Robert J. Toonen - Publications

Affiliations: 
University of Hawai'i, Honolulu, HI, United States 

182 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Montgomery AD, Fenner D, Donahue MJ, Toonen RJ. Community similarity and species overlap between habitats provide insight into the deep reef refuge hypothesis. Scientific Reports. 11: 23787. PMID 34893672 DOI: 10.1038/s41598-021-03128-8  0.329
2021 Timmers MA, Jury CP, Vicente J, Bahr KD, Webb MK, Toonen RJ. Biodiversity of coral reef cryptobiota shuffles but does not decline under the combined stressors of ocean warming and acidification. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34544862 DOI: 10.1073/pnas.2103275118  0.782
2021 Liu SYV, Green J, Briggs D, Hastings R, Jondelius Y, Kensinger S, Leever H, Santos S, Throne T, Cheng C, Madduppa H, Toonen RJ, Gaither MR, Crandall ED. Dongsha Atoll is an important stepping-stone that promotes regional genetic connectivity in the South China Sea. Peerj. 9: e12063. PMID 34540369 DOI: 10.7717/peerj.12063  0.693
2021 Toczydlowski RH, Liggins L, Gaither MR, Anderson TJ, Barton RL, Berg JT, Beskid SG, Davis B, Delgado A, Farrell E, Ghoojaei M, Himmelsbach N, Holmes AE, Queeno SR, Trinh T, ... ... Toonen RJ, et al. Poor data stewardship will hinder global genetic diversity surveillance. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34404731 DOI: 10.1073/pnas.2107934118  0.686
2021 Price MR, Hadfield MG, Knapp ISS, Toonen RJ, Forsman ZH. Evolutionary genomics of endangered Hawaiian tree snails (Achatinellidae: Achatinellinae) for conservation of adaptive capacity. Peerj. 9: e10993. PMID 33981486 DOI: 10.7717/peerj.10993  0.406
2021 Emami-Khoyi A, Knapp IS, Monsanto DM, van Vuuren BJ, Toonen RJ, Teske PR. Genomic divergence and differential gene expression between crustacean ecotypes across a marine thermal gradient. Marine Genomics. 100847. PMID 33637426 DOI: 10.1016/j.margen.2021.100847  0.414
2020 Grottoli AG, Toonen RJ, van Woesik R, Vega Thurber R, Warner ME, McLachlan RH, Price JT, Bahr KD, Baums IB, Castillo K, Coffroth MA, Cunning R, Dobson K, Donahue M, Hench JL, et al. Increasing comparability among coral bleaching experiments. Ecological Applications : a Publication of the Ecological Society of America. e2262. PMID 33222325 DOI: 10.1002/eap.2262  0.778
2020 Kraft DW, Conklin EE, Barba EW, Hutchinson M, Toonen RJ, Forsman ZH, Bowen BW. Genomics versus mtDNA for resolving stock structure in the silky shark (). Peerj. 8: e10186. PMID 33150082 DOI: 10.7717/peerj.10186  0.774
2020 Forsman ZH, Ritson-Williams R, Tisthammer KH, Knapp ISS, Toonen RJ. Host-symbiont coevolution, cryptic structure, and bleaching susceptibility, in a coral species complex (Scleractinia; Poritidae). Scientific Reports. 10: 16995. PMID 33046719 DOI: 10.1038/s41598-020-73501-6  0.4
2020 Riginos C, Crandall ED, Liggins L, Gaither MR, Ewing RB, Meyer C, Andrews KR, Euclide PT, Titus BM, Overgaard Therkildsen N, Salces-Castellano A, Stewart LC, Toonen RJ, Deck J. Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research. Molecular Ecology Resources. PMID 33031625 DOI: 10.1111/1755-0998.13269  0.688
2020 Nielsen ES, Henriques R, Beger M, Toonen RJ, von der Heyden S. Multi-model seascape genomics identifies distinct environmental drivers of selection among sympatric marine species. Bmc Evolutionary Biology. 20: 121. PMID 32938400 DOI: 10.1186/S12862-020-01679-4  0.471
2020 Wepfer PH, Nakajima Y, Sutthacheep M, Radice VZ, Richards Z, Ang P, Terraneo T, Sudek M, Fujimura A, Toonen RJ, Mikheyev AS, Economo EP, Mitarai S. Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean. Molecular Phylogenetics and Evolution. 106905. PMID 32652124 DOI: 10.1016/J.Ympev.2020.106905  0.495
2020 Capel KCC, López C, Moltó-Martín I, Zilberberg C, Creed JC, Knapp ISS, Hernández M, Forsman ZH, Toonen RJ, Kitahara MV. , a new genus of Dendrophylliidae (Cnidaria, Anthozoa, Scleractinia) from the eastern Atlantic. Peerj. 8: e8633. PMID 32211227 DOI: 10.7717/Peerj.8633  0.405
2020 Tisthammer KH, Forsman ZH, Toonen RJ, Richmond RH. Genetic structure is stronger across human-impacted habitats than among islands in the coral . Peerj. 8: e8550. PMID 32110487 DOI: 10.7717/Peerj.8550  0.464
2020 Antaky CC, Conklin EE, Toonen RJ, Knapp ISS, Price MR. Unexpectedly high genetic diversity in a rare and endangered seabird in the Hawaiian Archipelago. Peerj. 8: e8463. PMID 32071808 DOI: 10.7717/Peerj.8463  0.544
2020 Bahr KD, Tran T, Jury CP, Toonen RJ. Abundance, size, and survival of recruits of the reef coral Pocillopora acuta under ocean warming and acidification. Plos One. 15: e0228168. PMID 32017776 DOI: 10.1371/Journal.Pone.0228168  0.761
2020 Bowen BW, Forsman ZH, Whitney JL, Faucci A, Hoban M, Canfield SJ, Johnston EC, Coleman RC, Copus JM, Vicente J, Toonen RJ. Species Radiations in the Sea: What the Flock? The Journal of Heredity. PMID 31943081 DOI: 10.1093/Jhered/Esz075  0.631
2020 Winter KB, Lincoln NK, Berkes F, Alegado RA, Kurashima N, Frank KL, Pascua P, Rii YM, Reppun F, Knapp IS, McClatchey WC, Ticktin T, Smith C, Franklin EC, Oleson K, ... ... Toonen RJ, et al. Ecomimicry in Indigenous resource management: optimizing ecosystem services to achieve resource abundance, with examples from Hawaiʻi Ecology and Society. 25. DOI: 10.5751/Es-11539-250226  0.744
2020 Greene AL, Forsman Z, Toonen RJ, Donahue MJ. CoralCam: A flexible, low-cost ecological monitoring platform Hardwarex. 7. DOI: 10.1016/J.Ohx.2019.E00089  0.337
2020 Cros A, Toonen R, Karl SA. Is post-bleaching recovery of Acropora hyacinthus on Palau via spread of local kin groups? Coral Reefs. 39: 687-699. DOI: 10.1007/S00338-020-01961-3  0.491
2019 Phair NL, Toonen RJ, Knapp ISS, von der Heyden S. Anthropogenic pressures negatively impact genomic diversity of the vulnerable seagrass Zostera capensis. Journal of Environmental Management. 255: 109831. PMID 32063316 DOI: 10.1016/J.Jenvman.2019.109831  0.439
2019 Jury CP, Delano MN, Toonen RJ. High heritability of coral calcification rates and evolutionary potential under ocean acidification. Scientific Reports. 9: 20419. PMID 31892705 DOI: 10.1038/S41598-019-56313-1  0.445
2019 Halász A, Mcfadden CS, Toonen R, Benayahu Y. Re-description of type material of Xenia Lamarck, 1816 (Octocorallia: Xeniidae). Zootaxa. 4652: 201-239. PMID 31716867 DOI: 10.11646/Zootaxa.4652.2.1  0.359
2019 Iguchi A, Yoshioka Y, Forsman ZH, Knapp ISS, Toonen RJ, Hongo Y, Nagai S, Yasuda N. RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea). Bmc Evolutionary Biology. 19: 187. PMID 31615417 DOI: 10.1186/S12862-019-1522-0  0.431
2019 Cunha RL, Forsman ZH, Belderok R, Knapp ISS, Castilho R, Toonen RJ. Rare coral under the genomic microscope: timing and relationships among Hawaiian Montipora. Bmc Evolutionary Biology. 19: 153. PMID 31340762 DOI: 10.1186/S12862-019-1476-2  0.419
2019 Montgomery AD, Fenner D, Toonen RJ. Annotated checklist for stony corals of American Sāmoa with reference to mesophotic depth records. Zookeys. 849: 1-170. PMID 31171897 DOI: 10.3897/Zookeys.849.34763  0.425
2019 Phair NL, Toonen RJ, Knapp I, von der Heyden S. Shared genomic outliers across two divergent population clusters of a highly threatened seagrass. Peerj. 7: e6806. PMID 31106053 DOI: 10.7717/Peerj.6806  0.48
2019 Jury CP, Toonen RJ. Adaptive responses and local stressor mitigation drive coral resilience in warmer, more acidic oceans. Proceedings. Biological Sciences. 286: 20190614. PMID 31088274 DOI: 10.1098/Rspb.2019.0614  0.345
2019 Moody KN, Wren JLK, Kobayashi DR, Blum MJ, Ptacek MB, Blob RW, Toonen RJ, Schoenfuss HL, Childress MJ. Evidence of local adaptation in a waterfall-climbing Hawaiian goby fish derived from coupled biophysical modeling of larval dispersal and post-settlement selection. Bmc Evolutionary Biology. 19: 88. PMID 30975077 DOI: 10.1186/S12862-019-1413-4  0.366
2019 Vicente J, Ríos JA, Zea S, Toonen RJ. Molecular and morphological congruence of three new cryptic spp. in the Caribbean. Peerj. 7: e6371. PMID 30746308 DOI: 10.7717/Peerj.6371  0.44
2019 Crandall ED, Toonen RJ, Selkoe KA. A coalescent sampler successfully detects biologically meaningful population structure overlooked by -statistics. Evolutionary Applications. 12: 255-265. PMID 30697337 DOI: 10.1111/Eva.12712  0.425
2019 VICENTE J, TOONEN RJ, BOWEN BW. Hawaiian green turtles graze on bioeroding sponges at Maunalua Bay, O‘ahu, Hawai‘i Galaxea, Journal of Coral Reef Studies. 21: 3-4. DOI: 10.3755/Galaxea.21.1_3  0.533
2019 Johnson G, Taylor B, Robbins W, Franklin E, Toonen R, Bowen B, Choat J. Diversity and Structure of Parrotfish Assemblages across the Northern Great Barrier Reef Diversity. 11: 14. DOI: 10.3390/D11010014  0.793
2019 Veazey L, Williams O, Wade R, Toonen R, Spalding HL. Present-Day Distribution and Potential Spread of the Invasive Green Alga Avrainvillea amadelpha Around the Main Hawaiian Islands Frontiers in Marine Science. 6. DOI: 10.3389/Fmars.2019.00402  0.407
2019 Crandall ED, Riginos C, Bird CE, Liggins L, Treml E, Beger M, Barber PH, Connolly SR, Cowman PF, DiBattista JD, Eble JA, Magnuson SF, Horne JB, Kochzius M, Lessios HA, ... ... Toonen RJ, et al. The molecular biogeography of the Indo-Pacific: testing hypotheses with multispecies genetic patterns Global Ecology and Biogeography. 28: 943-960. DOI: 10.1111/Geb.12905  0.813
2018 Price MR, Forsman ZH, Knapp I, Toonen RJ, Hadfield MG. A comparison of mitochondrial genomes from five species in three genera suggests polyphyly in the subfamily Achatinellinae (Gastropoda: Pulmonata: Stylommatophora: Achatinellidae). Mitochondrial Dna. Part B, Resources. 3: 611-612. PMID 33474261 DOI: 10.1080/23802359.2018.1473737  0.344
2018 Barshis DJ, Birkeland C, Toonen RJ, Gates RD, Stillman JH. High-frequency temperature variability mirrors fixed differences in thermal limits of the massive coral (Dana, 1846). The Journal of Experimental Biology. PMID 30305375 DOI: 10.1242/Jeb.188581  0.382
2018 Copus JM, Montgomery WL, Forsman ZH, Bowen BW, Toonen RJ. Geopolitical species revisited: genomic and morphological data indicate that the roundtail chub species complex (Teleostei, Cyprinidae) is a single species. Peerj. 6: e5605. PMID 30294509 DOI: 10.7717/Peerj.5605  0.662
2018 Conklin EE, Neuheimer AB, Toonen RJ. Modeled larval connectivity of a multi-species reef fish and invertebrate assemblage off the coast of Moloka'i, Hawai'i. Peerj. 6: e5688. PMID 30280049 DOI: 10.7717/Peerj.5688  0.472
2018 Schuster A, Vargas S, Knapp IS, Pomponi SA, Toonen RJ, Erpenbeck D, Wörheide G. Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model. Bmc Evolutionary Biology. 18: 114. PMID 30021516 DOI: 10.1186/S12862-018-1230-1  0.406
2018 Nielsen ES, Henriques R, Toonen RJ, Knapp ISS, Guo B, von der Heyden S. Complex signatures of genomic variation of two non-model marine species in a homogeneous environment. Bmc Genomics. 19: 347. PMID 29743012 DOI: 10.1186/S12864-018-4721-Y  0.429
2018 Delevaux JMS, Whittier R, Stamoulis KA, Bremer LL, Jupiter S, Friedlander AM, Poti M, Guannel G, Kurashima N, Winter KB, Toonen R, Conklin E, Wiggins C, Knudby A, Goodell W, et al. A linked land-sea modeling framework to inform ridge-to-reef management in high oceanic islands. Plos One. 13: e0193230. PMID 29538392 DOI: 10.1371/Journal.Pone.0193230  0.378
2018 Dudoit ', Iacchei M, Coleman RR, Gaither MR, Browne WE, Bowen BW, Toonen RJ. The little shrimp that could: phylogeography of the circumtropical(Crustacea: Decapoda), reveals divergent Atlantic and Pacific lineages. Peerj. 6: e4409. PMID 29527409 DOI: 10.7717/Peerj.4409  0.851
2018 Johnston EC, Forsman ZH, Toonen RJ. A simple molecular technique for distinguishing species reveals frequent misidentification of Hawaiian corals in the genus. Peerj. 6: e4355. PMID 29441239 DOI: 10.7717/Peerj.4355  0.473
2018 Deck J, Gaither M, Ewing R, Bird C, Davies N, Meyer C, Riginos C, Toonen R, Crandall E. Planning for Field Based Biological Sample Collection: Using the Genomic Observatories Metadatabase Project Interface Biodiversity Information Science and Standards. 2: e25651. DOI: 10.3897/biss.2.25651  0.731
2018 Edmunds PJ, McIlroy SE, Adjeroud M, Ang P, Bergman JL, Carpenter RC, Coffroth MA, Fujimura AG, Hench JL, Holbrook SJ, Leichter JJ, Muko S, Nakajima Y, Nakamura M, Paris CB, ... ... Toonen RJ, et al. Critical Information Gaps Impeding Understanding of the Role of Larval Connectivity Among Coral Reef Islands in an Era of Global Change Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00290  0.433
2018 Forsman Z, Maurin P, Parry M, Chung A, Sartor C, Hixon M, Hughes K, Rodgers K, Knapp I, Gulko D, Franklin E, Del Rio Torres L, Chan N, Wolke C, Gates R, ... Toonen R, et al. The first Hawai‘i workshop for coral restoration & nurseries Marine Policy. 96: 133-135. DOI: 10.1016/J.Marpol.2018.08.009  0.701
2017 Capel KCC, Toonen RJ, Rachid CTCC, Creed JC, Kitahara MV, Forsman Z, Zilberberg C. Clone wars: asexual reproduction dominates in the invasive range of Tubastraea spp. (Anthozoa: Scleractinia) in the South-Atlantic Ocean. Peerj. 5: e3873. PMID 29018611 DOI: 10.7717/Peerj.3873  0.502
2017 Deck J, Gaither MR, Ewing R, Bird CE, Davies N, Meyer C, Riginos C, Toonen RJ, Crandall ED. The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples. Plos Biology. 15: e2002925. PMID 28771471 DOI: 10.1371/Journal.Pbio.2002925  0.762
2017 Johnston EC, Forsman ZH, Flot JF, Schmidt-Roach S, Pinzón JH, Knapp ISS, Toonen RJ. A genomic glance through the fog of plasticity and diversification in Pocillopora. Scientific Reports. 7: 5991. PMID 28729652 DOI: 10.1038/S41598-017-06085-3  0.457
2017 Puritz JB, Keever CC, Addison JA, Barbosa SS, Byrne M, Hart MW, Grosberg RK, Toonen RJ. Life-history predicts past and present population connectivity in two sympatric sea stars. Ecology and Evolution. 7: 3916-3930. PMID 28616188 DOI: 10.1002/Ece3.2938  0.85
2017 McFadden CS, Haverkort-Yeh R, Reynolds AM, Halàsz A, Quattrini AM, Forsman ZH, Benayahu Y, Toonen RJ. Species boundaries in the absence of morphological, ecological or geographical differentiation in the Red Sea octocoral genus Ovabunda (Alcyonacea: Xeniidae). Molecular Phylogenetics and Evolution. PMID 28467886 DOI: 10.1016/J.Ympev.2017.04.025  0.505
2017 Forsman ZH, Knapp ISS, Tisthammer K, Eaton DAR, Belcaid M, Toonen RJ. Coral hybridization or phenotypic variation? Genomic data reveal gene flow between Porites lobata and P. Compressa. Molecular Phylogenetics and Evolution. 111: 132-148. PMID 28366817 DOI: 10.1016/J.Ympev.2017.03.023  0.492
2017 Stamoulis KA, Friedlander AM, Meyer CG, Fernandez-Silva I, Toonen RJ. Coral reef grazer-benthos dynamics complicated by invasive algae in a small marine reserve. Scientific Reports. 7: 43819. PMID 28276458 DOI: 10.1038/Srep43819  0.414
2017 Deck J, Gaither M, Ewing R, Bird C, Davies N, Meyer C, Riginos C, Toonen R, Crandall E. The Genomic Observatories Metadatabase Proceedings of Tdwg. 1: e20508. DOI: 10.3897/tdwgproceedings.1.20508  0.691
2017 Christie MR, Meirmans PG, Gaggiotti OE, Toonen RJ, White C. Disentangling the relative merits and disadvantages of parentage analysis and assignment tests for inferring population connectivity Ices Journal of Marine Science. 74: 1749-1762. DOI: 10.1093/Icesjms/Fsx044  0.435
2017 Cros A, Toonen RJ, Donahue MJ, Karl SA. Connecting Palau’s marine protected areas: a population genetic approach to conservation Coral Reefs. 36: 735-748. DOI: 10.1007/S00338-017-1565-X  0.463
2016 Price MR, Forsman ZH, Knapp IS, Toonen RJ, Hadfield MG. The complete mitochondrial genome of (Gastropoda: Pulmonata: Stylommatophora: Achatinellidae). Mitochondrial Dna. Part B, Resources. 1: 666-668. PMID 33473590 DOI: 10.1080/23802359.2016.1219631  0.31
2016 Wren JL, Kobayashi DR, Jia Y, Toonen RJ. Modeled Population Connectivity across the Hawaiian Archipelago. Plos One. 11: e0167626. PMID 27930680 DOI: 10.1371/Journal.Pone.0167626  0.401
2016 Cros A, Toonen RJ, Davies SW, Karl SA. Population genetic structure between Yap and Palau for the coral Acropora hyacinthus. Peerj. 4: e2330. PMID 27602294 DOI: 10.7717/Peerj.2330  0.449
2016 Veazey LM, Franklin EC, Kelley C, Rooney J, Frazer LN, Toonen RJ. The implementation of rare events logistic regression to predict the distribution of mesophotic hard corals across the main Hawaiian Islands. Peerj. 4: e2189. PMID 27441122 DOI: 10.7717/Peerj.2189  0.705
2016 Bowen BW, Gaither MR, DiBattista JD, Iacchei M, Andrews KR, Grant WS, Toonen RJ, Briggs JC. Comparative phylogeography of the ocean planet. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432963 DOI: 10.1073/Pnas.1602404113  0.843
2016 Selkoe KA, Gaggiotti OE, Treml EA, Wren JL, Donovan MK, Toonen RJ. The DNA of coral reef biodiversity: predicting and protecting genetic diversity of reef assemblages. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27122569 DOI: 10.1098/Rspb.2016.0354  0.529
2016 Selkoe K, D’Aloia C, Crandall E, Iacchei M, Liggins L, Puritz J, von der Heyden S, Toonen R. A decade of seascape genetics: contributions to basic and applied marine connectivity Marine Ecology Progress Series. 554: 1-19. DOI: 10.3354/Meps11792  0.821
2016 Oyafuso ZS, Toonen RJ, Franklin EC. Temporal and spatial trends in prey composition of wahoo Acanthocybium solandri: A diet analysis from the central North Pacific Ocean using visual and DNA bar-coding techniques Journal of Fish Biology. 88: 1501-1523. DOI: 10.1111/Jfb.12928  0.726
2016 Iacchei M, Gaither MR, Bowen BW, Toonen RJ. Testing dispersal limits in the sea: Range-wide phylogeography of the pronghorn spiny lobster Panulirus penicillatus Journal of Biogeography. DOI: 10.1111/Jbi.12689  0.781
2016 Dibattista JD, Roberts MB, Bouwmeester J, Bowen BW, Coker DJ, Lozano-Cortés DF, Howard Choat J, Gaither MR, Hobbs JPA, Khalil MT, Kochzius M, Myers RF, Paulay G, Robitzch VSN, Saenz-Agudelo P, ... ... Toonen RJ, et al. A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea Journal of Biogeography. 43: 423-439. DOI: 10.1111/Jbi.12649  0.796
2016 Dibattista JD, Howard Choat J, Gaither MR, Hobbs JPA, Lozano-Cortés DF, Myers RF, Paulay G, Rocha LA, Toonen RJ, Westneat MW, Berumen ML. On the origin of endemic species in the Red Sea Journal of Biogeography. 43: 13-30. DOI: 10.1111/Jbi.12631  0.727
2016 Price MR, Forsman ZH, Knapp I, Hadfield MG, Toonen RJ. The complete mitochondrial genome of Achatinella mustelina (Gastropoda: Pulmonata: Stylommatophora) Mitochondrial Dna Part B. 1: 175-177. DOI: 10.1080/23802359.2016.1149787  0.347
2016 Edmunds PJ, Leichter JJ, Johnston EC, Tong EJ, Toonen RJ. Ecological and genetic variation in reef-building corals on four Society Islands Limnology and Oceanography. 61: 543-557. DOI: 10.1002/Lno.10231  0.432
2015 Forsman ZH, Page CA, Toonen RJ, Vaughan D. Growing coral larger and faster: micro-colony-fusion as a strategy for accelerating coral cover. Peerj. 3: e1313. PMID 26500822 DOI: 10.7717/Peerj.1313  0.32
2015 Knapp IS, Forsman ZH, Williams GJ, Toonen RJ, Bell JJ. Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona (Soestella) caerulea), (order: Haplosclerida) to Palmyra Atoll, Central Pacific. Peerj. 3: e1170. PMID 26339548 DOI: 10.7717/Peerj.1170  0.501
2015 Bahr KD, Jokiel PL, Toonen RJ. The unnatural history of Kāne'ohe Bay: coral reef resilience in the face of centuries of anthropogenic impacts. Peerj. 3: e950. PMID 26020007 DOI: 10.7717/Peerj.950  0.812
2015 Forsman Z, Wellington GM, Fox GE, Toonen RJ. Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits. Peerj. 3: e751. PMID 25674364 DOI: 10.7717/Peerj.751  0.474
2015 Hurley KKC, Timmers MA, Godwin LS, Copus JM, Skillings DJ, Toonen RJ. An assessment of shallow and mesophotic reef brachyuran crab assemblages on the south shore of O‘ahu, Hawai‘i Coral Reefs. 1-10. DOI: 10.1007/S00338-015-1382-Z  0.788
2014 Puritz JB, Matz MV, Toonen RJ, Weber JN, Bolnick DI, Bird CE. Demystifying the RAD fad. Molecular Ecology. 23: 5937-42. PMID 25319241 DOI: 10.1111/Mec.12965  0.758
2014 Coleman RR, Gaither MR, Kimokeo B, Stanton FG, Bowen BW, Toonen RJ. Large-scale introduction of the Indo-Pacific damselfish Abudefduf vaigiensis into Hawai'i promotes genetic swamping of the endemic congener A. abdominalis. Molecular Ecology. 23: 5552-65. PMID 25283736 DOI: 10.1111/Mec.12952  0.801
2014 Selkoe KA, Gaggiotti OE, Bowen BW, Toonen RJ. Emergent patterns of population genetic structure for a coral reef community. Molecular Ecology. 23: 3064-79. PMID 24866831 DOI: 10.1111/Mec.12804  0.679
2014 Longenecker K, Chan YL, Toonen RJ, Carlon DB, Hunt TL, Friedlander AM, Demartini EE. Archaeological evidence of validity of fish populations on unexploited reefs as proxy targets for modern populations. Conservation Biology : the Journal of the Society For Conservation Biology. 28: 1322-30. PMID 24665960 DOI: 10.1111/Cobi.12287  0.818
2014 Halász A, McFadden CS, Aharonovich D, Toonen R, Benayahu Y. A revision of the octocoral genus Ovabunda Alderslade, 2001 (Anthozoa, Octocorallia, Xeniidae). Zookeys. 1-41. PMID 24493958 DOI: 10.3897/Zookeys.373.6511  0.399
2014 Iacchei M, O'Malley JM, Toonen RJ. After the gold rush: Population structure of spiny lobsters in Hawaii following a fishery closure and the implications for contemporary spatial management Bulletin of Marine Science. 90: 331-357. DOI: 10.5343/Bms.2013.1042  0.829
2014 Bowen BW, Shanker K, Yasuda N, Maria MC, Von Der Heyden S, Paulay G, Rocha LA, Selkoe KA, Barber PH, Williams ST, Lessios HA, Crandall ED, Bernardi G, Meyer CP, Carpenter KE, ... Toonen RJ, et al. Phylogeography unplugged: Comparative surveys in the genomic era Bulletin of Marine Science. 90: 13-46. DOI: 10.5343/Bms.2013.1007  0.62
2014 Skillings DJ, Bird CE, Toonen RJ. Comparative population structure of two edible Indo-Pacific coral reef sea cucumbers (Echinodermata: Holothuroidea) Bulletin of Marine Science. 90: 359-378. DOI: 10.5343/Bms.2013.1001  0.833
2014 Concepcion GT, Baums IB, Toonen RJ. Regional population structure of montipora capitata across the hawaiian archipelago Bulletin of Marine Science. 90: 257-275. DOI: 10.5343/Bms.2012.1109  0.796
2014 Keyse J, Crandall ED, Toonen RJ, Meyer CP, Treml EA, Riginos C. The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region Bulletin of Marine Science. 90: 47-78. DOI: 10.5343/Bms.2012.1107  0.53
2014 Beger M, Selkoe KA, Treml E, Barber PH, Von Der Heyden S, Crandall ED, Toonen RJ, Riginos C. Evolving coral reef conservation with genetic information Bulletin of Marine Science. 90: 159-185. DOI: 10.5343/Bms.2012.1106  0.445
2014 Marti-Puig P, Forsman ZH, Haverkort-Yeh RD, Knapp ISS, Maragos JE, Toonen RJ. Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not Bulletin of Marine Science. 90: 211-231. DOI: 10.5343/Bms.2012.1080  0.49
2014 Von Der Heyden S, Beger M, Toonen RJ, Van Herwerden L, Juinio-Meñez MA, Ravago-Gotanco R, Fauvelot C, Bernardi G. The application of genetics to marine management and conservation: Examples from the Indo-Pacific Bulletin of Marine Science. 90: 123-158. DOI: 10.5343/Bms.2012.1079  0.443
2014 Baums IB, Scott Godwin L, Franklin EC, Carlon DB, Toonen RJ. Discordant population expansions in four species of coral-associated Pacific hermit crabs (Anomura: Diogenidae) linked to habitat availability resulting from sea-level change Journal of Biogeography. 41: 339-352. DOI: 10.1111/Jbi.12181  0.791
2014 Ylitalo HA, Watling L, Toonen RJ. First description of hatchlings and eggs of Octopus oliveri (Berry, 1914) (Cephalopoda: Octopodidae) Molluscan Research. 34: 79-83. DOI: 10.1080/13235818.2013.860871  0.342
2014 Halàsz A, Reynolds AM, McFadden CS, Toonen RJ, Benayahu Y. Could polyp pulsation be the key to species boundaries in the genus Ovabunda (Octocorallia: Alcyonacea: Xeniidae)? Hydrobiologia. DOI: 10.1007/S10750-014-2106-Z  0.476
2013 Toonen RJ, Puritz JB, Forsman ZH, Whitney JL, Fernandez-Silva I, Andrews KR, Bird CE. ezRAD: a simplified method for genomic genotyping in non-model organisms. Peerj. 1: e203. PMID 24282669 DOI: 10.7717/Peerj.203  0.787
2013 Toonen RJ, Wilhelm T', Maxwell SM, Wagner D, Bowen BW, Sheppard CR, Taei SM, Teroroko T, Moffitt R, Gaymer CF, Morgan L, Lewis N, Sheppard AL, Parks J, Friedlander AM, et al. One size does not fit all: the emerging frontier in large-scale marine conservation. Marine Pollution Bulletin. 77: 7-10. PMID 24246654 DOI: 10.1016/J.Marpolbul.2013.10.039  0.661
2013 Bird CE, Franklin EC, Smith CM, Toonen RJ. Between tide and wave marks: a unifying model of physical zonation on littoral shores. Peerj. 1: e154. PMID 24109544 DOI: 10.7717/Peerj.154  0.757
2013 Luck DG, Forsman ZH, Toonen RJ, Leicht SJ, Kahng SE. Polyphyly and hidden species among Hawai'i's dominant mesophotic coral genera, Leptoseris and Pavona (Scleractinia: Agariciidae). Peerj. 1: e132. PMID 24032091 DOI: 10.7717/Peerj.132  0.445
2013 Keever CC, Puritz JB, Addison JA, Byrne M, Grosberg RK, Toonen RJ, Hart MW. Shallow gene pools in the high intertidal: extreme loss of genetic diversity in viviparous sea stars (Parvulastra). Biology Letters. 9: 20130551. PMID 23925835 DOI: 10.1098/Rsbl.2013.0551  0.844
2013 Iacchei M, Ben-Horin T, Selkoe KA, Bird CE, García-Rodríguez FJ, Toonen RJ. Combined analyses of kinship and FST suggest potential drivers of chaotic genetic patchiness in high gene-flow populations. Molecular Ecology. 22: 3476-94. PMID 23802550 DOI: 10.1111/Mec.12341  0.82
2013 Gaither MR, Bowen BW, Toonen RJ. Population structure in the native range predicts the spread of introduced marine species. Proceedings. Biological Sciences / the Royal Society. 280: 20130409. PMID 23595272 DOI: 10.1098/Rspb.2013.0409  0.794
2013 Andrews KR, Perrin WF, Oremus M, Karczmarski L, Bowen BW, Puritz JB, Toonen RJ. The evolving male: spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers. Molecular Ecology. 22: 2408-23. PMID 23551274 DOI: 10.1111/Mec.12193  0.783
2013 Fernandez-Silva I, Toonen RJ. Optimizing selection of microsatellite loci from 454 pyrosequencing via post-sequencing bioinformatic analyses. Methods in Molecular Biology (Clifton, N.J.). 1006: 101-20. PMID 23546786 DOI: 10.1007/978-1-62703-389-3_7  0.348
2013 Puritz JB, Toonen RJ. Next-generation sequencing for high-throughput molecular ecology: a step-by-step protocol for targeted multilocus genotyping by pyrosequencing. Methods in Molecular Biology (Clifton, N.J.). 1006: 89-99. PMID 23546785 DOI: 10.1007/978-1-62703-389-3_6  0.757
2013 Gaither MR, Aeby G, Vignon M, Meguro Y, Rigby M, Runyon C, Toonen RJ, Wood CL, Bowen BW. An invasive fish and the time-lagged spread of its parasite across the Hawaiian archipelago. Plos One. 8: e56940. PMID 23468894 DOI: 10.1371/Journal.Pone.0056940  0.778
2013 Bowen BW, Rocha LA, Toonen RJ, Karl SA. The origins of tropical marine biodiversity. Trends in Ecology & Evolution. 28: 359-66. PMID 23453048 DOI: 10.1016/J.Tree.2013.01.018  0.622
2013 Fernandez-Silva I, Whitney J, Wainwright B, Andrews KR, Ylitalo-Ward H, Bowen BW, Toonen RJ, Goetze E, Karl SA. Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline. Plos One. 8: e55990. PMID 23424642 DOI: 10.1371/Journal.Pone.0055990  0.605
2013 Forsman ZH, Johnston EC, Brooks AJ, Adam TC, Toonen RJ. Genetic evidence for regional isolation of Pocillopora corals from Moorea Oceanography. 26: 153-155. DOI: 10.5670/Oceanog.2013.58  0.366
2013 Jury CP, Thomas FIM, Atkinson MJ, Toonen RJ. Buffer capacity, ecosystem feedbacks, and seawater chemistry under global change Water (Switzerland). 5: 1303-1325. DOI: 10.3390/W5031303  0.319
2013 Barbosa SS, Klanten SO, Puritz JB, Toonen RJ, Byrne M. Very fine-scale population genetic structure of sympatric asterinid sea stars with benthic and pelagic larvae: Influence of mating system and dispersal potential Biological Journal of the Linnean Society. 108: 821-833. DOI: 10.1111/Bij.12006  0.783
2013 Haverkort-Yeh RD, McFadden CS, Benayahu Y, Berumen M, Halász A, Toonen RJ. A taxonomic survey of Saudi Arabian Red Sea octocorals (Cnidaria: Alcyonacea) Marine Biodiversity. 43: 279-291. DOI: 10.1007/S12526-013-0157-4  0.397
2012 Wagner D, Luck DG, Toonen RJ. The biology and ecology of black corals (Cnidaria: Anthozoa: Hexacorallia: Antipatharia). Advances in Marine Biology. 63: 67-132. PMID 22877611 DOI: 10.1016/B978-0-12-394282-1.00002-8  0.614
2012 Stat M, Baker AC, Bourne DG, Correa AM, Forsman Z, Huggett MJ, Pochon X, Skillings D, Toonen RJ, van Oppen MJ, Gates RD. Molecular delineation of species in the coral holobiont. Advances in Marine Biology. 63: 1-65. PMID 22877610 DOI: 10.1016/B978-0-12-394282-1.00001-6  0.82
2012 Gaither MR, Toonen RJ, Bowen BW. Coming out of the starting blocks: extended lag time rearranges genetic diversity in introduced marine fishes of Hawai'i. Proceedings. Biological Sciences / the Royal Society. 279: 3948-57. PMID 22874747 DOI: 10.1098/Rspb.2012.1481  0.769
2012 Puritz JB, Keever CC, Addison JA, Byrne M, Hart MW, Grosberg RK, Toonen RJ. Extraordinarily rapid life-history divergence between Cryptasterina sea star species. Proceedings. Biological Sciences / the Royal Society. 279: 3914-22. PMID 22810427 DOI: 10.1098/Rspb.2012.1343  0.83
2012 Karl SA, Toonen RJ, Grant WS, Bowen BW. Common misconceptions in molecular ecology: echoes of the modern synthesis. Molecular Ecology. 21: 4171-89. PMID 22574714 DOI: 10.1111/J.1365-294X.2012.05576.X  0.59
2012 Puritz JB, Addison JA, Toonen RJ. Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms. Plos One. 7: e34241. PMID 22470543 DOI: 10.1371/Journal.Pone.0034241  0.762
2012 Timmers MA, Bird CE, Skillings DJ, Smouse PE, Toonen RJ. There's no place like home: crown-of-thorns outbreaks in the central pacific are regionally derived and independent events. Plos One. 7: e31159. PMID 22363570 DOI: 10.1371/Journal.Pone.0031159  0.838
2012 Daly-Engel TS, Seraphin KD, Holland KN, Coffey JP, Nance HA, Toonen RJ, Bowen BW. Global phylogeography with mixed-marker analysis reveals male-mediated dispersal in the endangered scalloped hammerhead shark (Sphyrna lewini). Plos One. 7: e29986. PMID 22253848 DOI: 10.1371/Journal.Pone.0029986  0.67
2012 O'Malley JM, Drazen JC, Popp BN, Gier E, Toonen RJ. Spatial variability in growth and prey availability of lobsters in the Northwestern Hawaiian Islands Marine Ecology Progress Series. 449: 211-220. DOI: 10.3354/Meps09533  0.386
2012 Forsman ZH, Kimokeo BK, Bird CE, Hunter CL, Toonen RJ. Coral farming: Effects of light, water motion and artificial foods Journal of the Marine Biological Association of the United Kingdom. 92: 721-729. DOI: 10.1017/S0025315411001500  0.571
2012 Bird CE, Fernandez-Silva I, Skillings DJ, Toonen RJ. Sympatric Speciation in the Post "Modern Synthesis" Era of Evolutionary Biology Evolutionary Biology. 39: 158-180. DOI: 10.1007/S11692-012-9183-6  0.828
2012 Wagner D, Waller RG, Montgomery AD, Kelley CD, Toonen RJ. Sexual reproduction of the Hawaiian black coral Antipathes griggi (Cnidaria: Antipatharia) Coral Reefs. 31: 795-806. DOI: 10.1007/S00338-012-0882-3  0.533
2011 Toonen RJ, Andrews KR, Baums IB, Bird CE, Concepcion GT, Daly-Engel TS, Eble JA, Faucci A, Gaither MR, Iacchei M, Puritz JB, Schultz JK, Skillings DJ, Timmers MA, Bowen BW. Defining Boundaries for Ecosystem-Based Management: A Multispecies Case Study of Marine Connectivity across the Hawaiian Archipelago. Journal of Marine Biology. 2011. PMID 25505913 DOI: 10.1155/2011/460173  0.778
2011 Eble JA, Toonen RJ, Sorenson L, Basch LV, Papastamatiou YP, Bowen BW. Escaping paradise: Larval export from Hawaii in an Indo-Pacific reef fish, the Yellow Tang (Zebrasoma flavescens). Marine Ecology Progress Series. 428: 245-258. PMID 25505806 DOI: 10.3354/Meps09083  0.66
2011 Work TM, Forsman ZH, Szabó Z, Lewis TD, Aeby GS, Toonen RJ. Inter-specific coral chimerism: genetically distinct multicellular structures associated with tissue loss in Montipora capitata. Plos One. 6: e22869. PMID 21829541 DOI: 10.1371/Journal.Pone.0022869  0.374
2011 Bird CE, Holland BS, Bowen BW, Toonen RJ. Diversification of sympatric broadcast-spawning limpets (Cellana spp.) within the Hawaiian archipelago. Molecular Ecology. 20: 2128-41. PMID 21481050 DOI: 10.1111/J.1365-294X.2011.05081.X  0.76
2011 Puritz JB, Toonen RJ. Coastal pollution limits pelagic larval dispersal. Nature Communications. 2: 226. PMID 21407192 DOI: 10.1038/Ncomms1238  0.797
2011 Stat M, Bird CE, Pochon X, Chasqui L, Chauka LJ, Concepcion GT, Logan D, Takabayashi M, Toonen RJ, Gates RD. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. Plos One. 6: e15854. PMID 21246044 DOI: 10.1371/Journal.Pone.0015854  0.84
2011 Schultz JK, Baker JD, Toonen RJ, Harting AL, Bowen BW. Range-wide genetic connectivity of the Hawaiian monk seal and implications for translocation. Conservation Biology : the Journal of the Society For Conservation Biology. 25: 124-32. PMID 21166713 DOI: 10.1111/J.1523-1739.2010.01615.X  0.663
2011 Wagner D, Pochon X, Irwin L, Toonen RJ, Gates RD. Azooxanthellate? Most Hawaiian black corals contain Symbiodinium. Proceedings. Biological Sciences / the Royal Society. 278: 1323-8. PMID 20961904 DOI: 10.1098/Rspb.2010.1681  0.586
2011 Selkoe KA, Toonen RJ. Marine connectivity: A new look at pelagic larval duration and genetic metrics of dispersal Marine Ecology Progress Series. 436: 291-305. DOI: 10.3354/Meps09238  0.469
2011 Craig MT, Fodrie FJ, Allen LG, Chartier LA, Toonen RJ. Discordant Phylogeographic and Biogeographic Breaks in California Halibut Bulletin, Southern California Academy of Sciences. 110: 141-151. DOI: 10.3160/0038-3872-110.3.141  0.349
2011 Wagner D, Papastamatiou YP, Kosaki RK, Gleason KA, McFall GB, Boland RC, Pyle RL, Toonen RJ. New records of commercially valuable black corals (cnidaria: Antipatharia) from the Northwestern Hawaiian Islands at mesophotic depths Pacific Science. 65: 249-255. DOI: 10.2984/65.2.249  0.581
2011 Timmers MA, Andrews KR, Bird CE, deMaintenton MJ, Brainard RE, Toonen RJ. Widespread Dispersal of the Crown-of-Thorns Sea Star,Acanthaster planci, across the Hawaiian Archipelago and Johnston Atoll Journal of Marine Biology. 2011: 1-10. DOI: 10.1155/2011/934269  0.712
2011 Skillings DJ, Bird CE, Toonen RJ. Gateways to Hawai‘i: Genetic Population Structure of the Tropical Sea CucumberHolothuria atra Journal of Marine Biology. 2011: 1-16. DOI: 10.1155/2011/783030  0.842
2011 Rivera MAJ, Andrews KR, Kobayashi DR, Wren JLK, Kelley C, Roderick GK, Toonen RJ. Genetic Analyses and Simulations of Larval Dispersal Reveal Distinct Populations and Directional Connectivity across the Range of the Hawaiian Grouper (Epinephelus quernus) Journal of Marine Biology. 2011: 1-11. DOI: 10.1155/2011/765353  0.525
2011 Wagner D, Waller RG, Toonen RJ. Sexual reproduction of Hawaiian black corals, with a review of the reproduction of antipatharians (Cnidaria: Anthozoa: Hexacorallia) Invertebrate Biology. 130: 211-225. DOI: 10.1111/J.1744-7410.2011.00233.X  0.559
2011 Dawson MN, Barber PH, González-Guzmán LI, Toonen RJ, Dugan JE, Grosberg RK. Phylogeography of Emerita analoga (Crustacea, Decapoda, Hippidae), an eastern Pacific Ocean sand crab with long-lived pelagic larvae Journal of Biogeography. 38: 1600-1612. DOI: 10.1111/J.1365-2699.2011.02499.X  0.744
2011 Gaither MR, Szabó Z, Crepeau MW, Bird CE, Toonen RJ. Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments Coral Reefs. 30: 329-333. DOI: 10.1007/S00338-010-0687-1  0.737
2010 Forsman ZH, Concepcion GT, Haverkort RD, Shaw RW, Maragos JE, Toonen RJ. Ecomorph or endangered coral? DNA and microstructure reveal hawaiian species complexes: Montipora dilatata/flabellata/turgescens & M. patula/verrilli. Plos One. 5: e15021. PMID 21151995 DOI: 10.1371/Journal.Pone.0015021  0.783
2010 Polato NR, Concepcion GT, Toonen RJ, Baums IB. Isolation by distance across the Hawaiian Archipelago in the reef-building coral Porites lobata. Molecular Ecology. 19: 4661-77. PMID 20887361 DOI: 10.1111/J.1365-294X.2010.04836.X  0.799
2010 Selkoe KA, Watson JR, White C, Horin TB, Iacchei M, Mitarai S, Siegel DA, Gaines SD, Toonen RJ. Taking the chaos out of genetic patchiness: seascape genetics reveals ecological and oceanographic drivers of genetic patterns in three temperate reef species. Molecular Ecology. 19: 3708-26. PMID 20723063 DOI: 10.1111/J.1365-294X.2010.04658.X  0.841
2010 Barshis DJ, Stillman JH, Gates RD, Toonen RJ, Smith LW, Birkeland C. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity? Molecular Ecology. 19: 1705-20. PMID 20345691 DOI: 10.1111/J.1365-294X.2010.04574.X  0.439
2010 Gaither MR, Bowen BW, Toonen RJ, Planes S, Messmer V, Earle J, Ross Robertson D. Genetic consequences of introducing allopatric lineages of Bluestriped Snapper (Lutjanus kasmira) to Hawaii. Molecular Ecology. 19: 1107-21. PMID 20163550 DOI: 10.1111/J.1365-294X.2010.04535.X  0.805
2010 White C, Selkoe KA, Watson J, Siegel DA, Zacherl DC, Toonen RJ. Ocean currents help explain population genetic structure. Proceedings. Biological Sciences / the Royal Society. 277: 1685-94. PMID 20133354 DOI: 10.1098/Rspb.2009.2214  0.494
2010 Andrews KR, Karczmarski L, Au WW, Rickards SH, Vanderlip CA, Bowen BW, Gordon Grau E, Toonen RJ. Rolling stones and stable homes: social structure, habitat diversity and population genetics of the Hawaiian spinner dolphin (Stenella longirostris). Molecular Ecology. 19: 732-48. PMID 20089122 DOI: 10.1111/J.1365-294X.2010.04521.X  0.601
2010 Daly-Engel TS, Grubbs RD, Feldheim KA, Bowen BW, Toonen RJ. Is multiple mating beneficial or unavoidable? Low multiple paternity and genetic diversity in the shortspine spurdog Squalus mitsukurii Marine Ecology Progress Series. 403: 255-267. DOI: 10.3354/Meps08417  0.587
2010 Concepcion GT, Kahng SE, Crepeau MW, Franklin EC, Coles SL, Toonen RJ. Resolving natural ranges and marine invasions in a globally distributed octocoral (genus Carijoa) Marine Ecology Progress Series. 401: 113-127. DOI: 10.3354/Meps08364  0.832
2010 Forsman ZH, Martinez JA, Maragos JE, Toonen RJ. Resurrection of Porites hawaiiensis Vaughan, 1907; a Hawaiian coral obscured by small size, cryptic habitat, and confused taxonomy Zootaxa. 67-68. DOI: 10.11646/Zootaxa.2624.1.3  0.413
2010 Gaither MR, Toonen RJ, Robertson DR, Planes S, Bowen BW. Genetic evaluation of marine biogeographical barriers: Perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus) Journal of Biogeography. 37: 133-147. DOI: 10.1111/J.1365-2699.2009.02188.X  0.792
2010 Wagner D, Brugler MR, Opresko DM, France SC, Montgomery AD, Toonen RJ. Using morphometrics, in situ observations and genetic characters to distinguish among commercially valuable Hawaiian black coral species; A redescription of Antipathes grandis Verrill, 1928 (Antipatharia: Antipathidae) Invertebrate Systematics. 24: 271-290. DOI: 10.1071/Is10004  0.623
2010 Gaither MR, Toonen RJ, Sorenson L, Bowen BW. Isolation and characterization of microsatellite markers for the crimson jobfish, pristipomoides filamentosus (Lutjanidae) Conservation Genetics Resources. 2: 169-172. DOI: 10.1007/S12686-009-9119-3  0.78
2010 Concepcion GT, Polato NR, Baums IB, Toonen RJ. Development of microsatellite markers from four hawaiian corals: Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobata Conservation Genetics Resources. 2: 11-15. DOI: 10.1007/S12686-009-9118-4  0.799
2010 Kahng SE, Garcia-Sais JR, Spalding HL, Brokovich E, Wagner D, Weil E, Hinderstein L, Toonen RJ. Community ecology of mesophotic coral reef ecosystems Coral Reefs. 1-21. DOI: 10.1007/S00338-010-0593-6  0.577
2009 Chan YL, Pochon X, Fisher MA, Wagner D, Concepcion GT, Kahng SE, Toonen RJ, Gates RD. Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris. Bmc Ecology. 9: 21. PMID 19747389 DOI: 10.1186/1472-6785-9-21  0.807
2009 Keever CC, Sunday J, Puritz JB, Addison JA, Toonen RJ, Grosberg RK, Hart MW. Discordant distribution of populations and genetic variation in a sea star with high dispersal potential. Evolution; International Journal of Organic Evolution. 63: 3214-27. PMID 19663996 DOI: 10.1111/J.1558-5646.2009.00801.X  0.848
2009 Forsman ZH, Barshis DJ, Hunter CL, Toonen RJ. Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites. Bmc Evolutionary Biology. 9: 45. PMID 19239678 DOI: 10.1186/1471-2148-9-45  0.627
2009 Schultz JK, Baker JD, Toonen RJ, Bowen BW. Extremely low genetic diversity in the endangered Hawaiian monk seal (Monachus schauinslandi). The Journal of Heredity. 100: 25-33. PMID 18815116 DOI: 10.1093/Jhered/Esn077  0.654
2009 Weersing K, Toonen RJ. Population genetics, larval dispersal, and connectivity in marine systems Marine Ecology Progress Series. 393: 1-12. DOI: 10.3354/Meps08287  0.499
2009 Wagner D, Kahng SE, Toonen RJ. Observations on the life history and feeding ecology of a specialized nudibranch predator (Phyllodesmium poindimiei), with implications for biocontrol of an invasive octocoral (Carijoa riisei) in Hawaii Journal of Experimental Marine Biology and Ecology. 372: 64-74. DOI: 10.1016/J.Jembe.2009.02.007  0.527
2009 Ben-Horin T, Iacchei M, Selkoe KA, Mai TT, Toonen RJ. Characterization of eight polymorphic microsatellite loci for the California spiny lobster, panulirus interruptus and cross-amplification in other achelate lobsters Conservation Genetics Resources. 1: 193-197. DOI: 10.1007/S12686-009-9047-2  0.821
2009 Selkoe KA, Halpern BS, Ebert CM, Franklin EC, Selig ER, Casey KS, Bruno J, Toonen RJ. A map of human impacts to a "pristine" coral reef ecosystem, the Papahānaumokuākea Marine National Monument Coral Reefs. 28: 635-650. DOI: 10.1007/S00338-009-0490-Z  0.72
2009 Eble JA, Toonen RJ, Bowen BW. Endemism and dispersal: Comparative phylogeography of three surgeonfishes across the Hawaiian Archipelago Marine Biology. 156: 689-698. DOI: 10.1007/S00227-008-1119-4  0.678
2008 White C, Toonen RJ. Isolation and characterization of polymorphic microsatellite and COI loci from the whelk Kelletia kelletii. Molecular Ecology Resources. 8: 881-3. PMID 21585918 DOI: 10.1111/J.1755-0998.2008.02097.X  0.421
2008 Bienfang P, Oben B, Defelice S, Moeller P, Huncik K, Oben P, Toonen R, Daly-Engel T, Bowen B. Ciguatera: The detection of neurotoxins in carnivorous reef fish from the coast of Cameroon, West Africa African Journal of Marine Science. 30: 533-540. DOI: 10.2989/Ajms.2008.30.3.8.642  0.506
2008 Concepcion GT, Crepeau MW, Wagner D, Kahng SE, Toonen RJ. An alternative to ITS, a hypervariable, single-copy nuclear intron in corals, and its use in detecting cryptic species within the octocoral genus Carijoa Coral Reefs. 27: 323-336. DOI: 10.1007/S00338-007-0323-X  0.812
2008 Selkoe KA, Halpern BS, Toonen RJ. Evaluating anthropogenic threats to the Northwestern Hawaiian Islands Aquatic Conservation: Marine and Freshwater Ecosystems. 18: 1149-1165. DOI: 10.1002/Aqc.961  0.417
2007 Bird CE, Holland BS, Bowen BW, Toonen RJ. Contrasting phylogeography in three endemic Hawaiian limpets (Cellana spp.) with similar life histories. Molecular Ecology. 16: 3173-86. PMID 17651195 DOI: 10.1111/J.1365-294X.2007.03385.X  0.756
2007 Faucci A, Toonen RJ, Hadfield MG. Host shift and speciation in a coral-feeding nudibranch. Proceedings. Biological Sciences / the Royal Society. 274: 111-9. PMID 17134995 DOI: 10.1098/Rspb.2006.3685  0.398
2007 Diehl JM, Toonen RJ, Botsford LW. Spatial variability of recruitment in the sand crab Emerita analoga throughout California in relation to wind-driven currents Marine Ecology Progress Series. 350: 1-17. DOI: 10.3354/Meps07208  0.326
2007 Toonen RJ, Tyre AJ. If larvae were smart: A simple model for optimal settlement behavior of competent larvae Marine Ecology Progress Series. 349: 43-61. DOI: 10.3354/Meps06963  0.345
2007 Wares JP, Daley S, Wetzer R, Toonen RJ. An evaluation of cryptic lineages of Idotea balthica (Isopoda: Idoteidae): Morphology and microsatellites Journal of Crustacean Biology. 27: 643-648. DOI: 10.1651/S-2825R.1  0.747
2007 Daly-Engel TS, Grubbs RD, Bowen BW, Toonen RJ. Frequency of multiple paternity in an unexploited tropical population of sandbar sharks (Carcharhinus plumbeus) Canadian Journal of Fisheries and Aquatic Sciences. 64: 198-204. DOI: 10.1139/F07-005  0.53
2007 Wagner D, Kahng SE, Toonen RJ. New report of nudibranch predators of the invasive octocoral Carijoa riisei in the Main Hawaiian Islands Coral Reefs. 26: 411. DOI: 10.1007/S00338-007-0232-Z  0.491
2006 Wares JP, Barber PH, Ross-Ibarra J, Sotka EE, Toonen RJ. Mitochondrial DNA and population size. Science (New York, N.Y.). 314: 1388-90; author repl. PMID 17144000 DOI: 10.1126/science.314.5804.1388  0.588
2006 Selkoe KA, Toonen RJ. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters. 9: 615-29. PMID 16643306 DOI: 10.1111/J.1461-0248.2006.00889.X  0.402
2006 Concepcion GT, Medina M, Toonen RJ. Noncoding mitochondrial loci for corals Molecular Ecology Notes. 6: 1208-1211. DOI: 10.1111/J.1471-8286.2006.01493.X  0.787
2006 Daly-Engel TS, Grubbs RD, Holland KN, Toonen RJ, Bowen BW. Assessment of multiple paternity in single litters from three species of carcharhinid sharks in Hawaii Environmental Biology of Fishes. 76: 419-424. DOI: 10.1007/S10641-006-9008-5  0.583
2005 Bowen BW, Bass AL, Soares L, Toonen RJ. Conservation implications of complex population structure: lessons from the loggerhead turtle (Caretta caretta). Molecular Ecology. 14: 2389-402. PMID 15969722 DOI: 10.1111/J.1365-294X.2005.02598.X  0.624
2004 Toonen RJ. Genetic evidence of multiple paternity of broods in the intertidal crab Petrolisthes cinctipes Marine Ecology Progress Series. 270: 259-263. DOI: 10.3354/Meps270259  0.309
2004 Toonen RJ, Locke M, Grosberg R. Isolation and characterization of polymorphic microsatellite loci from the Dungeness crab Cancer magister Molecular Ecology Notes. 4: 30-32. DOI: 10.1046/J.1471-8286.2003.00562.X  0.682
2001 Toonen RJ, Pawlik JR. Foundations of gregariousness: a dispersal polymorphism among the planktonic larvae of a marine invertebrate. Evolution; International Journal of Organic Evolution. 55: 2439-54. PMID 11831660 DOI: 10.1554/0014-3820(2001)055[2439:Fogadp]2.0.Co;2  0.376
2001 Toonen RJ, Pawlik JR. Settlement of the gregarious tube worm Hydroides dianthus (Polychaeta: Serpulidae). II. Testing the desperate larva hypothesis Marine Ecology Progress Series. 224: 115-131. DOI: 10.3354/Meps224115  0.343
2001 Toonen RJ, Pawlik JR. Settlement of the gregarious tube worm Hydroides dianthus (Polychaeta: Serpulidae). I. Gregarious and nongregarious settlement Marine Ecology Progress Series. 224: 103-114. DOI: 10.3354/Meps224103  0.34
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