| Year |
Citation |
Score |
| 2023 |
Kim K, Gouma S, Vieira MC, Weirick ME, Hensley SE, Cobey S. Measures of population immunity can predict the dominant clade of influenza A (H3N2) and reveal age-associated differences in susceptibility and specificity. Medrxiv : the Preprint Server For Health Sciences. PMID 37961288 DOI: 10.1101/2023.10.26.23297569 |
0.393 |
|
| 2023 |
Vieira MC, Palm AE, Stamper CT, Tepora ME, Nguyen KD, Pham TD, Boyd SD, Wilson PC, Cobey S. Germline-encoded specificities and the predictability of the B cell response. Plos Pathogens. 19: e1011603. PMID 37624867 DOI: 10.1371/journal.ppat.1011603 |
0.31 |
|
| 2023 |
Bi Q, Dickerman BA, McLean HQ, Martin ET, Gaglani M, Wernli KJ, Goundappa B, Flannery B, Lipsitch M, Cobey S. Evaluating reduced effectiveness after repeat influenza vaccination while accounting for confounding by recent infection and within-season waning. Medrxiv : the Preprint Server For Health Sciences. PMID 37016669 DOI: 10.1101/2023.03.12.23287173 |
0.419 |
|
| 2023 |
Tsang TK, Gostic KM, Chen S, Wang Y, Arevalo P, Lau EHY, Cobey S, Cowling BJ. Investigation of impact of childhood immune imprinting on birth year-specific risk of clinical infection during influenza A virus epidemics in Hong Kong. The Journal of Infectious Diseases. PMID 36637115 DOI: 10.1093/infdis/jiad009 |
0.316 |
|
| 2022 |
Simon V, Kota V, Bloomquist RF, Hanley HB, Forgacs D, Pahwa S, Pallikkuth S, Miller LG, Schaenman J, Yeaman MR, Manthei D, Wolf J, Gaur AH, Estepp JH, Srivastava K, ... ... Cobey S, et al. PARIS and SPARTA: Finding the Achilles' Heel of SARS-CoV-2. Msphere. e0017922. PMID 35586986 DOI: 10.1128/msphere.00179-22 |
0.366 |
|
| 2022 |
Du Z, Wang L, Pandey A, Lim WW, Chinazzi M, Piontti APY, Lau EHY, Wu P, Malani A, Cobey S, Cowling BJ. Modeling comparative cost-effectiveness of SARS-CoV-2 vaccine dose fractionation in India. Nature Medicine. PMID 35210596 DOI: 10.1038/s41591-022-01736-z |
0.639 |
|
| 2022 |
Wen FT, Malani A, Cobey S. The Potential Beneficial Effects of Vaccination on Antigenically Evolving Pathogens. The American Naturalist. 199: 223-237. PMID 35077280 DOI: 10.1086/717410 |
0.683 |
|
| 2021 |
Grubaugh ND, Cobey S. Of variants and vaccines. Cell. 184: 6222-6223. PMID 34942096 DOI: 10.1016/j.cell.2021.11.013 |
0.337 |
|
| 2021 |
Guthmiller JJ, Utset HA, Henry C, Li L, Zheng NY, Sun W, Costa Vieira M, Zost S, Huang M, Hensley SE, Cobey S, Palese P, Wilson PC. An Egg-Derived Sulfated -Acetyllactosamine Glycan Is an Antigenic Decoy of Influenza Virus Vaccines. Mbio. e0083821. PMID 34126773 DOI: 10.1128/mBio.00838-21 |
0.426 |
|
| 2021 |
Cobey S, Larremore DB, Grad YH, Lipsitch M. Concerns about SARS-CoV-2 evolution should not hold back efforts to expand vaccination. Nature Reviews. Immunology. 21: 330-335. PMID 33795856 DOI: 10.1038/s41577-021-00544-9 |
0.418 |
|
| 2021 |
Bubar KM, Reinholt K, Kissler SM, Lipsitch M, Cobey S, Grad YH, Larremore DB. Model-informed COVID-19 vaccine prioritization strategies by age and serostatus. Science (New York, N.Y.). PMID 33479118 DOI: 10.1126/science.abe6959 |
0.353 |
|
| 2020 |
Bubar KM, Reinholt K, Kissler SM, Lipsitch M, Cobey S, Grad YH, Larremore DB. Model-informed COVID-19 vaccine prioritization strategies by age and serostatus. Medrxiv : the Preprint Server For Health Sciences. PMID 33330882 DOI: 10.1101/2020.09.08.20190629 |
0.352 |
|
| 2020 |
Dugan HL, Guthmiller JJ, Arevalo P, Huang M, Chen YQ, Neu KE, Henry C, Zheng NY, Lan LY, Tepora ME, Stovicek O, Bitar D, Palm AE, Stamper CT, Changrob S, ... ... Cobey S, et al. Preexisting immunity shapes distinct antibody landscapes after influenza virus infection and vaccination in humans. Science Translational Medicine. 12. PMID 33298562 DOI: 10.1126/scitranslmed.abd3601 |
0.435 |
|
| 2020 |
Gouma S, Kim K, Weirick ME, Gumina ME, Branche A, Topham DJ, Martin ET, Monto AS, Cobey S, Hensley SE. Middle-aged individuals may be in a perpetual state of H3N2 influenza virus susceptibility. Nature Communications. 11: 4566. PMID 32917903 DOI: 10.1038/S41467-020-18465-X |
0.451 |
|
| 2020 |
Arevalo P, McLean HQ, Belongia EA, Cobey S. Earliest infections predict the age distribution of seasonal influenza A cases. Elife. 9. PMID 32633233 DOI: 10.7554/Elife.50060 |
0.531 |
|
| 2020 |
Caudill VR, Qin S, Winstead R, Kaur J, Tisthammer K, Pineda EG, Solis C, Cobey S, Bedford T, Carja O, Eggo RM, Koelle K, Lythgoe K, Regoes R, Roy S, et al. CpG-creating mutations are costly in many human viruses. Evolutionary Ecology. 34: 339-359. PMID 32508375 DOI: 10.1007/S10682-020-10039-Z |
0.312 |
|
| 2020 |
Arevalo P, McLean HQ, Belongia EA, Cobey S. Author response: Earliest infections predict the age distribution of seasonal influenza A cases Elife. DOI: 10.7554/Elife.50060.Sa2 |
0.36 |
|
| 2019 |
Gouma S, Zost SJ, Parkhouse K, Branche A, Topham DJ, Cobey S, Hensley SE. Comparison of human H3N2 antibody responses elicited by egg-based, cell-based, and recombinant protein-based influenza vaccines during the 2017-2018 season. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31598646 DOI: 10.1093/Cid/Ciz996 |
0.542 |
|
| 2019 |
Ranjeva S, Subramanian R, Fang VJ, Leung GM, Ip DKM, Perera RAPM, Peiris JSM, Cowling BJ, Cobey S. Age-specific differences in the dynamics of protective immunity to influenza. Nature Communications. 10: 1660. PMID 30971703 DOI: 10.1038/S41467-019-09652-6 |
0.491 |
|
| 2019 |
Henry C, Zheng NY, Huang M, Cabanov A, Rojas KT, Kaur K, Andrews SF, Palm AE, Chen YQ, Li Y, Hoskova K, Utset HA, Vieira MC, Wrammert J, Ahmed R, ... ... Cobey S, et al. Influenza Virus Vaccination Elicits Poorly Adapted B Cell Responses in Elderly Individuals. Cell Host & Microbe. PMID 30795982 DOI: 10.1016/J.Chom.2019.01.002 |
0.561 |
|
| 2019 |
Wohrley J, Collison M, Marrs R, Marchese E, Beavis K, Bartlett A, Wilson P, Cobey S, Landon E. 1203. Epidemiology of Respiratory Viruses in Influenza-Vaccinated Healthcare Workers During an H1N1-Dominant Season. Open Forum Infectious Diseases. 6. DOI: 10.1093/Ofid/Ofz360.1066 |
0.523 |
|
| 2018 |
Cobey S. Repeated Vaccination May Protect Children From Influenza Infection. Jama Network Open. 1: e183730. PMID 30646259 DOI: 10.1001/jamanetworkopen.2018.3730 |
0.382 |
|
| 2018 |
Neu KE, Guthmiller JJ, Huang M, La J, Vieira MC, Kim K, Zheng NY, Cortese M, Tepora ME, Hamel NJ, Rojas KT, Henry C, Shaw D, Dulberger CL, Pulendran B, ... Cobey S, et al. Spec-seq unveils transcriptional subpopulations of antibody-secreting cells following influenza vaccination. The Journal of Clinical Investigation. PMID 30457979 DOI: 10.1172/Jci121341 |
0.5 |
|
| 2018 |
Cai FY, Fussell T, Cobey S, Lipsitch M. Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine. Plos Computational Biology. 14: e1006333. PMID 30273332 DOI: 10.1371/Journal.Pcbi.1006333 |
0.466 |
|
| 2018 |
Wen FT, Bell SM, Bedford T, Cobey S. Estimating Vaccine-Driven Selection in Seasonal Influenza. Viruses. 10. PMID 30231576 DOI: 10.3390/V10090509 |
0.53 |
|
| 2018 |
Lewnard JA, Cobey S. Immune History and Influenza Vaccine Effectiveness. Vaccine. 6: 28. PMID 29883414 DOI: 10.3390/Vaccines6020028 |
0.54 |
|
| 2018 |
Vieira MC, Zinder D, Cobey S. Selection and Neutral Mutations Drive Pervasive Mutability Losses in Long-Lived Anti-HIV B-Cell Lineages. Molecular Biology and Evolution. 35: 1135-1146. PMID 29688540 DOI: 10.1093/Molbev/Msy024 |
0.315 |
|
| 2018 |
Cobey S, Gouma S, Parkhouse K, Chambers BS, Ertl HC, Schmader KE, Halpin RA, Lin X, Stockwell TB, Das SR, Landon E, Tesic V, Youngster I, Pinsky BA, Wentworth DE, et al. Poor immunogenicity, not vaccine strain egg adaptation, may explain the low H3N2 influenza vaccine effectiveness in 2012-13. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 29471464 DOI: 10.1093/Cid/Ciy097 |
0.546 |
|
| 2017 |
Ranjeva SL, Baskerville EB, Dukic V, Villa LL, Lazcano-Ponce E, Giuliano AR, Dwyer G, Cobey S. Recurring infection with ecologically distinct HPV types can explain high prevalence and diversity. Proceedings of the National Academy of Sciences of the United States of America. 114: 13573-13578. PMID 29208707 DOI: 10.1073/Pnas.1714712114 |
0.34 |
|
| 2017 |
Zost SJ, Parkhouse K, Gumina ME, Kim K, Diaz Perez S, Wilson PC, Treanor JJ, Sant AJ, Cobey S, Hensley SE. Contemporary H3N2 influenza viruses have a glycosylation site that alters binding of antibodies elicited by egg-adapted vaccine strains. Proceedings of the National Academy of Sciences of the United States of America. PMID 29109276 DOI: 10.1073/Pnas.1712377114 |
0.527 |
|
| 2017 |
Cobey S, Baskerville EB, Colijn C, Hanage W, Fraser C, Lipsitch M. Host population structure and treatment frequency maintain balancing selection on drug resistance. Journal of the Royal Society, Interface. 14. PMID 28835542 DOI: 10.1098/Rsif.2017.0295 |
0.306 |
|
| 2017 |
Baskerville EB, Cobey S. Does influenza drive absolute humidity Proceedings of the National Academy of Sciences of the United States of America. 114: 201700369. PMID 28298534 DOI: 10.1073/Pnas.1700369114 |
0.403 |
|
| 2017 |
Cobey S, Hensley SE. Immune history and influenza virus susceptibility. Current Opinion in Virology. 22: 105-111. PMID 28088686 DOI: 10.1016/J.Coviro.2016.12.004 |
0.547 |
|
| 2016 |
Cobey S, Baskerville EB. Limits to Causal Inference with State-Space Reconstruction for Infectious Disease. Plos One. 11. PMID 28030639 DOI: 10.1371/Journal.Pone.0169050 |
0.337 |
|
| 2016 |
Lipsitch M, Barclay W, Raman R, Russell CJ, Belser JA, Cobey S, Kasson PM, Lloyd-Smith JO, Maurer-Stroh S, Riley S, Beauchemin CA, Bedford T, Friedrich TC, Handel A, Herfst S, et al. Viral factors in influenza pandemic risk assessment. Elife. 5. PMID 27834632 DOI: 10.7554/Elife.18491 |
0.461 |
|
| 2016 |
Wen F, Bedford T, Cobey S. Explaining the geographical origins of seasonal influenza A (H3N2). Proceedings. Biological Sciences / the Royal Society. 283. PMID 27629034 DOI: 10.1098/Rspb.2016.1312 |
0.496 |
|
| 2015 |
Childs LM, Baskerville EB, Cobey S. Trade-offs in antibody repertoires to complex antigens. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26194759 DOI: 10.1098/Rstb.2014.0245 |
0.359 |
|
| 2015 |
Cobey S, Wilson P, Matsen FA. The evolution within us. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26194749 DOI: 10.1098/Rstb.2014.0235 |
0.395 |
|
| 2014 |
Cobey S. Pathogen evolution and the immunological niche Annals of the New York Academy of Sciences. 1320: 1-15. PMID 25040161 DOI: 10.1111/Nyas.12493 |
0.421 |
|
| 2013 |
Ampofo WK, Baylor N, Cobey S, Cox NJ, Daves S, Edwards S, Ferguson N, Grohmann G, Hay A, Katz J, Kullabutr K, Lambert L, Levandowski R, Mishra AC, Monto A, et al. Improving influenza vaccine virus selection: report of a WHO informal consultation held at WHO headquarters, Geneva, Switzerland, 14-16 June 2010. Influenza and Other Respiratory Viruses. 7: 52-3. PMID 24034484 DOI: 10.1111/Irv.12081 |
0.538 |
|
| 2013 |
Cobey S, Lipsitch M. Pathogen diversity and hidden regimes of apparent competition American Naturalist. 181: 12-24. PMID 23234842 DOI: 10.1086/668598 |
0.485 |
|
| 2012 |
Cobey S, Lipsitch M. Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes. Science (New York, N.Y.). 335: 1376-80. PMID 22383809 DOI: 10.1126/science.1215947 |
0.344 |
|
| 2012 |
Flanagan ML, Parrish CR, Cobey S, Glass GE, Bush RM, Leighton TJ. Anticipating the species jump: surveillance for emerging viral threats. Zoonoses and Public Health. 59: 155-63. PMID 21914152 DOI: 10.1111/J.1863-2378.2011.01439.X |
0.411 |
|
| 2012 |
Ampofo WK, Baylor N, Cobey S, Cox NJ, Daves S, Edwards S, Ferguson N, Grohmann G, Hay A, Katz J, Kullabutr K, Lambert L, Levandowski R, Mishra AC, et al. Improving influenza vaccine virus selection: report of a WHO informal consultation held at WHO headquarters, Geneva, Switzerland, 14-16 June 2010. Influenza and Other Respiratory Viruses. 6: 142-52, e1-5. PMID 21819547 DOI: 10.1111/J.1750-2659.2011.00277.X |
0.57 |
|
| 2012 |
Cobey S, Lipsitch M. Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes Science. 335: 1376-1380. DOI: 10.1126/Science.1215947 |
0.44 |
|
| 2011 |
Bedford T, Cobey S, Pascual M. Strength and tempo of selection revealed in viral gene genealogies. Bmc Evolutionary Biology. 11: 220. PMID 21787390 DOI: 10.1186/1471-2148-11-220 |
0.581 |
|
| 2011 |
Goldstein E, Cobey S, Takahashi S, Miller JC, Lipsitch M. Predicting the epidemic sizes of influenza A/H1N1, A/H3N2, and B: a statistical method. Plos Medicine. 8: e1001051. PMID 21750666 DOI: 10.1371/Journal.Pmed.1001051 |
0.45 |
|
| 2011 |
Cobey S, Pascual M. Consequences of host heterogeneity, epitope immunodominance, and immune breadth for strain competition. Journal of Theoretical Biology. 270: 80-7. PMID 21093455 DOI: 10.1016/J.Jtbi.2010.11.009 |
0.554 |
|
| 2010 |
Bedford T, Cobey S, Beerli P, Pascual M. Global migration dynamics underlie evolution and persistence of human influenza A (H3N2). Plos Pathogens. 6: e1000918. PMID 20523898 DOI: 10.1371/Journal.Ppat.1000918 |
0.623 |
|
| 2010 |
Cobey S, Pascual M, Dieckmann U. Ecological factors driving the long-term evolution of influenza's host range. Proceedings. Biological Sciences / the Royal Society. 277: 2803-10. PMID 20444714 DOI: 10.1098/Rspb.2010.0519 |
0.574 |
|
| 2008 |
Cobey S, Koelle K. Capturing escape in infectious disease dynamics. Trends in Ecology & Evolution. 23: 572-7. PMID 18715671 DOI: 10.1016/J.Tree.2008.06.008 |
0.362 |
|
| 2006 |
Koelle K, Cobey S, Grenfell B, Pascual M. Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans. Science (New York, N.Y.). 314: 1898-903. PMID 17185596 DOI: 10.1126/Science.1132745 |
0.608 |
|
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