Emma Timmins-Schiffman - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
marine conservation genetics

22/28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Maas AE, Timmins-Schiffman E, Tarrant AM, Nunn BL, Park J, Blanco-Bercial L. Diel metabolic patterns revealed by in situ transcriptome and proteome in a vertically migratory copepod. Molecular Ecology. e17284. PMID 38258354 DOI: 10.1111/mec.17284  0.783
2022 Crandall G, Elliott Thompson R, Eudeline B, Vadopalas B, Timmins-Schiffman E, Roberts S. Proteomic response of early juvenile Pacific oysters () to temperature. Peerj. 10: e14158. PMID 36262416 DOI: 10.7717/peerj.14158  0.323
2021 Timmins-Schiffman E, White SJ, Thompson RE, Vadopalas B, Eudeline B, Nunn BL, Roberts SB. Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery. Environmental Microbiome. 16: 7. PMID 33902744 DOI: 10.1186/s40793-021-00376-z  0.755
2021 Tisthammer KH, Timmins-Schiffman E, Seneca FO, Nunn BL, Richmond RH. Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors. Scientific Reports. 11: 3423. PMID 33564085 DOI: 10.1038/s41598-021-82569-7  0.772
2020 Timmins-Schiffman E, Guzmán JM, Elliott Thompson R, Vadopalas B, Eudeline B, Roberts SB. Larval Geoduck (Panopea generosa) Proteomic Response to Ciliates. Scientific Reports. 10: 6042. PMID 32269285 DOI: 10.1038/S41598-020-63218-X  0.381
2019 Krayushkina D, Timmins-Schiffman E, Faux J, May DH, Riffle M, Harvey HR, Nunn BL. Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi. Scientific Data. 6: 303. PMID 31796751 DOI: 10.1038/S41597-019-0308-Y  0.76
2019 Mikan MP, Harvey HR, Timmins-Schiffman E, Riffle M, May DH, Salter I, Noble WS, Nunn BL. Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes. The Isme Journal. PMID 31492961 DOI: 10.1038/S41396-019-0503-Z  0.737
2019 Spencer LH, Horwith M, Lowe AT, Venkataraman YR, Timmins-Schiffman E, Nunn BL, Roberts SB. Pacific geoduck (Panopea generosa) resilience to natural pH variation. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 30: 91-101. PMID 30818101 DOI: 10.1016/J.Cbd.2019.01.010  0.778
2019 Venkataraman Y, Timmins-Schiffman E, Horwith M, Lowe A, Nunn B, Vadopalas B, Spencer L, Roberts S. Characterization of Pacific oyster Crassostrea gigas proteomic response to natural environmental differences Marine Ecology Progress Series. 610: 65-81. DOI: 10.3354/Meps12858  0.776
2018 Timmins-Schiffman E, Mikan MP, Ting YS, Harvey HR, Nunn BL. MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides. Scientific Reports. 8: 9276. PMID 29915279 DOI: 10.1038/S41598-018-27650-4  0.759
2017 Riffle M, May DH, Timmins-Schiffman E, Mikan MP, Jaschob D, Noble WS, Nunn BL. MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data. Proteomes. 6. PMID 29280960 DOI: 10.3390/Proteomes6010002  0.742
2017 Smith MC, Timmins-Schiffman E, Coton M, Coton E, Hymery N, Nunn BL, Madec S. Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome. Journal of Proteomics. 173: 89-98. PMID 29208510 DOI: 10.1016/J.Jprot.2017.11.025  0.777
2017 Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts S. Integrating discovery-driven proteomics and selected reaction monitoring to develop a non-invasive assay for geoduck reproductive maturation. Journal of Proteome Research. PMID 28730805 DOI: 10.1021/Acs.Jproteome.7B00288  0.754
2016 Timmins-Schiffman E, May DH, Mikan M, Riffle M, Frazar C, Harvey HR, Noble WS, Nunn BL. Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns. The Isme Journal. PMID 27824341 DOI: 10.1038/Ismej.2016.132  0.711
2016 May DH, Timmins-Schiffman E, Mikan MP, Harvey HR, Borenstein E, Nunn BL, Noble WS. An alignment-free 'metapeptide' strategy for metaproteomic characterization of microbiome samples using shotgun metagenomic sequencing. Journal of Proteome Research. PMID 27396978 DOI: 10.1021/Acs.Jproteome.6B00239  0.726
2016 Boyd PW, Dillingham PW, Mcgraw CM, Armstrong EA, Cornwall CE, Feng YY, Hurd CL, Gault-Ringold M, Roleda MY, Timmins-Schiffman E, Nunn BL. Physiological responses of a Southern Ocean diatom to complex future ocean conditions Nature Climate Change. 6: 207-213. DOI: 10.1038/Nclimate2811  0.76
2015 Winans GA, Gayeski N, Timmins-Schiffman E. All dam-affected trout populations are not alike: fine scale geographic variability in resident rainbow trout in Icicle Creek, WA, USA Conservation Genetics. 16: 301-315. DOI: 10.1007/S10592-014-0659-Z  0.307
2014 Nunn BL, Slattery KV, Cameron KA, Timmins-Schiffman E, Junge K. Proteomics of Colwellia psychrerythraea at subzero temperatures - a life with limited movement, flexible membranes and vital DNA repair. Environmental Microbiology. PMID 25471130 DOI: 10.1111/1462-2920.12691  0.791
2014 Timmins-Schiffman E, Coffey WD, Hua W, Nunn BL, Dickinson GH, Roberts SB. Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas. Bmc Genomics. 15: 951. PMID 25362893 DOI: 10.1186/1471-2164-15-951  0.749
2013 Timmins-Schiffman E, Nunn BL, Goodlett DR, Roberts SB. Shotgun proteomics as a viable approach for biological discovery in the Pacific oyster. Conservation Physiology. 1: cot009. PMID 27293593 DOI: 10.1093/Conphys/Cot009  0.805
2013 Timmins-Schiffman E, O'Donnell MJ, Friedman CS, Roberts SB. Elevated pCO2 causes developmental delay in early larval Pacific oysters, Crassostrea gigas Marine Biology. 160: 1973-1982. DOI: 10.1007/S00227-012-2055-X  0.317
2012 Timmins-Schiffman E, Roberts S. Characterization of genes involved in ceramide metabolism in the Pacific oyster (Crassostrea gigas). Bmc Research Notes. 5: 502. PMID 22974230 DOI: 10.1186/1756-0500-5-502  0.312
Low-probability matches (unlikely to be authored by this person)
2020 Timmins-Schiffman E, Guzmán JM, Elliott Thompson R, Vadopalas B, Eudeline B, Roberts SB. Dynamic response in the larval geoduck () proteome to elevated CO. Ecology and Evolution. 10: 185-197. PMID 31988722 DOI: 10.1002/Ece3.5885  0.279
2018 Maas AE, Blanco-Bercial L, Lo A, Tarrant AM, Timmins-Schiffman E. Variations in Copepod Proteome and Respiration Rate in Association with Diel Vertical Migration and Circadian Cycle. The Biological Bulletin. 235: 30-42. PMID 30160998 DOI: 10.1086/699219  0.25
2020 Trigg SA, Mitchell KR, Thompson RE, Eudeline B, Vadopalas B, Timmins-Schiffman EB, Roberts SB. Temporal proteomic profiling reveals insight into critical developmental processes and temperature-influenced physiological response differences in a bivalve mollusc. Bmc Genomics. 21: 723. PMID 33076839 DOI: 10.1186/s12864-020-07127-3  0.236
2023 Wanamaker SA, Mitchell KR, Thompson RE, Eudeline B, Vadopalas B, Timmins-Schiffman EB, Roberts SB. Correction: Temporal proteomic profiling reveals insight into critical developmental processes and temperature-influenced physiological response differences in a bivalve mollusc. Bmc Genomics. 24: 188. PMID 37024775 DOI: 10.1186/s12864-023-09145-3  0.212
2013 Timmins-Schiffman EB, Friedman CS, Metzger DC, White SJ, Roberts SB. Genomic resource development for shellfish of conservation concern. Molecular Ecology Resources. 13: 295-305. PMID 23280275 DOI: 10.1111/1755-0998.12052  0.208
2017 Waples RS, Elz A, Arnsberg BD, Faulkner JR, Hard JJ, Timmins-Schiffman E, Park LK. Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon. Evolutionary Applications. 10: 667-681. PMID 28717387 DOI: 10.1111/eva.12468  0.163
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