.1016/J.Dsr2.2008.10.018  1
2007 Kirchman DL, Elifantz H, Dittel AI, Malmstrom RR, Cottrell MT. Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean Limnology and Oceanography. 52: 495-507. DOI: 10.4319/Lo.2007.52.2.0495  1
2007 Malmstrom RR, Straza TRA, Cottrell MT, Kirchman DL. Diversity, abundance, and biomass production of bacterial groups in the western Arctic Ocean Aquatic Microbial Ecology. 47: 45-55. DOI: 10.3354/Ame047045  1
2006 Cottrell MT, Malmstrom RR, Hill V, Parker AE, Kirchman DL. The metabolic balance between autotrophy and heterotrophy in the western Arctic Ocean Deep-Sea Research Part I: Oceanographic Research Papers. 53: 1831-1844. DOI: 10.1016/j.dsr.2006.08.010  1
2005 Elifantz H, Malmstrom RR, Cottrell MT, Kirchman DL. Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary. Applied and Environmental Microbiology. 71: 7799-805. PMID 16332754 DOI: 10.1128/Aem.71.12.7799-7805.2005  1
2005 Malmstrom RR, Cottrell MT, Elifantz H, Kirchman DL. Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean. Applied and Environmental Microbiology. 71: 2979-86. PMID 15932993 DOI: 10.1128/Aem.71.6.2979-2986.2005  1
2005 Malmstrom RR, Kiene RP, Vila M, Kirchman DL. Dimethylsulfoniopropionate (DMSP) assimilation by Synechococcus in the Gulf of Mexico and northwest Atlantic Ocean Limnology and Oceanography. 50: 1924-1931. DOI: 10.4319/Lo.2005.50.6.1924  1
2005 Kirchman DL, Dittel AI, Malmstrom RR, Cottrell MT. Biogeography of major bacterial groups in the Delaware Estuary Limnology and Oceanography. 50: 1697-1706. DOI: 10.4319/Lo.2005.50.5.1697  1
2005 Kirchman DL, Malmstrom RR, Cottrell MT. Control of bacterial growth by temperature and organic matter in the Western Arctic Deep-Sea Research Part Ii: Topical Studies in Oceanography. 52: 3386-3395. DOI: 10.1016/J.Dsr2.2005.09.005  1
2004 Malmstrom RR, Kiene RP, Cottrell MT, Kirchman DL. Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean. Applied and Environmental Microbiology. 70: 4129-35. PMID 15240292 DOI: 10.1128/Aem.70.7.4129-4135.2004  1
2004 Malmstrom RR, Kiene RP, Kirchman DL. Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico Limnology and Oceanography. 49: 597-606. DOI: 10.4319/Lo.2004.49.2.0597  1
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