Robert J. Toonen - Publications

University of Hawai'i, Honolulu, HI, United States 

149 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kraft DW, Conklin EE, Barba EW, Hutchinson M, Toonen RJ, Forsman ZH, Bowen BW. Genomics versus mtDNA for resolving stock structure in the silky shark (). Peerj. 8: e10186. PMID 33150082 DOI: 10.7717/peerj.10186  0.96
2020 Riginos C, Crandall ED, Liggins L, Gaither MR, Ewing RB, Meyer C, Andrews KR, Euclide PT, Titus BM, Overgaard Therkildsen N, Salces-Castellano A, Stewart LC, Toonen RJ, Deck J. Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research. Molecular Ecology Resources. PMID 33031625 DOI: 10.1111/1755-0998.13269  0.96
2020 Capel KCC, López C, Moltó-Martín I, Zilberberg C, Creed JC, Knapp ISS, Hernández M, Forsman ZH, Toonen RJ, Kitahara MV. , a new genus of Dendrophylliidae (Cnidaria, Anthozoa, Scleractinia) from the eastern Atlantic. Peerj. 8: e8633. PMID 32211227 DOI: 10.7717/peerj.8633  0.48
2020 Tisthammer KH, Forsman ZH, Toonen RJ, Richmond RH. Genetic structure is stronger across human-impacted habitats than among islands in the coral . Peerj. 8: e8550. PMID 32110487 DOI: 10.7717/peerj.8550  0.48
2020 Antaky CC, Conklin EE, Toonen RJ, Knapp ISS, Price MR. Unexpectedly high genetic diversity in a rare and endangered seabird in the Hawaiian Archipelago. Peerj. 8: e8463. PMID 32071808 DOI: 10.7717/peerj.8463  0.48
2020 Bowen BW, Forsman ZH, Whitney JL, Faucci A, Hoban M, Canfield SJ, Johnston EC, Coleman RC, Copus JM, Vicente J, Toonen RJ. Species Radiations in the Sea: What the Flock? The Journal of Heredity. PMID 31943081 DOI: 10.1093/jhered/esz075  0.96
2019 Iguchi A, Yoshioka Y, Forsman ZH, Knapp ISS, Toonen RJ, Hongo Y, Nagai S, Yasuda N. RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea). Bmc Evolutionary Biology. 19: 187. PMID 31615417 DOI: 10.1186/s12862-019-1522-0  0.48
2019 Cunha RL, Forsman ZH, Belderok R, Knapp ISS, Castilho R, Toonen RJ. Rare coral under the genomic microscope: timing and relationships among Hawaiian Montipora. Bmc Evolutionary Biology. 19: 153. PMID 31340762 DOI: 10.1186/s12862-019-1476-2  0.48
2019 Ylitalo H, Oliver TA, Fernandez-Silva I, Wood JB, Toonen RJ. A behavioral and genetic study of multiple paternity in a polygamous marine invertebrate, . Peerj. 7: e6927. PMID 31211008 DOI: 10.7717/peerj.6927  0.76
2019 Montgomery AD, Fenner D, Toonen RJ. Annotated checklist for stony corals of American Sāmoa with reference to mesophotic depth records. Zookeys. 849: 1-170. PMID 31171897 DOI: 10.3897/zookeys.849.34763  0.32
2019 Crandall ED, Toonen RJ, Selkoe KA. A coalescent sampler successfully detects biologically meaningful population structure overlooked by -statistics. Evolutionary Applications. 12: 255-265. PMID 30697337 DOI: 10.1111/eva.12712  0.52
2018 Barshis DJ, Birkeland C, Toonen RJ, Gates RD, Stillman JH. High-frequency temperature variability mirrors fixed differences in thermal limits of the massive coral (Dana, 1846). The Journal of Experimental Biology. PMID 30305375 DOI: 10.1242/jeb.188581  0.48
2018 Copus JM, Montgomery WL, Forsman ZH, Bowen BW, Toonen RJ. Geopolitical species revisited: genomic and morphological data indicate that the roundtail chub species complex (Teleostei, Cyprinidae) is a single species. Peerj. 6: e5605. PMID 30294509 DOI: 10.7717/peerj.5605  0.96
2018 Conklin EE, Neuheimer AB, Toonen RJ. Modeled larval connectivity of a multi-species reef fish and invertebrate assemblage off the coast of Moloka'i, Hawai'i. Peerj. 6: e5688. PMID 30280049 DOI: 10.7717/peerj.5688  0.48
2018 Dudoit ', Iacchei M, Coleman RR, Gaither MR, Browne WE, Bowen BW, Toonen RJ. The little shrimp that could: phylogeography of the circumtropical(Crustacea: Decapoda), reveals divergent Atlantic and Pacific lineages. Peerj. 6: e4409. PMID 29527409 DOI: 10.7717/peerj.4409  0.96
2018 Johnston EC, Forsman ZH, Toonen RJ. A simple molecular technique for distinguishing species reveals frequent misidentification of Hawaiian corals in the genus. Peerj. 6: e4355. PMID 29441239 DOI: 10.7717/peerj.4355  0.48
2017 Deck J, Gaither MR, Ewing R, Bird CE, Davies N, Meyer C, Riginos C, Toonen RJ, Crandall ED. The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples. Plos Biology. 15: e2002925. PMID 28771471 DOI: 10.1371/journal.pbio.2002925  0.96
2017 Johnston EC, Forsman ZH, Flot JF, Schmidt-Roach S, Pinzón JH, Knapp ISS, Toonen RJ. A genomic glance through the fog of plasticity and diversification in Pocillopora. Scientific Reports. 7: 5991. PMID 28729652 DOI: 10.1038/s41598-017-06085-3  0.48
2017 Puritz JB, Keever CC, Addison JA, Barbosa SS, Byrne M, Hart MW, Grosberg RK, Toonen RJ. Life-history predicts past and present population connectivity in two sympatric sea stars. Ecology and Evolution. 7: 3916-3930. PMID 28616188 DOI: 10.1002/ece3.2938  1
2017 McFadden CS, Haverkort-Yeh R, Reynolds AM, Halàsz A, Quattrini AM, Forsman ZH, Benayahu Y, Toonen RJ. Species boundaries in the absence of morphological, ecological or geographical differentiation in the Red Sea octocoral genus Ovabunda (Alcyonacea: Xeniidae). Molecular Phylogenetics and Evolution. PMID 28467886 DOI: 10.1016/j.ympev.2017.04.025  0.48
2017 Stamoulis KA, Friedlander AM, Meyer CG, Fernandez-Silva I, Toonen RJ. Coral reef grazer-benthos dynamics complicated by invasive algae in a small marine reserve. Scientific Reports. 7: 43819. PMID 28276458 DOI: 10.1038/srep43819  0.76
2016 Cros A, Toonen RJ, Davies SW, Karl SA. Population genetic structure between Yap and Palau for the coral Acropora hyacinthus. Peerj. 4: e2330. PMID 27602294 DOI: 10.7717/peerj.2330  0.4
2016 Veazey LM, Franklin EC, Kelley C, Rooney J, Frazer LN, Toonen RJ. The implementation of rare events logistic regression to predict the distribution of mesophotic hard corals across the main Hawaiian Islands. Peerj. 4: e2189. PMID 27441122 DOI: 10.7717/peerj.2189  0.36
2016 Bowen BW, Gaither MR, DiBattista JD, Iacchei M, Andrews KR, Grant WS, Toonen RJ, Briggs JC. Comparative phylogeography of the ocean planet. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432963 DOI: 10.1073/pnas.1602404113  0.36
2016 Selkoe KA, Gaggiotti OE, Treml EA, Wren JL, Donovan MK, Toonen RJ. The DNA of coral reef biodiversity: predicting and protecting genetic diversity of reef assemblages. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27122569 DOI: 10.1098/rspb.2016.0354  0.52
2016 Iacchei M, Gaither MR, Bowen BW, Toonen RJ. Testing dispersal limits in the sea: Range-wide phylogeography of the pronghorn spiny lobster Panulirus penicillatus Journal of Biogeography. DOI: 10.1111/jbi.12689  0.84
2016 Dibattista JD, Howard Choat J, Gaither MR, Hobbs JPA, Lozano-Cortés DF, Myers RF, Paulay G, Rocha LA, Toonen RJ, Westneat MW, Berumen ML. On the origin of endemic species in the Red Sea Journal of Biogeography. 43: 13-30. DOI: 10.1111/jbi.12631  0.84
2015 Forsman ZH, Page CA, Toonen RJ, Vaughan D. Growing coral larger and faster: micro-colony-fusion as a strategy for accelerating coral cover. Peerj. 3: e1313. PMID 26500822 DOI: 10.7717/peerj.1313  0.36
2015 Westbrook CE, Ringang RR, Cantero SM, Toonen RJ. Survivorship and feeding preferences among size classes of outplanted sea urchins, Tripneustes gratilla, and possible use as biocontrol for invasive alien algae. Peerj. 3: e1235. PMID 26401450 DOI: 10.7717/peerj.1235  0.36
2015 Knapp IS, Forsman ZH, Williams GJ, Toonen RJ, Bell JJ. Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona (Soestella) caerulea), (order: Haplosclerida) to Palmyra Atoll, Central Pacific. Peerj. 3: e1170. PMID 26339548 DOI: 10.7717/peerj.1170  0.36
2015 Bahr KD, Jokiel PL, Toonen RJ. The unnatural history of Kāne'ohe Bay: coral reef resilience in the face of centuries of anthropogenic impacts. Peerj. 3: e950. PMID 26020007 DOI: 10.7717/peerj.950  1
2015 Belcaid M, Toonen RJ. Demystifying computer science for molecular ecologists. Molecular Ecology. 24: 2619-40. PMID 25824671 DOI: 10.1111/mec.13175  1
2015 Forsman Z, Wellington GM, Fox GE, Toonen RJ. Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits. Peerj. 3: e751. PMID 25674364 DOI: 10.7717/peerj.751  1
2015 Hurley KKC, Timmers MA, Godwin LS, Copus JM, Skillings DJ, Toonen RJ. An assessment of shallow and mesophotic reef brachyuran crab assemblages on the south shore of O‘ahu, Hawai‘i Coral Reefs. 1-10. DOI: 10.1007/s00338-015-1382-z  0.44
2014 Puritz JB, Matz MV, Toonen RJ, Weber JN, Bolnick DI, Bird CE. Demystifying the RAD fad. Molecular Ecology. 23: 5937-42. PMID 25319241 DOI: 10.1111/mec.12965  1
2014 Coleman RR, Gaither MR, Kimokeo B, Stanton FG, Bowen BW, Toonen RJ. Large-scale introduction of the Indo-Pacific damselfish Abudefduf vaigiensis into Hawai'i promotes genetic swamping of the endemic congener A. abdominalis. Molecular Ecology. 23: 5552-65. PMID 25283736 DOI: 10.1111/mec.12952  1
2014 Selkoe KA, Gaggiotti OE, Bowen BW, Toonen RJ. Emergent patterns of population genetic structure for a coral reef community. Molecular Ecology. 23: 3064-79. PMID 24866831 DOI: 10.1111/mec.12804  1
2014 Longenecker K, Chan YL, Toonen RJ, Carlon DB, Hunt TL, Friedlander AM, Demartini EE. Archaeological evidence of validity of fish populations on unexploited reefs as proxy targets for modern populations. Conservation Biology : the Journal of the Society For Conservation Biology. 28: 1322-30. PMID 24665960 DOI: 10.1111/cobi.12287  1
2014 Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J, Drummond A, Faith DP, Geller J, Gilbert J, Glöckner FO, Hirsch PR, Leong JA, Meyer C, Obst M, Planes S, ... ... Toonen R, et al. The founding charter of the Genomic Observatories Network. Gigascience. 3: 2. PMID 24606731 DOI: 10.1186/2047-217X-3-2  1
2014 Halász A, McFadden CS, Aharonovich D, Toonen R, Benayahu Y. A revision of the octocoral genus Ovabunda Alderslade, 2001 (Anthozoa, Octocorallia, Xeniidae). Zookeys. 1-41. PMID 24493958 DOI: 10.3897/zookeys.373.6511  1
2014 Iacchei M, O'Malley JM, Toonen RJ. After the gold rush: Population structure of spiny lobsters in Hawaii following a fishery closure and the implications for contemporary spatial management Bulletin of Marine Science. 90: 331-357. DOI: 10.5343/bms.2013.1042  1
2014 Bowen BW, Shanker K, Yasuda N, Maria MC, Von Der Heyden S, Paulay G, Rocha LA, Selkoe KA, Barber PH, Williams ST, Lessios HA, Crandall ED, Bernardi G, Meyer CP, Carpenter KE, ... Toonen RJ, et al. Phylogeography unplugged: Comparative surveys in the genomic era Bulletin of Marine Science. 90: 13-46. DOI: 10.5343/bms.2013.1007  1
2014 Skillings DJ, Bird CE, Toonen RJ. Comparative population structure of two edible Indo-Pacific coral reef sea cucumbers (Echinodermata: Holothuroidea) Bulletin of Marine Science. 90: 359-378. DOI: 10.5343/bms.2013.1001  1
2014 Concepcion GT, Baums IB, Toonen RJ. Regional population structure of montipora capitata across the hawaiian archipelago Bulletin of Marine Science. 90: 257-275. DOI: 10.5343/bms.2012.1109  1
2014 Keyse J, Crandall ED, Toonen RJ, Meyer CP, Treml EA, Riginos C. The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region Bulletin of Marine Science. 90: 47-78. DOI: 10.5343/bms.2012.1107  1
2014 Beger M, Selkoe KA, Treml E, Barber PH, Von Der Heyden S, Crandall ED, Toonen RJ, Riginos C. Evolving coral reef conservation with genetic information Bulletin of Marine Science. 90: 159-185. DOI: 10.5343/bms.2012.1106  1
2014 Marti-Puig P, Forsman ZH, Haverkort-Yeh RD, Knapp ISS, Maragos JE, Toonen RJ. Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not Bulletin of Marine Science. 90: 211-231. DOI: 10.5343/bms.2012.1080  1
2014 Von Der Heyden S, Beger M, Toonen RJ, Van Herwerden L, Juinio-Meñez MA, Ravago-Gotanco R, Fauvelot C, Bernardi G. The application of genetics to marine management and conservation: Examples from the Indo-Pacific Bulletin of Marine Science. 90: 123-158. DOI: 10.5343/bms.2012.1079  1
2014 Baums IB, Scott Godwin L, Franklin EC, Carlon DB, Toonen RJ. Discordant population expansions in four species of coral-associated Pacific hermit crabs (Anomura: Diogenidae) linked to habitat availability resulting from sea-level change Journal of Biogeography. 41: 339-352. DOI: 10.1111/jbi.12181  1
2014 Ylitalo HA, Watling L, Toonen RJ. First description of hatchlings and eggs of Octopus oliveri (Berry, 1914) (Cephalopoda: Octopodidae) Molluscan Research. 34: 79-83. DOI: 10.1080/13235818.2013.860871  1
2014 Halàsz A, Reynolds AM, McFadden CS, Toonen RJ, Benayahu Y. Could polyp pulsation be the key to species boundaries in the genus Ovabunda (Octocorallia: Alcyonacea: Xeniidae)? Hydrobiologia. DOI: 10.1007/s10750-014-2106-z  1
2013 Toonen RJ, Puritz JB, Forsman ZH, Whitney JL, Fernandez-Silva I, Andrews KR, Bird CE. ezRAD: a simplified method for genomic genotyping in non-model organisms. Peerj. 1: e203. PMID 24282669 DOI: 10.7717/peerj.203  1
2013 Toonen RJ, Wilhelm T', Maxwell SM, Wagner D, Bowen BW, Sheppard CR, Taei SM, Teroroko T, Moffitt R, Gaymer CF, Morgan L, Lewis N, Sheppard AL, Parks J, Friedlander AM, et al. One size does not fit all: the emerging frontier in large-scale marine conservation. Marine Pollution Bulletin. 77: 7-10. PMID 24246654 DOI: 10.1016/j.marpolbul.2013.10.039  1
2013 Bird CE, Franklin EC, Smith CM, Toonen RJ. Between tide and wave marks: a unifying model of physical zonation on littoral shores. Peerj. 1: e154. PMID 24109544 DOI: 10.7717/peerj.154  1
2013 Luck DG, Forsman ZH, Toonen RJ, Leicht SJ, Kahng SE. Polyphyly and hidden species among Hawai'i's dominant mesophotic coral genera, Leptoseris and Pavona (Scleractinia: Agariciidae). Peerj. 1: e132. PMID 24032091 DOI: 10.7717/peerj.132  1
2013 Keever CC, Puritz JB, Addison JA, Byrne M, Grosberg RK, Toonen RJ, Hart MW. Shallow gene pools in the high intertidal: extreme loss of genetic diversity in viviparous sea stars (Parvulastra). Biology Letters. 9: 20130551. PMID 23925835 DOI: 10.1098/rsbl.2013.0551  1
2013 Iacchei M, Ben-Horin T, Selkoe KA, Bird CE, García-Rodríguez FJ, Toonen RJ. Combined analyses of kinship and FST suggest potential drivers of chaotic genetic patchiness in high gene-flow populations. Molecular Ecology. 22: 3476-94. PMID 23802550 DOI: 10.1111/mec.12341  1
2013 Gaither MR, Bowen BW, Toonen RJ. Population structure in the native range predicts the spread of introduced marine species. Proceedings. Biological Sciences / the Royal Society. 280: 20130409. PMID 23595272 DOI: 10.1098/rspb.2013.0409  1
2013 Andrews KR, Perrin WF, Oremus M, Karczmarski L, Bowen BW, Puritz JB, Toonen RJ. The evolving male: spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers. Molecular Ecology. 22: 2408-23. PMID 23551274 DOI: 10.1111/mec.12193  1
2013 Fernandez-Silva I, Toonen RJ. Optimizing selection of microsatellite loci from 454 pyrosequencing via post-sequencing bioinformatic analyses. Methods in Molecular Biology (Clifton, N.J.). 1006: 101-20. PMID 23546786 DOI: 10.1007/978-1-62703-389-3_7  1
2013 Puritz JB, Toonen RJ. Next-generation sequencing for high-throughput molecular ecology: a step-by-step protocol for targeted multilocus genotyping by pyrosequencing. Methods in Molecular Biology (Clifton, N.J.). 1006: 89-99. PMID 23546785 DOI: 10.1007/978-1-62703-389-3_6  1
2013 Gaither MR, Aeby G, Vignon M, Meguro Y, Rigby M, Runyon C, Toonen RJ, Wood CL, Bowen BW. An invasive fish and the time-lagged spread of its parasite across the Hawaiian archipelago. Plos One. 8: e56940. PMID 23468894 DOI: 10.1371/journal.pone.0056940  1
2013 Bowen BW, Rocha LA, Toonen RJ, Karl SA. The origins of tropical marine biodiversity. Trends in Ecology & Evolution. 28: 359-66. PMID 23453048 DOI: 10.1016/j.tree.2013.01.018  1
2013 Fernandez-Silva I, Whitney J, Wainwright B, Andrews KR, Ylitalo-Ward H, Bowen BW, Toonen RJ, Goetze E, Karl SA. Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline. Plos One. 8: e55990. PMID 23424642 DOI: 10.1371/journal.pone.0055990  1
2013 Forsman ZH, Johnston EC, Brooks AJ, Adam TC, Toonen RJ. Genetic evidence for regional isolation of Pocillopora corals from Moorea Oceanography. 26: 153-155. DOI: 10.5670/oceanog.2013.58  1
2013 Leichter JJ, Alldredge AL, Bernardi G, Brooks AJ, Carlson CA, Carpenter RC, Edmunds PJ, Fewings MR, Hanson KM, Hench JL, Holbrook SJ, Nelson CE, Schmitt RJ, Toonen RJ, Washburn L, et al. Biological and physical interactions on a tropical island coral reef: Transport and retention processes on moorea, French Polynesia Oceanography. 26: 52-63. DOI: 10.5670/oceanog.2013.45  1
2013 Jury CP, Thomas FIM, Atkinson MJ, Toonen RJ. Buffer capacity, ecosystem feedbacks, and seawater chemistry under global change Water (Switzerland). 5: 1303-1325. DOI: 10.3390/w5031303  1
2013 Barbosa SS, Klanten SO, Puritz JB, Toonen RJ, Byrne M. Very fine-scale population genetic structure of sympatric asterinid sea stars with benthic and pelagic larvae: Influence of mating system and dispersal potential Biological Journal of the Linnean Society. 108: 821-833. DOI: 10.1111/bij.12006  1
2013 Haverkort-Yeh RD, McFadden CS, Benayahu Y, Berumen M, Halász A, Toonen RJ. A taxonomic survey of Saudi Arabian Red Sea octocorals (Cnidaria: Alcyonacea) Marine Biodiversity. 43: 279-291. DOI: 10.1007/s12526-013-0157-4  1
2012 Wagner D, Luck DG, Toonen RJ. The biology and ecology of black corals (Cnidaria: Anthozoa: Hexacorallia: Antipatharia). Advances in Marine Biology. 63: 67-132. PMID 22877611 DOI: 10.1016/B978-0-12-394282-1.00002-8  1
2012 Stat M, Baker AC, Bourne DG, Correa AM, Forsman Z, Huggett MJ, Pochon X, Skillings D, Toonen RJ, van Oppen MJ, Gates RD. Molecular delineation of species in the coral holobiont. Advances in Marine Biology. 63: 1-65. PMID 22877610 DOI: 10.1016/B978-0-12-394282-1.00001-6  1
2012 Gaither MR, Toonen RJ, Bowen BW. Coming out of the starting blocks: extended lag time rearranges genetic diversity in introduced marine fishes of Hawai'i. Proceedings. Biological Sciences / the Royal Society. 279: 3948-57. PMID 22874747 DOI: 10.1098/rspb.2012.1481  1
2012 Puritz JB, Keever CC, Addison JA, Byrne M, Hart MW, Grosberg RK, Toonen RJ. Extraordinarily rapid life-history divergence between Cryptasterina sea star species. Proceedings. Biological Sciences / the Royal Society. 279: 3914-22. PMID 22810427 DOI: 10.1098/rspb.2012.1343  1
2012 Karl SA, Toonen RJ, Grant WS, Bowen BW. Common misconceptions in molecular ecology: echoes of the modern synthesis. Molecular Ecology. 21: 4171-89. PMID 22574714 DOI: 10.1111/j.1365-294X.2012.05576.x  1
2012 Puritz JB, Addison JA, Toonen RJ. Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms. Plos One. 7: e34241. PMID 22470543 DOI: 10.1371/journal.pone.0034241  1
2012 Timmers MA, Bird CE, Skillings DJ, Smouse PE, Toonen RJ. There's no place like home: crown-of-thorns outbreaks in the central pacific are regionally derived and independent events. Plos One. 7: e31159. PMID 22363570 DOI: 10.1371/journal.pone.0031159  1
2012 Daly-Engel TS, Seraphin KD, Holland KN, Coffey JP, Nance HA, Toonen RJ, Bowen BW. Global phylogeography with mixed-marker analysis reveals male-mediated dispersal in the endangered scalloped hammerhead shark (Sphyrna lewini). Plos One. 7: e29986. PMID 22253848 DOI: 10.1371/journal.pone.0029986  1
2012 O'Malley JM, Drazen JC, Popp BN, Gier E, Toonen RJ. Spatial variability in growth and prey availability of lobsters in the Northwestern Hawaiian Islands Marine Ecology Progress Series. 449: 211-220. DOI: 10.3354/meps09533  1
2012 Forsman ZH, Kimokeo BK, Bird CE, Hunter CL, Toonen RJ. Coral farming: Effects of light, water motion and artificial foods Journal of the Marine Biological Association of the United Kingdom. 92: 721-729. DOI: 10.1017/S0025315411001500  1
2012 Toonen RJ, Nakayama T, Ogawa T, Rossiter A, Delbeek JC. Growth of cultured giant clams (Tridacna spp.) in low pH, high-nutrient seawater: Species-specific effects of substrate and supplemental feeding under acidification Journal of the Marine Biological Association of the United Kingdom. 92: 731-740. DOI: 10.1017/S0025315411000762  1
2012 Bird CE, Fernandez-Silva I, Skillings DJ, Toonen RJ. Sympatric Speciation in the Post "Modern Synthesis" Era of Evolutionary Biology Evolutionary Biology. 39: 158-180. DOI: 10.1007/s11692-012-9183-6  1
2012 Wagner D, Waller RG, Montgomery AD, Kelley CD, Toonen RJ. Sexual reproduction of the Hawaiian black coral Antipathes griggi (Cnidaria: Antipatharia) Coral Reefs. 31: 795-806. DOI: 10.1007/s00338-012-0882-3  1
2011 Toonen RJ, Andrews KR, Baums IB, Bird CE, Concepcion GT, Daly-Engel TS, Eble JA, Faucci A, Gaither MR, Iacchei M, Puritz JB, Schultz JK, Skillings DJ, Timmers MA, Bowen BW. Defining Boundaries for Ecosystem-Based Management: A Multispecies Case Study of Marine Connectivity across the Hawaiian Archipelago. Journal of Marine Biology. 2011. PMID 25505913 DOI: 10.1155/2011/460173  1
2011 Eble JA, Toonen RJ, Sorenson L, Basch LV, Papastamatiou YP, Bowen BW. Escaping paradise: Larval export from Hawaii in an Indo-Pacific reef fish, the Yellow Tang (Zebrasoma flavescens). Marine Ecology Progress Series. 428: 245-258. PMID 25505806 DOI: 10.3354/meps09083  1
2011 Work TM, Forsman ZH, Szabó Z, Lewis TD, Aeby GS, Toonen RJ. Inter-specific coral chimerism: genetically distinct multicellular structures associated with tissue loss in Montipora capitata. Plos One. 6: e22869. PMID 21829541 DOI: 10.1371/journal.pone.0022869  1
2011 Bird CE, Holland BS, Bowen BW, Toonen RJ. Diversification of sympatric broadcast-spawning limpets (Cellana spp.) within the Hawaiian archipelago. Molecular Ecology. 20: 2128-41. PMID 21481050 DOI: 10.1111/j.1365-294X.2011.05081.x  1
2011 Puritz JB, Toonen RJ. Coastal pollution limits pelagic larval dispersal. Nature Communications. 2: 226. PMID 21407192 DOI: 10.1038/ncomms1238  1
2011 Stat M, Bird CE, Pochon X, Chasqui L, Chauka LJ, Concepcion GT, Logan D, Takabayashi M, Toonen RJ, Gates RD. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. Plos One. 6: e15854. PMID 21246044 DOI: 10.1371/journal.pone.0015854  1
2011 Schultz JK, Baker JD, Toonen RJ, Harting AL, Bowen BW. Range-wide genetic connectivity of the Hawaiian monk seal and implications for translocation. Conservation Biology : the Journal of the Society For Conservation Biology. 25: 124-32. PMID 21166713 DOI: 10.1111/j.1523-1739.2010.01615.x  1
2011 Wagner D, Pochon X, Irwin L, Toonen RJ, Gates RD. Azooxanthellate? Most Hawaiian black corals contain Symbiodinium. Proceedings. Biological Sciences / the Royal Society. 278: 1323-8. PMID 20961904 DOI: 10.1098/rspb.2010.1681  1
2011 Selkoe KA, Toonen RJ. Marine connectivity: A new look at pelagic larval duration and genetic metrics of dispersal Marine Ecology Progress Series. 436: 291-305. DOI: 10.3354/meps09238  1
2011 Wagner D, Papastamatiou YP, Kosaki RK, Gleason KA, McFall GB, Boland RC, Pyle RL, Toonen RJ. New records of commercially valuable black corals (cnidaria: Antipatharia) from the Northwestern Hawaiian Islands at mesophotic depths Pacific Science. 65: 249-255. DOI: 10.2984/65.2.249  1
2011 Wagner D, Waller RG, Toonen RJ. Sexual reproduction of Hawaiian black corals, with a review of the reproduction of antipatharians (Cnidaria: Anthozoa: Hexacorallia) Invertebrate Biology. 130: 211-225. DOI: 10.1111/j.1744-7410.2011.00233.x  1
2011 Dawson MN, Barber PH, González-Guzmán LI, Toonen RJ, Dugan JE, Grosberg RK. Phylogeography of Emerita analoga (Crustacea, Decapoda, Hippidae), an eastern Pacific Ocean sand crab with long-lived pelagic larvae Journal of Biogeography. 38: 1600-1612. DOI: 10.1111/j.1365-2699.2011.02499.x  1
2011 Szabó Z, Kimokeo BK, Toonen RJ, Randall JE. On the status of the hawaiian seahorses hippocampus hilonis, H. Histrix and H. fisheri (Syngnathidae) Marine Biology Research. 7: 701-709. DOI: 10.1080/17451000.2011.558096  1
2011 Gaither MR, Szabó Z, Crepeau MW, Bird CE, Toonen RJ. Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments Coral Reefs. 30: 329-333. DOI: 10.1007/s00338-010-0687-1  1
2010 Forsman ZH, Concepcion GT, Haverkort RD, Shaw RW, Maragos JE, Toonen RJ. Ecomorph or endangered coral? DNA and microstructure reveal hawaiian species complexes: Montipora dilatata/flabellata/turgescens & M. patula/verrilli. Plos One. 5: e15021. PMID 21151995 DOI: 10.1371/journal.pone.0015021  1
2010 Polato NR, Concepcion GT, Toonen RJ, Baums IB. Isolation by distance across the Hawaiian Archipelago in the reef-building coral Porites lobata. Molecular Ecology. 19: 4661-77. PMID 20887361 DOI: 10.1111/j.1365-294X.2010.04836.x  1
2010 Selkoe KA, Watson JR, White C, Horin TB, Iacchei M, Mitarai S, Siegel DA, Gaines SD, Toonen RJ. Taking the chaos out of genetic patchiness: seascape genetics reveals ecological and oceanographic drivers of genetic patterns in three temperate reef species. Molecular Ecology. 19: 3708-26. PMID 20723063 DOI: 10.1111/j.1365-294X.2010.04658.x  1
2010 Barshis DJ, Stillman JH, Gates RD, Toonen RJ, Smith LW, Birkeland C. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity? Molecular Ecology. 19: 1705-20. PMID 20345691 DOI: 10.1111/j.1365-294X.2010.04574.x  1
2010 Gaither MR, Bowen BW, Toonen RJ, Planes S, Messmer V, Earle J, Ross Robertson D. Genetic consequences of introducing allopatric lineages of Bluestriped Snapper (Lutjanus kasmira) to Hawaii. Molecular Ecology. 19: 1107-21. PMID 20163550 DOI: 10.1111/j.1365-294X.2010.04535.x  1
2010 White C, Selkoe KA, Watson J, Siegel DA, Zacherl DC, Toonen RJ. Ocean currents help explain population genetic structure. Proceedings. Biological Sciences / the Royal Society. 277: 1685-94. PMID 20133354 DOI: 10.1098/rspb.2009.2214  1
2010 Andrews KR, Karczmarski L, Au WW, Rickards SH, Vanderlip CA, Bowen BW, Gordon Grau E, Toonen RJ. Rolling stones and stable homes: social structure, habitat diversity and population genetics of the Hawaiian spinner dolphin (Stenella longirostris). Molecular Ecology. 19: 732-48. PMID 20089122 DOI: 10.1111/j.1365-294X.2010.04521.x  1
2010 Daly-Engel TS, Grubbs RD, Feldheim KA, Bowen BW, Toonen RJ. Is multiple mating beneficial or unavoidable? Low multiple paternity and genetic diversity in the shortspine spurdog Squalus mitsukurii Marine Ecology Progress Series. 403: 255-267. DOI: 10.3354/meps08417  1
2010 Concepcion GT, Kahng SE, Crepeau MW, Franklin EC, Coles SL, Toonen RJ. Resolving natural ranges and marine invasions in a globally distributed octocoral (genus Carijoa) Marine Ecology Progress Series. 401: 113-127. DOI: 10.3354/meps08364  1
2010 Gaither MR, Toonen RJ, Robertson DR, Planes S, Bowen BW. Genetic evaluation of marine biogeographical barriers: Perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus) Journal of Biogeography. 37: 133-147. DOI: 10.1111/j.1365-2699.2009.02188.x  1
2010 Wagner D, Brugler MR, Opresko DM, France SC, Montgomery AD, Toonen RJ. Using morphometrics, in situ observations and genetic characters to distinguish among commercially valuable Hawaiian black coral species; A redescription of Antipathes grandis Verrill, 1928 (Antipatharia: Antipathidae) Invertebrate Systematics. 24: 271-290. DOI: 10.1071/IS10004  1
2010 Gaither MR, Toonen RJ, Sorenson L, Bowen BW. Isolation and characterization of microsatellite markers for the crimson jobfish, pristipomoides filamentosus (Lutjanidae) Conservation Genetics Resources. 2: 169-172. DOI: 10.1007/s12686-009-9119-3  1
2010 Concepcion GT, Polato NR, Baums IB, Toonen RJ. Development of microsatellite markers from four hawaiian corals: Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobata Conservation Genetics Resources. 2: 11-15. DOI: 10.1007/s12686-009-9118-4  1
2010 Kahng SE, Garcia-Sais JR, Spalding HL, Brokovich E, Wagner D, Weil E, Hinderstein L, Toonen RJ. Community ecology of mesophotic coral reef ecosystems Coral Reefs. 1-21. DOI: 10.1007/s00338-010-0593-6  1
2010 Forsman ZH, Martinez JA, Maragos JE, Toonen RJ. Resurrection of Porites hawaiiensis Vaughan, 1907; a Hawaiian coral obscured by small size, cryptic habitat, and confused taxonomy Zootaxa. 67-68.  1
2009 Chan YL, Pochon X, Fisher MA, Wagner D, Concepcion GT, Kahng SE, Toonen RJ, Gates RD. Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris. Bmc Ecology. 9: 21. PMID 19747389 DOI: 10.1186/1472-6785-9-21  1
2009 Keever CC, Sunday J, Puritz JB, Addison JA, Toonen RJ, Grosberg RK, Hart MW. Discordant distribution of populations and genetic variation in a sea star with high dispersal potential. Evolution; International Journal of Organic Evolution. 63: 3214-27. PMID 19663996 DOI: 10.1111/j.1558-5646.2009.00801.x  1
2009 Forsman ZH, Barshis DJ, Hunter CL, Toonen RJ. Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites. Bmc Evolutionary Biology. 9: 45. PMID 19239678 DOI: 10.1186/1471-2148-9-45  1
2009 Schultz JK, Baker JD, Toonen RJ, Bowen BW. Extremely low genetic diversity in the endangered Hawaiian monk seal (Monachus schauinslandi). The Journal of Heredity. 100: 25-33. PMID 18815116 DOI: 10.1093/jhered/esn077  1
2009 Weersing K, Toonen RJ. Population genetics, larval dispersal, and connectivity in marine systems Marine Ecology Progress Series. 393: 1-12. DOI: 10.3354/meps08287  1
2009 Wagner D, Kahng SE, Toonen RJ. Observations on the life history and feeding ecology of a specialized nudibranch predator (Phyllodesmium poindimiei), with implications for biocontrol of an invasive octocoral (Carijoa riisei) in Hawaii Journal of Experimental Marine Biology and Ecology. 372: 64-74. DOI: 10.1016/j.jembe.2009.02.007  1
2009 Ben-Horin T, Iacchei M, Selkoe KA, Mai TT, Toonen RJ. Characterization of eight polymorphic microsatellite loci for the California spiny lobster, panulirus interruptus and cross-amplification in other achelate lobsters Conservation Genetics Resources. 1: 193-197. DOI: 10.1007/s12686-009-9047-2  1
2009 Selkoe KA, Halpern BS, Ebert CM, Franklin EC, Selig ER, Casey KS, Bruno J, Toonen RJ. A map of human impacts to a "pristine" coral reef ecosystem, the Papahānaumokuākea Marine National Monument Coral Reefs. 28: 635-650. DOI: 10.1007/s00338-009-0490-z  1
2009 Eble JA, Toonen RJ, Bowen BW. Endemism and dispersal: Comparative phylogeography of three surgeonfishes across the Hawaiian Archipelago Marine Biology. 156: 689-698. DOI: 10.1007/s00227-008-1119-4  1
2008 White C, Toonen RJ. Isolation and characterization of polymorphic microsatellite and COI loci from the whelk Kelletia kelletii. Molecular Ecology Resources. 8: 881-3. PMID 21585918 DOI: 10.1111/j.1755-0998.2008.02097.x  1
2008 Bienfang P, Oben B, Defelice S, Moeller P, Huncik K, Oben P, Toonen R, Daly-Engel T, Bowen B. Ciguatera: The detection of neurotoxins in carnivorous reef fish from the coast of Cameroon, West Africa African Journal of Marine Science. 30: 533-540. DOI: 10.2989/AJMS.2008.  1
2008 Concepcion GT, Crepeau MW, Wagner D, Kahng SE, Toonen RJ. An alternative to ITS, a hypervariable, single-copy nuclear intron in corals, and its use in detecting cryptic species within the octocoral genus Carijoa Coral Reefs. 27: 323-336. DOI: 10.1007/s00338-007-0323-x  1
2008 Selkoe KA, Halpern BS, Toonen RJ. Evaluating anthropogenic threats to the Northwestern Hawaiian Islands Aquatic Conservation: Marine and Freshwater Ecosystems. 18: 1149-1165. DOI: 10.1002/aqc.961  1
2007 Bird CE, Holland BS, Bowen BW, Toonen RJ. Contrasting phylogeography in three endemic Hawaiian limpets (Cellana spp.) with similar life histories. Molecular Ecology. 16: 3173-86. PMID 17651195 DOI: 10.1111/j.1365-294X.2007.03385.x  1
2007 Faucci A, Toonen RJ, Hadfield MG. Host shift and speciation in a coral-feeding nudibranch. Proceedings. Biological Sciences / the Royal Society. 274: 111-9. PMID 17134995 DOI: 10.1098/rspb.2006.3685  1
2007 Diehl JM, Toonen RJ, Botsford LW. Spatial variability of recruitment in the sand crab Emerita analoga throughout California in relation to wind-driven currents Marine Ecology Progress Series. 350: 1-17. DOI: 10.3354/meps07208  1
2007 Toonen RJ, Tyre AJ. If larvae were smart: A simple model for optimal settlement behavior of competent larvae Marine Ecology Progress Series. 349: 43-61. DOI: 10.3354/meps06963  1
2007 Wares JP, Daley S, Wetzer R, Toonen RJ. An evaluation of cryptic lineages of Idotea balthica (Isopoda: Idoteidae): Morphology and microsatellites Journal of Crustacean Biology. 27: 643-648. DOI: 10.1651/S-2825R.1  1
2007 Daly-Engel TS, Grubbs RD, Bowen BW, Toonen RJ. Frequency of multiple paternity in an unexploited tropical population of sandbar sharks (Carcharhinus plumbeus) Canadian Journal of Fisheries and Aquatic Sciences. 64: 198-204. DOI: 10.1139/F07-005  1
2007 Wagner D, Kahng SE, Toonen RJ. New report of nudibranch predators of the invasive octocoral Carijoa riisei in the Main Hawaiian Islands Coral Reefs. 26: 411. DOI: 10.1007/s00338-007-0232-z  1
2006 Wares JP, Barber PH, Ross-Ibarra J, Sotka EE, Toonen RJ. Mitochondrial DNA and population size. Science (New York, N.Y.). 314: 1388-90; author repl. PMID 17144000 DOI: 10.1126/science.314.5804.1388  1
2006 Selkoe KA, Toonen RJ. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters. 9: 615-29. PMID 16643306 DOI: 10.1111/j.1461-0248.2006.00889.x  1
2006 Concepcion GT, Medina M, Toonen RJ. Noncoding mitochondrial loci for corals Molecular Ecology Notes. 6: 1208-1211. DOI: 10.1111/j.1471-8286.2006.01493.x  1
2006 Daly-Engel TS, Grubbs RD, Holland KN, Toonen RJ, Bowen BW. Assessment of multiple paternity in single litters from three species of carcharhinid sharks in Hawaii Environmental Biology of Fishes. 76: 419-424. DOI: 10.1007/s10641-006-9008-5  1
2006 Andrews KR, Karczmarski L, Au WWL, Rickards SH, Vanderlip CA, Toonen RJ. Patterns of genetic diversity of the Hawaiin spinner dolphin (Stenella longirostris) Atoll Research Bulletin. 65-73.  1
2005 Bowen BW, Bass AL, Soares L, Toonen RJ. Conservation implications of complex population structure: lessons from the loggerhead turtle (Caretta caretta). Molecular Ecology. 14: 2389-402. PMID 15969722 DOI: 10.1111/j.1365-294X.2005.02598.x  1
2005 Knight-Jones EW, Toonen RJ. Foundations of gregariousness in barnacles. 1953. The Journal of Experimental Biology. 208: 1773-4. PMID 15879058 DOI: 10.1242/jeb.01628  1
2005 Toonen RJ, Wee CB. An experimental comparison of sediment-based biological filtration designs for recirculating aquarium systems Aquaculture. 250: 244-255. DOI: 10.1016/j.aquaculture.2005.04.063  1
2004 Toonen RJ, Locke M, Grosberg R. Isolation and characterization of polymorphic microsatellite loci from the Dungeness crab Cancer magister Molecular Ecology Notes. 4: 30-32. DOI: 10.1046/j.1471-8286.2003.00562.x  1
2004 Toonen RJ. Genetic evidence of multiple paternity of broods in the intertidal crab Petrolisthes cinctipes Marine Ecology Progress Series. 270: 259-263.  1
2001 Toonen RJ, Pawlik JR. Foundations of gregariousness: a dispersal polymorphism among the planktonic larvae of a marine invertebrate. Evolution; International Journal of Organic Evolution. 55: 2439-54. PMID 11831660  1
2001 Toonen RJ, Hughes S. Increased throughput for fragment analysis on an ABI PRISM 377 automated sequencer using a membrane comb and STRand software. Biotechniques. 31: 1320-4. PMID 11768661  1
2001 Toonen RJ, Pawlik JR. Settlement of the gregarious tube worm Hydroides dianthus (Polychaeta: Serpulidae). I. Gregarious and nongregarious settlement Marine Ecology Progress Series. 224: 103-114.  1
2001 Toonen RJ, Pawlik JR. Settlement of the gregarious tube worm Hydroides dianthus (Polychaeta: Serpulidae). II. Testing the desperate larva hypothesis Marine Ecology Progress Series. 224: 115-131.  1
1996 Toonen RJ, Pawlik JR. Settlement of the tube worm Hydroides dianthus (Polychaeta: Serpulidae): Cues for gregarious settlement Marine Biology. 126: 725-733.  1
1995 Pawlik JR, Chanas B, Toonen RJ, Fenical W. Defenses of Caribbean sponges against predatory reef fish. I. Chemical deterrency Marine Ecology Progress Series. 127: 183-194.  1
1994 Toonen RJ, Pawlik JR. Foundations of gregariousness [5] Nature. 370: 511-512.  1
1993 Toonen RJ, Fu-Shiang C. Limitations of laboratory assessments of coelenterate predation: Container effects on the prey selection of the Limnomedusa, Proboscidactyla Flavicirrata (Brandt) Journal of Experimental Marine Biology and Ecology. 167: 215-235. DOI: 10.1016/0022-0981(93)90032-J  1
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