Jason T. Ladner - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
ecological genetics, coral reefs

90 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Janke NR, Williamson CHD, Drees KP, Suárez-Esquivel M, Allen AR, Ladner JT, Quance CR, Robbe-Austerman S, O'Callaghan D, Whatmore AM, Foster JT. Global phylogenomic diversity of : spread of a dominant lineage. Frontiers in Microbiology. 14: 1287046. PMID 38094632 DOI: 10.3389/fmicb.2023.1287046  0.391
2023 Ladner JT, Sahl JW. Towards a post-pandemic future for global pathogen genome sequencing. Plos Biology. 21: e3002225. PMID 37527248 DOI: 10.1371/journal.pbio.3002225  0.326
2021 De Luca E, Álvarez-Narváez S, Maboni G, Baptista RP, Nemeth NM, Niedringhaus KD, Ladner JT, Lorch JM, Koroleva G, Lovett S, Palacios GF, Sanchez S. Comparative Genomics Analyses Support the Reclassification of Bisgaard Taxon 40 as gen. nov., With sp. nov. as Type Species: Novel Insights Into the Phylogeny and Virulence Factors of a e Family Member Associated With Mortality Events in Seabirds. Frontiers in Microbiology. 12: 667356. PMID 34880834 DOI: 10.3389/fmicb.2021.667356  0.362
2021 Whitmer SLM, Lo MK, Sazzad HMS, Zufan S, Gurley ES, Sultana S, Amman B, Ladner JT, Rahman MZ, Doan S, Satter SM, Flora MS, Montgomery JM, Nichol ST, Spiropoulou CF, et al. Inference of Nipah virus evolution, 1999-2015. Virus Evolution. 7: veaa062. PMID 34422315 DOI: 10.1093/ve/veaa062  0.358
2020 Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Engelthaler DM, et al. Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity. F1000research. 9: 657. PMID 33500774 DOI: 10.12688/F1000Research.24751.1  0.423
2020 Ladner JT, Larsen BB, Bowers JR, Hepp CM, Bolyen E, Folkerts M, Sheridan K, Pfeiffer A, Yaglom H, Lemmer D, Sahl JW, Kaelin EA, Maqsood R, Bokulich NA, Quirk G, et al. An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona. Mbio. 11. PMID 32887735 DOI: 10.1128/Mbio.02107-20  0.419
2020 Suárez-Esquivel M, Hernández-Mora G, Ruiz-Villalobos N, Barquero-Calvo E, Chacón-Díaz C, Ladner JT, Oviedo-Sánchez G, Foster JT, Rojas-Campos N, Chaves-Olarte E, Thomson NR, Moreno E, Guzmán-Verri C. Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis. Plos Neglected Tropical Diseases. 14: e0008235. PMID 32287327 DOI: 10.1371/Journal.Pntd.0008235  0.402
2020 Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Engelthaler DM, et al. Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity F1000research. 9: 657. DOI: 10.12688/f1000research.24751.1  0.314
2020 Whitmer SLM, Lo MK, Sazzad HMS, Zufan S, Gurley ES, Sultana S, Amman B, Ladner JT, Rahman MZ, Doan S, Satter SM, Flora MS, Montgomery JM, Nichol ST, Spiropoulou CF, et al. Inference of Nipah virus Evolution, 1999-2015 Virus Evolution. DOI: 10.1093/Ve/Veaa062  0.306
2019 Wiley MR, Fakoli L, Letizia AG, Welch SR, Ladner JT, Prieto K, Reyes D, Espy N, Chitty JA, Pratt CB, Di Paola N, Taweh F, Williams D, Saindon J, Davis WG, et al. Lassa virus circulating in Liberia: a retrospective genomic characterisation. The Lancet. Infectious Diseases. PMID 31588039 DOI: 10.1016/S1473-3099(19)30486-4  0.396
2019 Grubaugh ND, Saraf S, Gangavarapu K, Watts A, Tan AL, Oidtman RJ, Ladner JT, Oliveira G, Matteson NL, Kraemer MUG, Vogels CBF, Hentoff A, Bhatia D, Stanek D, Scott B, et al. Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic. Cell. 178: 1057-1071.e11. PMID 31442400 DOI: 10.1016/J.Cell.2019.07.018  0.37
2019 Work TM, Dagenais J, Stacy BA, Ladner JT, Lorch JM, Balazs GH, Barquero-Calvo E, Berlowski-Zier BM, Breeden R, Corrales-Gómez N, Gonzalez-Barrientos R, Harris HS, Hernández-Mora G, Herrera-Ulloa Á, Hesami S, et al. A novel host-adapted strain of Salmonella Typhimurium causes renal disease in olive ridley turtles (Lepidochelys olivacea) in the Pacific. Scientific Reports. 9: 9313. PMID 31249336 DOI: 10.1038/S41598-019-45752-5  0.421
2019 Mbala-Kingebeni P, Aziza A, Di Paola N, Wiley MR, Makiala-Mandanda S, Caviness K, Pratt CB, Ladner JT, Kugelman JR, Prieto K, Chitty JA, Larson PA, Beitzel B, Ayouba A, Vidal N, et al. Medical countermeasures during the 2018 Ebola virus disease outbreak in the North Kivu and Ituri Provinces of the Democratic Republic of the Congo: a rapid genomic assessment. The Lancet. Infectious Diseases. PMID 31000464 DOI: 10.1016/S1473-3099(19)30118-5  0.421
2019 Ladner JT, Grubaugh ND, Pybus OG, Andersen KG. Precision epidemiology for infectious disease control. Nature Medicine. 25: 206-211. PMID 30728537 DOI: 10.1038/S41591-019-0345-2  0.375
2019 Jansen van Vuren P, Ladner JT, Grobbelaar AA, Wiley MR, Lovett S, Allam M, Ismail A, le Roux C, Weyer J, Moolla N, Storm N, Kgaladi J, Sanchez-Lockhart M, Conteh O, Palacios G, et al. Phylodynamic Analysis of Ebola Virus Disease Transmission in Sierra Leone. Viruses. 11. PMID 30654482 DOI: 10.3390/V11010071  0.377
2019 Grubaugh ND, Ladner JT, Lemey P, Pybus OG, Rambaut A, Holmes EC, Andersen KG. Tracking virus outbreaks in the twenty-first century. Nature Microbiology. 4: 10-19. PMID 30546099 DOI: 10.1038/S41564-018-0296-2  0.384
2018 Oliveira DBL, Durigon GS, Mendes ÉA, Ladner JT, Andreata-Santos R, Araujo DB, Botosso VF, Paola ND, Neto DFL, Cunha MP, Braconi CT, Alves RPS, Jesus MR, Pereira LR, Melo SR, et al. Persistence and Intra-Host Genetic Evolution of Zika Virus Infection in Symptomatic Adults: A Special View in the Male Reproductive System. Viruses. 10. PMID 30405055 DOI: 10.3390/V10110615  0.358
2018 Lowen RG, Bocan TM, Kane CD, Cazares LH, Kota KP, Ladner JT, Nasar F, Pitt L, Smith DR, Soloveva V, Sun MG, Zeng X, Bavari S. Countering Zika Virus: The USAMRIID Response. Advances in Experimental Medicine and Biology. 1062: 303-318. PMID 29845541 DOI: 10.1007/978-981-10-8727-1_21  0.355
2018 Whitmer SLM, Ladner JT, Wiley MR, Patel K, Dudas G, Rambaut A, Sahr F, Prieto K, Shepard SS, Carmody E, Knust B, Naidoo D, Deen G, Formenty P, Nichol ST, et al. Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors. Cell Reports. 22: 1159-1168. PMID 29386105 DOI: 10.1016/J.Celrep.2018.01.008  0.37
2018 Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, et al. Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species". Genome Announcements. 6. PMID 29348328 DOI: 10.1128/Genomea.01144-17  0.359
2017 Golden JW, Beitzel B, Ladner JT, Mucker EM, Kwilas SA, Palacios G, Hooper JW. An attenuated Machupo virus with a disrupted L-segment intergenic region protects guinea pigs against lethal Guanarito virus infection. Scientific Reports. 7: 4679. PMID 28680057 DOI: 10.1038/S41598-017-04889-X  0.327
2017 Costa-da-Silva AL, Ioshino RS, Petersen V, Lima AF, Cunha MDP, Wiley MR, Ladner JT, Prieto K, Palacios G, Costa DD, Suesdek L, Zanotto PMA, Capurro ML. First report of naturally infected Aedes aegypti with chikungunya virus genotype ECSA in the Americas. Plos Neglected Tropical Diseases. 11: e0005630. PMID 28614394 DOI: 10.1371/Journal.Pntd.0005630  0.389
2017 Ruedas JB, Ladner J, Ettinger CR, Gummuluru S, Palacios G, Connor JH. Spontaneous mutation at amino acid 544 of the Ebola glycoprotein potentiates virus entry and selection in tissue culture. Journal of Virology. PMID 28539437 DOI: 10.1128/Jvi.00392-17  0.33
2017 Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States. Nature. PMID 28538723 DOI: 10.1038/Nature22400  0.401
2017 Villa EC, Maruyama SR, de Miranda-Santos IKF, Palacios G, Ladner JT. Complete Coding Genome Sequence for Mogiana Tick Virus, a Jingmenvirus Isolated from Ticks in Brazil. Genome Announcements. 5. PMID 28473376 DOI: 10.1128/Genomea.00232-17  0.398
2017 Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. PMID 28405027 DOI: 10.1038/Nature22040  0.381
2017 Pespeni MH, Ladner JT, Moczek AP. Signals of selection in conditionally expressed genes in the diversification of three horned beetle species. Journal of Evolutionary Biology. PMID 28379613 DOI: 10.1111/Jeb.13079  0.7
2017 Chance T, Chua J, Toothman RG, Ladner JT, Nuss JE, Raymond JL, Biot FV, Demons S, Miller L, Halasohoris S, Mou S, Koroleva G, Lovett S, Palacios G, Vietri NJ, et al. A spontaneous mutation in kdsD, a biosynthesis gene for 3 Deoxy-D-manno-Octulosonic Acid, occurred in a ciprofloxacin resistant strain of Francisella tularensis and caused a high level of attenuation in murine models of tularemia. Plos One. 12: e0174106. PMID 28328947 DOI: 10.1371/Journal.Pone.0174106  0.335
2017 Shea AA, Bernhards RC, Cote CK, Chase CJ, Koehler JW, Klimko CP, Ladner JT, Rozak DA, Wolcott MJ, Fetterer DP, Kern SJ, Koroleva GI, Lovett SP, Palacios GF, Toothman RG, et al. Two stable variants of Burkholderia pseudomallei strain MSHR5848 express broadly divergent in vitro phenotypes associated with their virulence differences. Plos One. 12: e0171363. PMID 28187198 DOI: 10.1371/Journal.Pone.0171363  0.388
2016 Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, Settles EW, Busch JD, Sidak-Loftis L, Sahl JW, Thomas A, ... ... Ladner JT, et al. Burkholderia humptydooensis sp. nov., a new species related to Burkholderia thailandensis and the fifth member of the pseudomallei complex. Applied and Environmental Microbiology. PMID 27986727 DOI: 10.1128/Aem.02802-16  0.379
2016 Lovett S, Chase K, Koroleva G, Palacios G, Rozak D, Ladner JT. Complete Genome Sequence of Pigmentation-Negative Yersinia pestis Strain Cadman. Genome Announcements. 4. PMID 27789646 DOI: 10.1128/Genomea.01207-16  0.37
2016 Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, ... ... Ladner J, et al. The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. Mbio. 7. PMID 27651357 DOI: 10.1128/Mbio.00846-16  0.419
2016 Ladner JT, Wiley MR, Beitzel B, Auguste AJ, Dupuis AP, Lindquist ME, Sibley SD, Kota KP, Fetterer D, Eastwood G, Kimmel D, Prieto K, Guzman H, Aliota MT, Reyes D, et al. A Multicomponent Animal Virus Isolated from Mosquitoes. Cell Host & Microbe. PMID 27569558 DOI: 10.1016/J.Chom.2016.07.011  0.402
2016 Blackley DJ, Wiley MR, Ladner JT, Fallah M, Lo T, Gilbert ML, Gregory C, D'ambrozio J, Coulter S, Mate S, Balogun Z, Kugelman J, Nwachukwu W, Prieto K, Yeiah A, et al. Reduced evolutionary rate in reemerged Ebola virus transmission chains. Science Advances. 2: e1600378. PMID 27386513 DOI: 10.1126/Sciadv.1600378  0.353
2016 Folarin OA, Ehichioya D, Schaffner SF, Winnicki SM, Wohl S, Eromon P, West KL, Gladden-Young A, Oyejide NE, Matranga CB, Deme AB, James A, Tomkins-Tinch C, Onyewurunwa K, Ladner JT, et al. Ebola Virus Epidemiology and Evolution in Nigeria. The Journal of Infectious Diseases. PMID 27377746 DOI: 10.1093/Infdis/Jiw190  0.43
2016 Kuhn JH, Wiley MR, Rodriguez SE, Bào Y, Prieto K, Travassos da Rosa AP, Guzman H, Savji N, Ladner JT, Tesh RB, Wada J, Jahrling PB, Bente DA, Palacios G. Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). Viruses. 8. PMID 27294949 DOI: 10.3390/V8060164  0.431
2016 Ladner JT, Kuhn JH, Palacios G. Standard finishing categories for high-throughput sequencing of viral genomes. Revue Scientifique Et Technique (International Office of Epizootics). 35: 43-52. PMID 27217167 DOI: 10.20506/rst.35.1.2416  0.33
2016 Ladner JT, Wiley MR, Prieto K, Yasuda CY, Nagle E, Kasper MR, Reyes D, Vasilakis N, Heang V, Weaver SC, Haddow A, Tesh RB, Sovann L, Palacios G. Complete Genome Sequences of Five Zika Virus Isolates. Genome Announcements. 4. PMID 27174284 DOI: 10.1128/Genomea.00377-16  0.426
2016 Ellison DW, Ladner JT, Buathong R, Alera MT, Wiley MR, Hermann L, Rutvisuttinunt W, Klungthong C, Chinnawirotpisan P, Manasatienkij W, Melendrez MC, Maljkovic Berry I, Thaisomboonsuk B, Ong-Ajchaowlerd P, Kaneechit W, et al. Complete Genome Sequences of Zika Virus Strains Isolated from the Blood of Patients in Thailand in 2014 and the Philippines in 2012. Genome Announcements. 4. PMID 27174274 DOI: 10.1128/Genomea.00359-16  0.416
2016 Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Ketheesan N, Mayo M, Hoffmaster A, Elrod MG, et al. Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor. Genome Announcements. 4. PMID 27103731 DOI: 10.1128/Genomea.00313-16  0.342
2016 Kugelman JR, Rossi CA, Wiley MR, Ladner JT, Nagle ER, Pfeffer BP, Garcia K, Prieto K, Wada J, Kuhn JH, Palacios G. Informing the Historical Record of Experimental Nonhuman Primate Infections with Ebola Virus: Genomic Characterization of USAMRIID Ebola Virus/H.sapiens-tc/COD/1995/Kikwit-9510621 Challenge Stock "R4368" and Its Replacement "R4415". Plos One. 11: e0150919. PMID 27002733 DOI: 10.1371/Journal.Pone.0150919  0.378
2016 Daligault HE, Johnson SL, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, et al. Draft Genomes for Eight Burkholderia mallei Isolates from Turkey. Genome Announcements. 4. PMID 26744368 DOI: 10.1128/Genomea.01234-15  0.407
2015 Kilianski A, Carcel P, Yao S, Roth P, Schulte J, Donarum GB, Fochler ET, Hill JM, Liem AT, Wiley MR, Ladner JT, Pfeffer BP, Elliot O, Petrosov A, Jima DD, et al. Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform. Bmc Bioinformatics. 16: 416. PMID 26714571 DOI: 10.1186/S12859-015-0840-5  0.34
2015 Trefry JC, Wollen SE, Nasar F, Shamblin JD, Kern SJ, Bearss JJ, Jefferson MA, Chance TB, Kugelman JR, Ladner JT, Honko AN, Kobs DJ, Wending MQ, Sabourin CL, Pratt WD, et al. Ebola Virus Infections in Nonhuman Primates Are Temporally Influenced by Glycoprotein Poly-U Editing Site Populations in the Exposure Material. Viruses. 7: 6739-54. PMID 26703716 DOI: 10.3390/V7122969  0.308
2015 Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, et al. Evolution and Spread of Ebola Virus in Liberia, 2014-2015. Cell Host & Microbe. 18: 659-669. PMID 26651942 DOI: 10.1016/J.Chom.2015.11.008  0.419
2015 Chiang CY, Ulrich RL, Ulrich MP, Eaton B, Ojeda JF, Lane DJ, Kota KP, Kenny TA, Ladner JT, Dickson SP, Kuehl K, Raychaudhuri R, Sun M, Bavari S, Wolcott MJ, et al. Characterization of the murine macrophage response to infection with virulent and avirulent Burkholderia species. Bmc Microbiology. 15: 259. PMID 26545875 DOI: 10.1186/S12866-015-0593-3  0.334
2015 Mate SE, Kugelman JR, Nyenswah TG, Ladner JT, Wiley MR, Cordier-Lassalle T, Christie A, Schroth GP, Gross SM, Davies-Wayne GJ, Shinde SA, Murugan R, Sieh SB, Badio M, Fakoli L, et al. Molecular Evidence of Sexual Transmission of Ebola Virus. The New England Journal of Medicine. PMID 26465384 DOI: 10.1056/Nejmoa1509773  0.374
2015 Kugelman JR, Kugelman-Tonos J, Ladner JT, Pettit J, Keeton CM, Nagle ER, Garcia KY, Froude JW, Kuehne AI, Kuhn JH, Bavari S, Zeitlin L, Dye JM, Olinger GG, Sanchez-Lockhart M, et al. Emergence of Ebola Virus Escape Variants in Infected Nonhuman Primates Treated with the MB-003 Antibody Cocktail. Cell Reports. 12: 2111-20. PMID 26365189 DOI: 10.1016/J.Celrep.2015.08.038  0.32
2015 Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, et al. Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone. Cell. 161: 1516-26. PMID 26091036 DOI: 10.1016/J.Cell.2015.06.007  0.415
2015 Kugelman JR, Wiley MR, Mate S, Ladner JT, Beitzel B, Fakoli L, Taweh F, Prieto K, Diclaro JW, Minogue T, Schoepp RJ, Schaecher KE, Pettitt J, Bateman S, Fair J, et al. Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia. Emerging Infectious Diseases. 21: 1135-43. PMID 26079255 DOI: 10.3201/Eid2107.150522  0.417
2015 Palacios G, Wiley MR, Travassos da Rosa AP, Guzman H, Quiroz E, Savji N, Carrera JP, Bussetti AV, Ladner JT, Lipkin WI, Tesh RB. Characterization of the Punta Toro species complex (genus Phlebovirus, family Bunyaviridae). The Journal of General Virology. PMID 25934793 DOI: 10.1099/Vir.0.000170  0.362
2015 Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Li PE, Teshima H, Gibbons HS, Palacios GF, et al. Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor. Genome Announcements. 3. PMID 25931592 DOI: 10.1128/Genomea.00159-15  0.438
2015 Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, et al. Complete genome sequences for 35 biothreat assay-relevant bacillus species. Genome Announcements. 3. PMID 25931591 DOI: 10.1128/Genomea.00151-15  0.418
2015 Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, et al. Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. Genome Announcements. 3. PMID 25931590 DOI: 10.1128/Genomea.00148-15  0.476
2015 Johnson SL, Daligault HE, Davenport KW, Coyne SR, Frey KG, Koroleva GI, Broomall SM, Bishop-Lilly KA, Bruce DC, Chertkov O, Freitas T, Jaissle J, Ladner JT, Rosenzweig CN, Gibbons HS, et al. Genome sequencing of 18 francisella strains to aid in assay development and testing. Genome Announcements. 3. PMID 25931589 DOI: 10.1128/Genomea.00147-15  0.417
2015 Yu GY, Wiley MR, Kugelman JR, Ladner JT, Beitzel BF, Eccleston LT, Morazzani EM, Glass PJ, Palacios GF. Complete coding sequences of eastern equine encephalitis virus and venezuelan equine encephalitis virus strains isolated from human cases. Genome Announcements. 3. PMID 25908124 DOI: 10.1128/Genomea.00243-15  0.381
2015 Whitehouse CA, Ladner JT, Palacios GF. Molecular characterization of plasmid pMoma1of Moraxella macacae, a newly described bacterial pathogen of macaques. Folia Microbiologica. 60: 235-9. PMID 25398380 DOI: 10.1007/S12223-014-0364-9  0.364
2014 Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, et al. Whole-genome assemblies of 56 burkholderia species. Genome Announcements. 2. PMID 25414490 DOI: 10.1128/Genomea.01106-14  0.345
2014 Ladner JT, Wiley MR, Palacios G. Reply to "Expanding the conversation on high-throughput virome sequencing standards to include consideration of microbial contamination sources". Mbio. 5: e02084. PMID 25352625 DOI: 10.1128/Mbio.02084-14  0.364
2014 Bishop-Lilly KA, Frey KG, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, et al. Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ. Genome Announcements. 2. PMID 25342692 DOI: 10.1128/Genomea.01084-14  0.401
2014 Frey KG, Bishop-Lilly KA, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, et al. Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672. Genome Announcements. 2. PMID 25342690 DOI: 10.1128/Genomea.01082-14  0.364
2014 Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Li PE, Meincke L, Munk AC, Palacios GF, et al. Complete Genome Assembly of Corynebacterium sp. Strain ATCC 6931. Genome Announcements. 2. PMID 25342684 DOI: 10.1128/Genomea.01074-14  0.362
2014 Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, et al. Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01. Genome Announcements. 2. PMID 25342683 DOI: 10.1128/Genomea.01073-14  0.399
2014 Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Palacios GF, Redden CL, Scholz MB, et al. Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137. Genome Announcements. 2. PMID 25342682 DOI: 10.1128/Genomea.01070-14  0.368
2014 Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, et al. Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132. Genome Announcements. 2. PMID 25342681 DOI: 10.1128/Genomea.01064-14  0.428
2014 Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, et al. Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains. Genome Announcements. 2. PMID 25342679 DOI: 10.1128/Genomea.01055-14  0.437
2014 Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, et al. Twenty Whole-Genome Bacillus sp. Assemblies. Genome Announcements. 2. PMID 25301645 DOI: 10.1128/Genomea.00958-14  0.309
2014 Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Rosenzweig CN, et al. Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain. Genome Announcements. 2. PMID 25291775 DOI: 10.1128/Genomea.00968-14  0.408
2014 Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, et al. Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687. Genome Announcements. 2. PMID 25291772 DOI: 10.1128/Genomea.00962-14  0.412
2014 Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, et al. Draft Genome Assembly of Neisseria lactamica Type Strain A7515. Genome Announcements. 2. PMID 25291770 DOI: 10.1128/Genomea.00951-14  0.376
2014 Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, et al. Whole-genome sequences of nine francisella isolates. Genome Announcements. 2. PMID 25291764 DOI: 10.1128/Genomea.00941-14  0.397
2014 Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, et al. Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. Genome Announcements. 2. PMID 25291763 DOI: 10.1128/Genomea.00939-14  0.327
2014 Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Li PE, Palacios GF, Redden CL, Scholz MB, et al. Whole-Genome Sequence of Listeria monocytogenes Type Strain 53 XXIII. Genome Announcements. 2. PMID 25258271 DOI: 10.1128/Genomea.00970-14  0.376
2014 Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk C, Palacios GF, et al. Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240. Genome Announcements. 2. PMID 25237030 DOI: 10.1128/Genomea.00938-14  0.376
2014 Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Scholz MB, Teshima H, et al. Draft Genome Assembly of Delftia acidovorans Type Strain 2167. Genome Announcements. 2. PMID 25237026 DOI: 10.1128/Genomea.00917-14  0.414
2014 Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk C, Palacios GF, et al. Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate. Genome Announcements. 2. PMID 25237025 DOI: 10.1128/Genomea.00916-14  0.367
2014 Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, et al. Whole-genome sequences of 24 Brucella strains. Genome Announcements. 2. PMID 25237024 DOI: 10.1128/Genomea.00915-14  0.441
2014 Davenport KW, Daligault HE, Minogue TD, Bruce DC, Chain PS, Coyne SR, Jaissle JG, Koroleva GI, Ladner JT, Li PE, Palacios GF, Scholz MB, Teshima H, Johnson SL. Draft Genome Assembly of Acinetobacter baumannii ATCC 19606. Genome Announcements. 2. PMID 25146140 DOI: 10.1128/Genomea.00832-14  0.385
2014 Ladner JT, Beitzel B, Chain PS, Davenport MG, Donaldson EF, Frieman M, Kugelman JR, Kuhn JH, O'Rear J, Sabeti PC, Wentworth DE, Wiley MR, Yu GY, Sozhamannan S, et al. Standards for sequencing viral genomes in the era of high-throughput sequencing. Mbio. 5: e01360-14. PMID 24939889 DOI: 10.1128/Mbio.01360-14  0.425
2014 Barshis DJ, Ladner JT, Oliver TA, Palumbi SR. Lineage-specific transcriptional profiles of Symbiodinium spp. unaltered by heat stress in a coral host. Molecular Biology and Evolution. 31: 1343-52. PMID 24651035 DOI: 10.1093/Molbev/Msu107  0.672
2014 Ladner JT, Savji N, Lofts L, Travassos da Rosa A, Wiley MR, Gestole MC, Rosen GE, Guzman H, Vasconcelos PF, Nunes MR, J Kochel T, Lipkin WI, Tesh RB, Palacios G. Genomic and phylogenetic characterization of viruses included in the Manzanilla and Oropouche species complexes of the genus Orthobunyavirus, family Bunyaviridae. The Journal of General Virology. 95: 1055-66. PMID 24558222 DOI: 10.1099/Vir.0.061309-0  0.48
2014 Palacios G, Tesh RB, Savji N, Travassos da Rosa APA, Guzman H, Bussetti AV, Desai A, Ladner J, Sanchez-Seco M, Ian Lipkin W. Characterization of the Sandfly fever Naples species complex and description of a new Karimabad species complex (genus Phlebovirus, family Bunyaviridae) Journal of General Virology. 95: 292-300. PMID 24096318 DOI: 10.1099/Vir.0.056614-0  0.379
2013 Ladner JT, Welch TJ, Whitehouse CA, Palacios GF. Genome Sequence of Weissella ceti NC36, an Emerging Pathogen of Farmed Rainbow Trout in the United States. Genome Announcements. 1. PMID 23409274 DOI: 10.1128/Genomea.00187-12  0.399
2013 Ladner JT, Whitehouse CA, Koroleva GI, Palacios GF. Genome Sequence of Moraxella macacae 0408225, a Novel Bacterial Species Isolated from a Cynomolgus Macaque with Epistaxis. Genome Announcements. 1. PMID 23409273 DOI: 10.1128/Genomea.00188-12  0.463
2013 Barshis DJ, Ladner JT, Oliver TA, Seneca FO, Traylor-Knowles N, Palumbi SR. Genomic basis for coral resilience to climate change. Proceedings of the National Academy of Sciences of the United States of America. 110: 1387-92. PMID 23297204 DOI: 10.1073/Pnas.1210224110  0.671
2012 Ladner JT, Barshis DJ, Palumbi SR. Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D. Bmc Evolutionary Biology. 12: 217. PMID 23145489 DOI: 10.1186/1471-2148-12-217  0.579
2012 De Wit P, Pespeni MH, Ladner JT, Barshis DJ, Seneca F, Jaris H, Therkildsen NO, Morikawa M, Palumbi SR. The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis. Molecular Ecology Resources. 12: 1058-67. PMID 22931062 DOI: 10.1111/1755-0998.12003  0.739
2012 Ladner JT, Palumbi SR. Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes. Molecular Ecology. 21: 2224-38. PMID 22439812 DOI: 10.1111/J.1365-294X.2012.05528.X  0.609
2012 Palumbi SR, Vollmer S, Romano S, Oliver T, Ladner J. The role of genes in understanding the evolutionary ecology of reef building corals Evolutionary Ecology. 26: 317-335. DOI: 10.1007/S10682-011-9517-3  0.659
2009 Willett CS, Ladner JT. Investigations of fine-scale phylogeography in Tigriopus californicus reveal historical patterns of population divergence. Bmc Evolutionary Biology. 9: 139. PMID 19549324 DOI: 10.1186/1471-2148-9-139  0.396
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