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209 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yurkovich JT, Evans SJ, Rappaport N, Boore JL, Lovejoy JC, Price ND, Hood LE. The transition from genomics to phenomics in personalized population health. Nature Reviews. Genetics. PMID 38093095 DOI: 10.1038/s41576-023-00674-x  0.446
2023 Watanabe K, Wilmanski T, Baloni P, Robinson M, Garcia GG, Hoopmann MR, Midha MK, Baxter DH, Maes M, Morrone SR, Crebs KM, Kapil C, Kusebauch U, Wiedrick J, Lapidus J, ... ... Hood L, et al. Author Correction: Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers. Communications Biology. 6: 1208. PMID 38012377 DOI: 10.1038/s42003-023-05549-9  0.397
2023 Barak O, Lovelace T, Piekos S, Chu T, Cao Z, Sadovsky E, Mouillet JF, Ouyang Y, Parks WT, Hood L, Price ND, Benos PV, Sadovsky Y. Integrated unbiased multiomics defines disease-independent placental clusters in common obstetrical syndromes. Bmc Medicine. 21: 349. PMID 37679695 DOI: 10.1186/s12916-023-03054-8  0.762
2023 Hwang YM, Wei Q, Piekos SN, Vemuri B, Molani S, Mease P, Hood L, Hadlock JJ. Maternal-fetal outcomes in patients with immune mediated inflammatory diseases, with consideration of comorbidities: a retrospective cohort study in a large U.S. healthcare system. Medrxiv : the Preprint Server For Health Sciences. PMID 37609126 DOI: 10.1101/2023.08.07.23293726  0.754
2023 Piekos SN, Hwang YM, Roper RT, Sorensen T, Price ND, Hood L, Hadlock JJ. Effect of COVID-19 vaccination and booster on maternal-fetal outcomes: a retrospective cohort study. The Lancet. Digital Health. 5: e594-e606. PMID 37537121 DOI: 10.1016/S2589-7500(23)00093-6  0.755
2023 Watanabe K, Wilmanski T, Baloni P, Robinson M, Garcia GG, Hoopmann MR, Midha MK, Baxter DH, Maes M, Morrone SR, Crebs KM, Kapil C, Kusebauch U, Wiedrick J, Lapidus J, ... ... Hood L, et al. Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers. Communications Biology. 6: 768. PMID 37481675 DOI: 10.1038/s42003-023-05128-y  0.466
2023 Hwang YM, Piekos S, Sorensen T, Hood L, Hadlock J. Adoption of a National Prophylactic Anticoagulation Guideline for Hospitalized Pregnant Women with COVID-19: Retrospective Cohort Study. Jmir Public Health and Surveillance. PMID 37311123 DOI: 10.2196/45586  0.741
2023 Watanabe K, Wilmanski T, Diener C, Earls JC, Zimmer A, Lincoln B, Hadlock JJ, Lovejoy JC, Gibbons SM, Magis AT, Hood L, Price ND, Rappaport N. Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention. Nature Medicine. PMID 36941332 DOI: 10.1038/s41591-023-02248-0  0.436
2022 Piekos SN, Price ND, Hood L, Hadlock JJ. The impact of maternal SARS-CoV-2 infection and COVID-19 vaccination on maternal-fetal outcomes. Reproductive Toxicology (Elmsford, N.Y.). 114: 33-43. PMID 36283657 DOI: 10.1016/j.reprotox.2022.10.003  0.758
2022 Baloni P, Arnold M, Buitrago L, Nho K, Moreno H, Huynh K, Brauner B, Louie G, Kueider-Paisley A, Suhre K, Saykin AJ, Ekroos K, Meikle PJ, Hood L, Price ND, et al. Multi-Omic analyses characterize the ceramide/sphingomyelin pathway as a therapeutic target in Alzheimer's disease. Communications Biology. 5: 1074. PMID 36209301 DOI: 10.1038/s42003-022-04011-6  0.481
2022 Piekos SN, Hwang YM, Roper RT, Sorensen T, Price ND, Hood L, Hadlock JJ. The effect of COVID-19 vaccination and booster on maternal-fetal outcomes: a retrospective multicenter cohort study. Medrxiv : the Preprint Server For Health Sciences. PMID 36032974 DOI: 10.1101/2022.08.12.22278727  0.755
2022 Wilmanski T, Kornilov SA, Diener C, Conomos MP, Lovejoy JC, Sebastiani P, Orwoll ES, Hood L, Price ND, Rappaport N, Magis AT, Gibbons SM. Heterogeneity in statin responses explained by variation in the human gut microbiome. Med (New York, N.Y.). 3: 388-405.e6. PMID 35690059 DOI: 10.1016/j.medj.2022.04.007  0.43
2022 Omenn GS, Magis AT, Price ND, Hood L. Personal Dense Dynamic Data Clouds Connect Systems Biomedicine to Scientific Wellness. Methods in Molecular Biology (Clifton, N.J.). 2486: 315-334. PMID 35437729 DOI: 10.1007/978-1-0716-2265-0_15  0.485
2022 Heath L, Earls JC, Magis AT, Kornilov SA, Lovejoy JC, Funk CC, Rappaport N, Logsdon BA, Mangravite LM, Kunkle BW, Martin ER, Naj AC, Ertekin-Taner N, Golde TE, Hood L, et al. Manifestations of Alzheimer's disease genetic risk in the blood are evident in a multiomic analysis in healthy adults aged 18 to 90. Scientific Reports. 12: 6117. PMID 35413975 DOI: 10.1038/s41598-022-09825-2  0.47
2022 Su Y, Yuan D, Chen DG, Ng RH, Wang K, Choi J, Li S, Hong S, Zhang R, Xie J, Kornilov SA, Scherler K, Pavlovitch-Bedzyk AJ, Dong S, Lausted C, ... ... Hood L, et al. Multiple early factors anticipate post-acute COVID-19 sequelae. Cell. PMID 35216672 DOI: 10.1016/j.cell.2022.01.014  0.742
2022 Piekos SN, Roper RT, Hwang YM, Sorensen T, Price ND, Hood L, Hadlock JJ. The effect of maternal SARS-CoV-2 infection timing on birth outcomes: a retrospective multicentre cohort study. The Lancet. Digital Health. PMID 35034863 DOI: 10.1016/S2589-7500(21)00250-8  0.757
2021 Ross MK, Raji C, Lokken KL, Bredesen DE, Roach JC, Funk CC, Price N, Rappaport N, Hood L, Heath JR. Case Study: A Precision Medicine Approach to Multifactorial Dementia and Alzheimer's Disease. Journal of Alzheimer's Disease & Parkinsonism. 11. PMID 35237464  0.56
2021 Diener C, Qin S, Zhou Y, Patwardhan S, Tang L, Lovejoy JC, Magis AT, Price ND, Hood L, Gibbons SM. Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans. Msystems. e0096421. PMID 34519531 DOI: 10.1128/mSystems.00964-21  0.453
2021 Lee JW, Su Y, Baloni P, Chen D, Pavlovitch-Bedzyk AJ, Yuan D, Duvvuri VR, Ng RH, Choi J, Xie J, Zhang R, Murray K, Kornilov S, Smith B, Magis AT, ... ... Hood L, et al. Integrated analysis of plasma and single immune cells uncovers metabolic changes in individuals with COVID-19. Nature Biotechnology. PMID 34489601 DOI: 10.1038/s41587-021-01020-4  0.748
2021 McEwen SC, Merrill DA, Bramen J, Porter V, Panos S, Kaiser S, Hodes J, Ganapathi A, Bell L, Bookheimer T, Glatt R, Rapozo M, Ross MK, Price ND, Kelly D, ... ... Hood L, et al. A systems-biology clinical trial of a personalized multimodal lifestyle intervention for early Alzheimer's disease. Alzheimer's & Dementia (New York, N. Y.). 7: e12191. PMID 34295960 DOI: 10.1002/trc2.12191  0.425
2021 Zimmer A, Korem Y, Rappaport N, Wilmanski T, Baloni P, Jade K, Robinson M, Magis AT, Lovejoy J, Gibbons SM, Hood L, Price ND. The geometry of clinical labs and wellness states from deeply phenotyped humans. Nature Communications. 12: 3578. PMID 34117230 DOI: 10.1038/s41467-021-23849-8  0.444
2021 Arif M, Zhang C, Li X, Güngör C, Çakmak B, Arslantürk M, Tebani A, Özcan B, Subaş O, Zhou W, Piening B, Turkez H, Fagerberg L, Price N, Hood L, et al. iNetModels 2.0: an interactive visualization and database of multi-omics data. Nucleic Acids Research. PMID 33849075 DOI: 10.1093/nar/gkab254  0.472
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, ... ... Hood L, et al. Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. PMID 33731896 DOI: 10.1038/s42255-021-00377-9  0.415
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, ... ... Hood L, et al. Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. 3: 274-286. PMID 33619379 DOI: 10.1038/s42255-021-00348-0  0.439
2020 Su Y, Chen D, Yuan D, Lausted C, Choi J, Dai CL, Voillet V, Duvvuri VR, Scherler K, Troisch P, Baloni P, Qin G, Smith B, Kornilov SA, Rostomily C, ... ... Hood L, et al. Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19. Cell. PMID 33171100 DOI: 10.1016/j.cell.2020.10.037  0.772
2020 Magis AT, Rappaport N, Conomos MP, Omenn GS, Lovejoy JC, Hood L, Price ND. Untargeted longitudinal analysis of a wellness cohort identifies markers of metastatic cancer years prior to diagnosis. Scientific Reports. 10: 16275. PMID 33004987 DOI: 10.1038/s41598-020-73451-z  0.426
2020 Wainberg M, Magis AT, Earls JC, Lovejoy JC, Sinnott-Armstrong N, Omenn GS, Hood L, Price ND. Multiomic blood correlates of genetic risk identify presymptomatic disease alterations. Proceedings of the National Academy of Sciences of the United States of America. 117: 21813-21820. PMID 32817414 DOI: 10.1073/Pnas.2001429117  0.536
2020 Funk CC, Casella AM, Jung S, Richards MA, Rodriguez A, Shannon P, Donovan-Maiye R, Heavner B, Chard K, Xiao Y, Glusman G, Ertekin-Taner N, Golde TE, Toga A, Hood L, et al. Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types. Cell Reports. 32: 108029. PMID 32814038 DOI: 10.1016/J.Celrep.2020.108029  0.718
2020 Su Y, Chen D, Lausted C, Yuan D, Choi J, Dai C, Voillet V, Scherler K, Troisch P, Duvvuri VR, Baloni P, Qin G, Smith B, Kornilov S, Rostomily C, ... ... Hood L, et al. Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories. Biorxiv : the Preprint Server For Biology. PMID 32766585 DOI: 10.1101/2020.07.27.224063  0.77
2020 Levy R, Magis AT, Earls JC, Manor O, Wilmanski T, Lovejoy J, Gibbons SM, Omenn GS, Hood L, Price ND. Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome. Proceedings of the National Academy of Sciences of the United States of America. PMID 32471946 DOI: 10.1073/Pnas.1922498117  0.509
2020 Paquette AG, Hood L, Price ND, Sadovsky Y. Deep phenotyping during pregnancy for predictive and preventive medicine. Science Translational Medicine. 12. PMID 31969484 DOI: 10.1126/Scitranslmed.Aay1059  0.491
2020 Kim TK, Lee I, Cho JH, Canine B, Keller A, Price ND, Hwang D, Carlson G, Hood L. Core transcriptional regulatory circuits in prion diseases. Molecular Brain. 13: 10. PMID 31959236 DOI: 10.1186/S13041-020-0551-3  0.545
2019 Earls JC, Rappaport N, Heath L, Wilmanski T, Magis AT, Schork NJ, Omenn GS, Lovejoy J, Hood L, Price ND. Multi-Omic Biological Age Estimation and Its Correlation With Wellness and Disease Phenotypes: A Longitudinal Study of 3,558 Individuals. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 74: S52-S60. PMID 31724055 DOI: 10.1093/Gerona/Glz220  0.501
2019 Yurkovich JT, Tian Q, Price ND, Hood L. A systems approach to clinical oncology uses deep phenotyping to deliver personalized care. Nature Reviews. Clinical Oncology. PMID 31619755 DOI: 10.1038/S41571-019-0273-6  0.535
2019 Zhou Y, Qin S, Sun M, Tang L, Yan X, Kim TK, Caballero J, Glusman G, Brunkow ME, Soloski MJ, Rebman AW, Scavarda C, Cooper D, Omenn GS, Moritz RL, ... ... Hood L, et al. Measurement of organ-specific and acute-phase blood protein levels in early Lyme disease. Journal of Proteome Research. PMID 31618575 DOI: 10.1021/Acs.Jproteome.9B00569  0.533
2019 Dean KR, Hammamieh R, Mellon SH, Abu-Amara D, Flory JD, Guffanti G, Wang K, Daigle BJ, Gautam A, Lee I, Yang R, Almli LM, Bersani FS, Chakraborty N, Donohue D, ... ... Hood L, et al. Multi-omic biomarker identification and validation for diagnosing warzone-related post-traumatic stress disorder. Molecular Psychiatry. PMID 31501510 DOI: 10.1038/S41380-019-0496-Z  0.521
2019 Wilmanski T, Rappaport N, Earls JC, Magis AT, Manor O, Lovejoy J, Omenn GS, Hood L, Gibbons SM, Price ND. Blood metabolome predicts gut microbiome α-diversity in humans. Nature Biotechnology. PMID 31477923 DOI: 10.1038/S41587-019-0233-9  0.504
2019 Yurkovich JT, Hood L. Blood Is a Window into Health and Disease. Clinical Chemistry. PMID 31171530 DOI: 10.1373/Clinchem.2018.299065  0.325
2019 Zubair N, Conomos MP, Hood L, Omenn GS, Price ND, Spring BJ, Magis AT, Lovejoy JC. Genetic Predisposition Impacts Clinical Changes in a Lifestyle Coaching Program. Scientific Reports. 9: 6805. PMID 31048771 DOI: 10.1038/S41598-019-43058-0  0.504
2019 Knijnenburg TA, Vockley JG, Chambwe N, Gibbs DL, Humphries C, Huddleston KC, Klein E, Kothiyal P, Tasseff R, Dhankani V, Bodian DL, Wong WSW, Glusman G, Mauldin DE, Miller M, ... ... Hood L, et al. Genomic and molecular characterization of preterm birth. Proceedings of the National Academy of Sciences of the United States of America. PMID 30833390 DOI: 10.1073/Pnas.1716314116  0.338
2019 Pearl JR, Colantuoni C, Bergey DE, Funk CC, Shannon P, Basu B, Casella AM, Oshone RT, Hood L, Price ND, Ament SA. Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders. Cell Systems. PMID 30772379 DOI: 10.1016/J.Cels.2019.01.002  0.722
2019 Price N, Price N, Earls J, Rappaport N, Heath L, Wilmanski T, Lovejoy J, Hood L. MULTI-OMIC BIOLOGICAL AGE ESTIMATION, CORRELATION WITH WELLNESS, DISEASE PHENOTYPES: LONGITUDINAL SAMPLE OF 3558 Innovation in Aging. 3: S209-S209. DOI: 10.1093/Geroni/Igz038.761  0.49
2019 Funk CC, Shannon P, Gibbs D, Rappaport N, Allen M, Carrasquillo MM, Ertekin-Taner N, Golde TE, Shmulevich I, Hood L, Price ND. P4-103: CELL-TYPE SPECIFIC MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE Alzheimer's & Dementia. 15: P1314-P1315. DOI: 10.1016/J.Jalz.2019.06.3764  0.517
2019 Roach JC, Hara J, Lovejoy JC, Fridman D, Funk C, Heath LM, Price ND, Hood L, Heim L, Brant-Zawadski M, Shankle WR. P4-017: Coaching For Cognition In Alzheimer'S (Cocoa) Trial Alzheimers & Dementia. 15. DOI: 10.1016/J.Jalz.2019.06.3676  0.456
2019 Heath LM, Earls JC, Magis AT, Kornilov SA, Hood L, Lovejoy JC, Price ND. P2-141: THE MANIFESTATION OF GENETIC RISK FOR ALZHEIMER'S DISEASE IN BLOOD ACROSS ADULTHOOD: A MULTI-OMIC PHENOME-WIDE ASSOCIATION STUDY (PHEWAS) APPROACH Alzheimer's & Dementia. 15: P627-P627. DOI: 10.1016/J.Jalz.2019.06.2548  0.505
2018 Ideker T, Hood L. A Blueprint for Systems Biology. Clinical Chemistry. PMID 30593465 DOI: 10.1373/Clinchem.2018.291062  0.526
2018 Budde M, Friedrichs S, Alliey-Rodriguez N, Ament S, Badner JA, Berrettini WH, Bloss CS, Byerley W, Cichon S, Comes AL, Coryell W, Craig DW, Degenhardt F, Edenberg HJ, Foroud T, ... ... Hood L, et al. Efficient region-based test strategy uncovers genetic risk factors for functional outcome in bipolar disorder. European Neuropsychopharmacology : the Journal of the European College of Neuropsychopharmacology. PMID 30503783 DOI: 10.1016/J.Euroneuro.2018.10.005  0.651
2018 Magis AT, Earls JC, Glusman G, Omenn GS, Lovejoy JC, Price ND, Hood L. Reply to "Precision medicine in the clouds". Nature Biotechnology. 36: 680-682. PMID 30080845 DOI: 10.1038/Nbt.4211  0.454
2018 Chao MJ, Kim KH, Shin JW, Lucente D, Wheeler VC, Li H, Roach JC, Hood L, Wexler NS, Jardim LB, Holmans P, Jones L, Orth M, Kwak S, MacDonald ME, et al. Population-specific genetic modification of Huntington's disease in Venezuela. Plos Genetics. 14: e1007274. PMID 29750799 DOI: 10.1371/Journal.Pgen.1007274  0.315
2018 Trachana K, Bargaje R, Glusman G, Price ND, Huang S, Hood LE. Taking Systems Medicine to Heart. Circulation Research. 122: 1276-1289. PMID 29700072 DOI: 10.1161/Circresaha.117.310999  0.475
2018 Ament SA, Pearl JR, Cantle JP, Bragg RM, Skene PJ, Coffey SR, Bergey DE, Wheeler VC, MacDonald ME, Baliga NS, Rosinski J, Hood LE, Carroll JB, Price ND. Transcriptional regulatory networks underlying gene expression changes in Huntington's disease. Molecular Systems Biology. 14: e7435. PMID 29581148 DOI: 10.15252/Msb.20167435  0.772
2018 Kearney P, Boniface JJ, Price ND, Hood L. The building blocks of successful translation of proteomics to the clinic. Current Opinion in Biotechnology. 51: 123-129. PMID 29427919 DOI: 10.1016/J.Copbio.2017.12.011  0.509
2018 Bennett JC, Hood LE, Dreyer WJ, Potter M. Pillars Article: Evidence for Amino Acid Sequence Differences among Proteins Resembling the L-chain Subunits of Immunoglobulins. J. Mol. Biol. 1965. 12: 81-87. Journal of Immunology (Baltimore, Md. : 1950). 200: 27-37. PMID 29255087  0.473
2017 Ngô HM, Zhou Y, Lorenzi H, Wang K, Kim TK, Zhou Y, Bissati KE, Mui E, Fraczek L, Rajagopala SV, Roberts CW, Henriquez FL, Montpetit A, Blackwell JM, Jamieson SE, ... ... Hood L, et al. Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer. Scientific Reports. 7: 11496. PMID 28904337 DOI: 10.1038/S41598-017-10675-6  0.304
2017 Price ND, Magis AT, Earls JC, Glusman G, Levy R, Lausted C, McDonald DT, Kusebauch U, Moss CL, Zhou Y, Qin S, Moritz RL, Brogaard K, Omenn GS, Lovejoy JC, ... Hood L, et al. A wellness study of 108 individuals using personal, dense, dynamic data clouds. Nature Biotechnology. PMID 28714965 DOI: 10.1038/Nbt.3870  0.536
2017 Ghosh D, Funk CC, Caballero J, Shah N, Rouleau K, Earls JC, Soroceanu L, Foltz G, Cobbs CS, Price ND, Hood L. A Cell-Surface Membrane Protein Signature for Glioblastoma. Cell Systems. PMID 28365151 DOI: 10.1016/J.Cels.2017.03.004  0.477
2017 Ament SA, Pearl JR, Grindeland A, St Claire J, Earls JC, Kovalenko M, Gillis T, Mysore J, Gusella JF, Lee JM, Kwak S, Howland D, Lee MY, Baxter D, Scherler K, ... ... Hood LE, et al. High resolution time-course mapping of early transcriptomic, molecular and cellular phenotypes in Huntington's disease CAG knock-in mice across multiple genetic backgrounds. Human Molecular Genetics. PMID 28334820 DOI: 10.1093/Hmg/Ddx006  0.697
2017 Lausted C, Zhou Y, Lee J, Vellano C, Eterovic KA, Song P, Tang L, Fawcett G, Kim T, Chen K, Geiss G, Meredith G, Mei Q, Demirkan G, Dunaway D, ... ... Hood L, et al. Abstract 2441: NanoString 3D Biology™ technology: simultaneous digital counting of DNA, RNA and protein Cancer Research. 77: 2441-2441. DOI: 10.1158/1538-7445.Am2017-2441  0.301
2017 Ament S, Pearl J, Funk C, Bergey D, Shannon P, Basu B, Hood L, Price N. Genome-Scale Transcriptional Regulatory Network Models of Psychiatric Disorders European Neuropsychopharmacology. 27: S417. DOI: 10.1016/J.Euroneuro.2016.09.465  0.719
2016 Sagner M, McNeil A, Puska P, Auffray C, Price ND, Hood L, Lavie CJ, Han ZG, Chen Z, Brahmachari SK, McEwen BS, Soares MB, Balling R, Epel E, Arena R. The P4 Health Spectrum - A Predictive, Preventive, Personalized and Participatory Continuum for Promoting Healthspan. Progress in Cardiovascular Diseases. PMID 27546358 DOI: 10.1016/J.Pcad.2016.08.002  0.511
2016 Dinov ID, Heavner B, Tang M, Glusman G, Chard K, Darcy M, Madduri R, Pa J, Spino C, Kesselman C, Foster I, Deutsch EW, Price ND, Van Horn JD, Ames J, ... ... Hood L, et al. Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations. Plos One. 11: e0157077. PMID 27494614 DOI: 10.1371/Journal.Pone.0157077  0.509
2016 Kusebauch U, Campbell DS, Deutsch EW, Chu CS, Spicer DA, Brusniak MY, Slagel J, Sun Z, Stevens J, Grimes B, Shteynberg D, Hoopmann MR, Blattmann P, Ratushny AV, Rinner O, ... ... Hood L, et al. Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome. Cell. PMID 27453469 DOI: 10.1016/J.Cell.2016.06.041  0.46
2015 Hood L, Rothenberg EV. Developmental biologist Eric H. Davidson, 1937-2015. Proceedings of the National Academy of Sciences of the United States of America. 112: 13423-5. PMID 26499244 DOI: 10.1073/Pnas.1518876112  0.336
2015 Lee JM, Kim KH, Shin A, Chao MJ, Abu Elneel K, Gillis T, Mysore JS, Kaye JA, Zahed H, Kratter IH, Daub AC, Finkbeiner S, Li H, Roach JC, Goodman N, ... Hood L, et al. Sequence-Level Analysis of the Major European Huntington Disease Haplotype. American Journal of Human Genetics. 97: 435-44. PMID 26320893 DOI: 10.1016/J.Ajhg.2015.07.017  0.322
2015 Toga AW, Foster I, Kesselman C, Madduri R, Chard K, Deutsch EW, Price ND, Glusman G, Heavner BD, Dinov ID, Ames J, Van Horn J, Kramer R, Hood L. Big Biomedical data as the key resource for discovery science. Journal of the American Medical Informatics Association : Jamia. PMID 26198305 DOI: 10.1093/Jamia/Ocv077  0.459
2015 Lin B, Lee H, Yoon JG, Madan A, Wayner E, Tonning S, Hothi P, Schroeder B, Ulasov I, Foltz G, Hood L, Cobbs C. Global analysis of H3K4me3 and H3K27me3 profiles in glioblastoma stem cells and identification of SLC17A7 as a bivalent tumor suppressor gene. Oncotarget. 6: 5369-81. PMID 25749033 DOI: 10.18632/Oncotarget.3030  0.314
2015 Glusman G, Severson A, Dhankani V, Robinson M, Farrah T, Mauldin DE, Stittrich AB, Ament SA, Roach JC, Brunkow ME, Bodian DL, Vockley JG, Shmulevich I, Niederhuber JE, Hood L. Identification of copy number variants in whole-genome data using Reference Coverage Profiles. Frontiers in Genetics. 6: 45. PMID 25741365 DOI: 10.3389/Fgene.2015.00045  0.643
2015 Ament SA, Szelinger S, Glusman G, Ashworth J, Hou L, Akula N, Shekhtman T, Badner JA, Brunkow ME, Mauldin DE, Stittrich AB, Rouleau K, Detera-Wadleigh SD, Nurnberger JI, Edenberg HJ, ... ... Hood L, et al. Rare variants in neuronal excitability genes influence risk for bipolar disorder. Proceedings of the National Academy of Sciences of the United States of America. 112: 3576-81. PMID 25730879 DOI: 10.1073/Pnas.1424958112  0.713
2015 Hood L, Lovejoy JC, Price ND. Integrating big data and actionable health coaching to optimize wellness. Bmc Medicine. 13: 4. PMID 25575752 DOI: 10.1186/S12916-014-0238-7  0.525
2014 Krishna A, Biryukov M, Trefois C, Antony PM, Hussong R, Lin J, Heinäniemi M, Glusman G, Köglsberger S, Boyd O, van den Berg BH, Linke D, Huang D, Wang K, Hood L, et al. Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson's disease. Bmc Genomics. 15: 1154. PMID 25528190 DOI: 10.1186/1471-2164-15-1154  0.315
2014 Gierman HJ, Fortney K, Roach JC, Coles NS, Li H, Glusman G, Markov GJ, Smith JD, Hood L, Coles LS, Kim SK. Whole-genome sequencing of the world's oldest people. Plos One. 9: e112430. PMID 25390934 DOI: 10.1371/Journal.Pone.0112430  0.328
2014 Hu H, Roach JC, Coon H, Guthery SL, Voelkerding KV, Margraf RL, Durtschi JD, Tavtigian SV, Shankaracharya, Wu W, Scheet P, Wang S, Xing J, Glusman G, Hubley R, ... ... Hood L, et al. A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data. Nature Biotechnology. 32: 663-9. PMID 24837662 DOI: 10.1038/Nbt.2895  0.347
2014 Caballero J, Smit AF, Hood L, Glusman G. Realistic artificial DNA sequences as negative controls for computational genomics. Nucleic Acids Research. 42: e99. PMID 24803667 DOI: 10.1093/Nar/Gku356  0.303
2014 Hood L, Price ND. Demystifying disease, democratizing health care. Science Translational Medicine. 6: 225ed5. PMID 24574336 DOI: 10.1126/Scitranslmed.3008665  0.474
2014 Lausted C, Lee I, Zhou Y, Qin S, Sung J, Price ND, Hood L, Wang K. Systems approach to neurodegenerative disease biomarker discovery. Annual Review of Pharmacology and Toxicology. 54: 457-81. PMID 24160693 DOI: 10.1146/Annurev-Pharmtox-011613-135928  0.478
2014 Hood L, Price ND. Promoting Wellness & Demystifying Disease: The 100K Project Clinical Omics. 1: 20-23. DOI: 10.1089/Clinomi.01.03.07  0.473
2013 Flores M, Glusman G, Brogaard K, Price ND, Hood L. P4 medicine: how systems medicine will transform the healthcare sector and society. Personalized Medicine. 10: 565-576. PMID 25342952 DOI: 10.2217/Pme.13.57  0.449
2013 Glusman G, Caballero J, Robinson M, Kutlu B, Hood L. Optimal scaling of digital transcriptomes. Plos One. 8: e77885. PMID 24223126 DOI: 10.1371/Journal.Pone.0077885  0.305
2013 Li XJ, Hayward C, Fong PY, Dominguez M, Hunsucker SW, Lee LW, McLean M, Law S, Butler H, Schirm M, Gingras O, Lamontagne J, Allard R, Chelsky D, Price ND, ... ... Hood L, et al. A blood-based proteomic classifier for the molecular characterization of pulmonary nodules. Science Translational Medicine. 5: 207ra142. PMID 24132637 DOI: 10.1126/Scitranslmed.3007013  0.515
2013 Sung J, Kim PJ, Ma S, Funk CC, Magis AT, Wang Y, Hood L, Geman D, Price ND. Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures. Plos Computational Biology. 9: e1003148. PMID 23935471 DOI: 10.1371/Journal.Pcbi.1003148  0.471
2013 Ko Y, Ament SA, Eddy JA, Caballero J, Earls JC, Hood L, Price ND. Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 110: 3095-100. PMID 23386717 DOI: 10.1073/Pnas.1222897110  0.712
2013 Ruzankina Y, Kutlu B, Wang S, Song Y, Householder D, Martin P, Baran M, Difilippantonio S, Hood L, Dyke TV. Abstract 1809: Analysis of molecular networks that drive astrocytoma initiation and progression. Cancer Research. 73: 1809-1809. DOI: 10.1158/1538-7445.Am2013-1809  0.33
2013 Hood L, Flores MA, Brogaard KR, Price ND. Systems Medicine and the Emergence of Proactive P4 Medicine: Predictive, Preventive, Personalized and Participatory Handbook of Systems Biology. 445-467. DOI: 10.1016/B978-0-12-385944-0.00023-X  0.417
2013 Price ND, Edelman LB, Lee I, Yoo H, Hwang D, Carlson G, Galas DJ, Heath JR, Hood L. Systems Biology and Systems Medicine Genomic and Personalized Medicine. 1: 60-72. DOI: 10.1016/B978-0-12-382227-7.00005-7  0.547
2013 Georgatos F, Ballereau S, Pellet J, Ghanem M, Price N, Hood L, Guo YK, Boutigny D, Auffray C, Balling R, Schneider R. Computational infrastructures for data and knowledge management in systems biology Systems Biology. 1: 377-397. DOI: 10.1007/978-94-007-6803-1_13  0.408
2012 Hood L, Tian Q. Systems approaches to biology and disease enable translational systems medicine. Genomics, Proteomics & Bioinformatics. 10: 181-5. PMID 23084773 DOI: 10.1016/J.Gpb.2012.08.004  0.307
2012 Hood LE, Omenn GS, Moritz RL, Aebersold R, Yamamoto KR, Amos M, Hunter-Cevera J, Locascio L. New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences. Proteomics. 12: 2773-83. PMID 22807061 DOI: 10.1002/Pmic.201270086  0.323
2012 Shi Q, Qin L, Wei W, Geng F, Fan R, Shin YS, Guo D, Hood L, Mischel PS, Heath JR. Single-cell proteomic chip for profiling intracellular signaling pathways in single tumor cells. Proceedings of the National Academy of Sciences of the United States of America. 109: 419-24. PMID 22203961 DOI: 10.1073/Pnas.1110865109  0.495
2012 Tian Q, Price ND, Hood L. Systems cancer medicine: towards realization of predictive, preventive, personalized and participatory (P4) medicine. Journal of Internal Medicine. 271: 111-21. PMID 22142401 DOI: 10.1111/J.1365-2796.2011.02498.X  0.486
2011 Ideker T, Dutkowski J, Hood L. Boosting signal-to-noise in complex biology: prior knowledge is power. Cell. 144: 860-3. PMID 21414478 DOI: 10.1016/J.Cell.2011.03.007  0.461
2011 Fang X, Yoon JG, Li L, Tsai YS, Zheng S, Hood L, Goodlett DR, Foltz G, Lin B. Landscape of the SOX2 protein-protein interactome. Proteomics. 11: 921-34. PMID 21280222 DOI: 10.1002/Pmic.201000419  0.527
2011 Yan X, Ma L, Yi D, Yoon JG, Diercks A, Foltz G, Price ND, Hood LE, Tian Q. A CD133-related gene expression signature identifies an aggressive glioblastoma subtype with excessive mutations. Proceedings of the National Academy of Sciences of the United States of America. 108: 1591-6. PMID 21220328 DOI: 10.1073/Pnas.1018696108  0.466
2011 Fang X, Yoon JG, Li L, Yu W, Shao J, Hua D, Zheng S, Hood L, Goodlett DR, Foltz G, Lin B. The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis. Bmc Genomics. 12: 11. PMID 21211035 DOI: 10.1186/1471-2164-12-11  0.535
2010 Foltz G, Yoon JG, Lee H, Ma L, Tian Q, Hood L, Madan A. Epigenetic regulation of wnt pathway antagonists in human glioblastoma multiforme. Genes & Cancer. 1: 81-90. PMID 21779426 DOI: 10.1177/1947601909356103  0.302
2010 Eddy JA, Hood L, Price ND, Geman D. Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC). Plos Computational Biology. 6: e1000792. PMID 20523739 DOI: 10.1371/Journal.Pcbi.1000792  0.478
2010 Mo F, Mo Q, Chen Y, Goodlett DR, Hood L, Omenn GS, Li S, Lin B. WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis. Bmc Bioinformatics. 11: 219. PMID 20429928 DOI: 10.1186/1471-2105-11-219  0.479
2010 Cheng L, Lu W, Kulkarni B, Pejovic T, Yan X, Chiang JH, Hood L, Odunsi K, Lin B. Analysis of chemotherapy response programs in ovarian cancers by the next-generation sequencing technologies. Gynecologic Oncology. 117: 159-69. PMID 20181382 DOI: 10.1016/J.Ygyno.2010.01.041  0.324
2009 Foltz G, Yoon JG, Lee H, Ryken TC, Sibenaller Z, Ehrich M, Hood L, Madan A. DNA methyltransferase-mediated transcriptional silencing in malignant glioma: A combined whole-genome microarray and promoter array analysis Oncogene. 28: 2667-2677. PMID 19465937 DOI: 10.1038/Onc.2009.122  0.323
2009 Hwang D, Lee IY, Yoo H, Gehlenborg N, Cho JH, Petritis B, Baxter D, Pitstick R, Young R, Spicer D, Price ND, Hohmann JG, Dearmond SJ, Carlson GA, Hood LE. A systems approach to prion disease. Molecular Systems Biology. 5: 252. PMID 19308092 DOI: 10.1038/Msb.2009.10  0.483
2009 Heath JR, Davis ME, Hood L. Nanomedicine targets cancer. Scientific American. 300: 44-51. PMID 19186705 DOI: 10.1038/Scientificamerican0209-44  0.39
2009 Gehlenborg N, Yan W, Lee IY, Yoo H, Nieselt K, Hwang D, Aebersold R, Hood L. Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data. Bioinformatics (Oxford, England). 25: 682-3. PMID 19129212 DOI: 10.1093/Bioinformatics/Btp005  0.323
2009 Price ND, Edelman LB, Lee I, Yoo H, Hwang D, Carlson G, Galas DJ, Heath JR, Hood L. Systems Biology and the Emergence of Systems Medicine Genomic and Personalized Medicine, Two-Vol Set. 74-85. DOI: 10.1016/B978-0-12-369420-1.00006-8  0.598
2008 Fan R, Vermesh O, Srivastava A, Yen BK, Qin L, Ahmad H, Kwong GA, Liu CC, Gould J, Hood L, Heath JR. Integrated barcode chips for rapid, multiplexed analysis of proteins in microliter quantities of blood. Nature Biotechnology. 26: 1373-8. PMID 19029914 DOI: 10.1038/Nbt.1507  0.419
2008 Hood L. Gene regulatory networks and embryonic specification. Proceedings of the National Academy of Sciences of the United States of America. 105: 5951-2. PMID 18417452 DOI: 10.1073/Pnas.0801434105  0.343
2008 Nykter M, Price ND, Aldana M, Ramsey SA, Kauffman SA, Hood LE, Yli-Harja O, Shmulevich I. Gene expression dynamics in the macrophage exhibit criticality. Proceedings of the National Academy of Sciences of the United States of America. 105: 1897-900. PMID 18250330 DOI: 10.1073/Pnas.0711525105  0.46
2008 Price ND, Foltz G, Madan A, Hood L, Tian Q. Systems biology and cancer stem cells. Journal of Cellular and Molecular Medicine. 12: 97-110. PMID 18031300 DOI: 10.1111/J.1582-4934.2007.00151.X  0.495
2007 Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, ... ... Hood L, et al. A predictive model for transcriptional control of physiology in a free living cell. Cell. 131: 1354-65. PMID 18160043 DOI: 10.1016/J.Cell.2007.10.053  0.74
2007 Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, ... ... Hood L, et al. Integration of biological networks and gene expression data using Cytoscape. Nature Protocols. 2: 2366-82. PMID 17947979 DOI: 10.1038/Nprot.2007.324  0.718
2007 Price ND, Trent J, El-Naggar AK, Cogdell D, Taylor E, Hunt KK, Pollock RE, Hood L, Shmulevich I, Zhang W. Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas. Proceedings of the National Academy of Sciences of the United States of America. 104: 3414-9. PMID 17360660 DOI: 10.1073/Pnas.0611373104  0.529
2007 Facciotti MT, Reiss DJ, Pan M, Kaur A, Vuthoori M, Bonneau R, Shannon P, Srivastava A, Donohoe SM, Hood LE, Baliga NS. General transcription factor specified global gene regulation in archaea. Proceedings of the National Academy of Sciences of the United States of America. 104: 4630-5. PMID 17360575 DOI: 10.1073/Pnas.0611663104  0.728
2007 He XC, Yin T, Grindley JC, Tian Q, Sato T, Tao WA, Dirisina R, Porter-Westpfahl KS, Hembree M, Johnson T, Wiedemann LM, Barrett TA, Hood L, Wu H, Li L. PTEN-deficient intestinal stem cells initiate intestinal polyposis. Nature Genetics. 39: 189-98. PMID 17237784 DOI: 10.1038/Ng1928  0.644
2006 Foltz G, Ryu GY, Yoon JG, Nelson T, Fahey J, Frakes A, Lee H, Field L, Zander K, Sibenaller Z, Ryken TC, Vibhakar R, Hood L, Madan A. Genome-wide analysis of epigenetic silencing identifies BEX1 and BEX2 as candidate tumor suppressor genes in malignant glioma. Cancer Research. 66: 6665-74. PMID 16818640 DOI: 10.1158/0008-5472.Can-05-4453  0.314
2006 Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V. The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. Genome Biology. 7: R36. PMID 16686963 DOI: 10.1186/Gb-2006-7-5-R36  0.737
2006 Funk CC, Richards MA, Shannon P, Donovan-Maiye R, Rappaport N, Robinson M, Allen M, Carrasquillo MM, Chakrabarty P, McFarland K, Jung SC, Rodriguez A, Ertekin-Taner N, Golde TE, Hood L, et al. O3-03-01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE Alzheimer's & Dementia. 14: P1014-P1015. DOI: 10.1016/J.Jalz.2018.06.2782  0.695
2005 Hwang D, Smith JJ, Leslie DM, Weston AD, Rust AG, Ramsey S, de Atauri P, Siegel AF, Bolouri H, Aitchison JD, Hood L. A data integration methodology for systems biology: experimental verification. Proceedings of the National Academy of Sciences of the United States of America. 102: 17302-7. PMID 16301536 DOI: 10.1073/Pnas.0508649102  0.314
2005 Tao WA, Wollscheid B, O'Brien R, Eng JK, Li XJ, Bodenmiller B, Watts JD, Hood L, Aebersold R. Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. Nature Methods. 2: 591-8. PMID 16094384 DOI: 10.1038/Nmeth776  0.553
2005 Rowen L, Williams E, Glusman G, Linardopoulou E, Friedman C, Ahearn ME, Seto J, Boysen C, Qin S, Wang K, Kaur A, Bloom S, Hood L, Trask BJ. Interchromosomal segmental duplications explain the unusual structure of PRSS3, the gene for an inhibitor-resistant trypsinogen. Molecular Biology and Evolution. 22: 1712-20. PMID 15901841 DOI: 10.1093/Molbev/Msi166  0.312
2005 Lin B, White JT, Lu W, Xie T, Utleg AG, Yan X, Yi EC, Shannon P, Khrebtukova I, Lange PH, Goodlett DR, Zhou D, Vasicek TJ, Hood L. Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease. Cancer Research. 65: 3081-91. PMID 15833837 DOI: 10.1158/0008-5472.Can-04-3218  0.539
2005 Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biology. 6: R9. PMID 15642101 DOI: 10.1186/Gb-2004-6-1-R9  0.369
2004 Bunimovich YL, Ge G, Beverly KC, Ries RS, Hood L, Heath JR. Electrochemically programmed, spatially selective biofunctionalization of silicon wires. Langmuir : the Acs Journal of Surfaces and Colloids. 20: 10630-8. PMID 15544395 DOI: 10.1021/La047913H  0.357
2004 Glusman G, Kaur A, Hood L, Rowen L. An enigmatic fourth runt domain gene in the fugu genome: ancestral gene loss versus accelerated evolution. Bmc Evolutionary Biology. 4: 43. PMID 15527507 DOI: 10.1186/1471-2148-4-43  0.307
2004 Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Research. 14: 2221-34. PMID 15520287 DOI: 10.1101/Gr.2700304  0.743
2004 Hood L, Heath JR, Phelps ME, Lin B. Systems biology and new technologies enable predictive and preventative medicine. Science (New York, N.Y.). 306: 640-3. PMID 15499008 DOI: 10.1126/Science.1104635  0.439
2004 Tian Q, Feetham MC, Tao WA, He XC, Li L, Aebersold R, Hood L. Proteomic analysis identifies that 14-3-3zeta interacts with beta-catenin and facilitates its activation by Akt. Proceedings of the National Academy of Sciences of the United States of America. 101: 15370-5. PMID 15492215 DOI: 10.1073/Pnas.0406499101  0.558
2004 Weston AD, Baliga NS, Bonneau R, Hood L. Systems approaches applied to the study of Saccharomyces cerevisiae and Halobacterium sp. Cold Spring Harbor Symposia On Quantitative Biology. 68: 345-57. PMID 15338636 DOI: 10.1101/Sqb.2003.68.345  0.534
2004 Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L. Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1. Genome Biology. 5: R52. PMID 15287974 DOI: 10.1186/Gb-2004-5-8-R52  0.583
2004 Tian Q, Stepaniants SB, Mao M, Weng L, Feetham MC, Doyle MJ, Yi EC, Dai H, Thorsson V, Eng J, Goodlett D, Berger JP, Gunter B, Linseley PS, Stoughton RB, ... ... Hood LE, et al. Integrated genomic and proteomic analyses of gene expression in Mammalian cells. Molecular & Cellular Proteomics : McP. 3: 960-9. PMID 15238602 DOI: 10.1074/Mcp.M400055-Mcp200  0.367
2004 Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Research. 14: 1025-35. PMID 15140832 DOI: 10.1101/Gr.1993504  0.591
2004 Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L. Low-pass sequencing for microbial comparative genomics. Bmc Genomics. 5: 3. PMID 14718067 DOI: 10.1186/1471-2164-5-3  0.565
2004 Facciotti MT, Bonneau R, Hood L, Baliga NS. Systems biology experimental design - Considerations for building predictive gene regulatory network models for prokaryotic systems Current Genomics. 5: 527-544. DOI: 10.2174/1389202043348850  0.723
2003 Xie T, Rowen L, Aguado B, Ahearn ME, Madan A, Qin S, Campbell RD, Hood L. Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. Genome Research. 13: 2621-36. PMID 14656967 DOI: 10.1101/Gr.1736803  0.33
2003 Heath JR, Phelps ME, Hood L. NanoSystems biology. Molecular Imaging and Biology : Mib : the Official Publication of the Academy of Molecular Imaging. 5: 312-25. PMID 14630511 DOI: 10.1016/j.mibio.2003.10.001  0.464
2003 Lin B, White JT, Utleg AG, Wang S, Ferguson C, True LD, Vessella R, Hood L, Nelson PS. Isolation and characterization of human and mouse WDR19,a novel WD-repeat protein exhibiting androgen-regulated expression in prostate epithelium. Genomics. 82: 331-42. PMID 12906858 DOI: 10.1016/S0888-7543(03)00151-4  0.308
2003 Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Molecular & Cellular Proteomics : McP. 2: 506-24. PMID 12872007 DOI: 10.1074/Mcp.M300044-Mcp200  0.741
2003 Kolker E, Purvine S, Galperin MY, Stolyar S, Goodlett DR, Nesvizhskii AI, Keller A, Xie T, Eng JK, Yi E, Hood L, Picone AF, Cherny T, Tjaden BC, Siegel AF, et al. Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. Journal of Bacteriology. 185: 4593-602. PMID 12867470 DOI: 10.1128/Jb.185.15.4593-4602.2003  0.519
2003 Utleg AG, Yi EC, Xie T, Shannon P, White JT, Goodlett DR, Hood L, Lin B. Proteomic analysis of human prostasomes. The Prostate. 56: 150-61. PMID 12746840 DOI: 10.1002/Pros.10255  0.469
2003 Davidson EH, McClay DR, Hood L. Regulatory gene networks and the properties of the developmental process. Proceedings of the National Academy of Sciences of the United States of America. 100: 1475-80. PMID 12578984 DOI: 10.1073/Pnas.0437746100  0.307
2003 Hood L, Galas D. The digital code of DNA Nature. 421: 444-448. PMID 12540920 DOI: 10.1038/Nature01410  0.302
2002 Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences of the United States of America. 99: 14913-8. PMID 12403819 DOI: 10.1073/Pnas.192558999  0.69
2002 Nelson PS, Clegg N, Arnold H, Ferguson C, Bonham M, White J, Hood L, Lin B. The program of androgen-responsive genes in neoplastic prostate epithelium. Proceedings of the National Academy of Sciences of the United States of America. 99: 11890-5. PMID 12185249 DOI: 10.1073/Pnas.182376299  0.317
2002 Gjertsen BT, Øyan AM, Marzolf B, Hovland R, Gausdal G, Døskeland SO, Dimitrov K, Golden A, Kalland KH, Hood L, Bruserud Ø. Analysis of acute myelogenous leukemia: preparation of samples for genomic and proteomic analyses. Journal of Hematotherapy & Stem Cell Research. 11: 469-81. PMID 12183832 DOI: 10.1089/15258160260090933  0.302
2002 Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, Hood L, Aebersold R. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Molecular & Cellular Proteomics : McP. 1: 323-33. PMID 12096114 DOI: 10.1074/Mcp.M200001-Mcp200  0.606
2002 Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, ... ... Hood L, et al. A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Developmental Biology. 246: 162-90. PMID 12027441 DOI: 10.1006/Dbio.2002.0635  0.329
2002 Rowen L, Young J, Birditt B, Kaur A, Madan A, Philipps DL, Qin S, Minx P, Wilson RK, Hood L, Graveley BR. Analysis of the human neurexin genes: alternative splicing and the generation of protein diversity. Genomics. 79: 587-97. PMID 11944992 DOI: 10.1006/Geno.2002.6734  0.357
2002 Park IK, He Y, Lin F, Laerum OD, Tian Q, Bumgarner R, Klug CA, Li K, Kuhr C, Doyle MJ, Xie T, Schummer M, Sun Y, Goldsmith A, Clarke MF, ... ... Hood L, et al. Differential gene expression profiling of adult murine hematopoietic stem cells. Blood. 99: 488-98. PMID 11781229 DOI: 10.1182/Blood.V99.2.488  0.334
2002 Lane RP, Roach JC, Lee IY, Boysen C, Smit A, Trask BJ, Hood L. Genomic analysis of the olfactory receptor region of the mouse and human T-cell receptor alpha/delta loci. Genome Research. 12: 81-7. PMID 11779833 DOI: 10.1101/Gr.197901  0.325
2002 Lane RP, Cutforth T, Axel R, Hood L, Trask BJ. Sequence analysis of mouse vomeronasal receptor gene clusters reveals common promoter motifs and a history of recent expansion. Proceedings of the National Academy of Sciences of the United States of America. 99: 291-6. PMID 11752409 DOI: 10.1073/Pnas.012608399  0.317
2001 Dassarma S, Kennedy SP, Berquist B, Victor Ng W, Baliga NS, Spudich JL, Krebs MP, Eisen JA, Johnson CH, Hood L. Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon. Photosynthesis Research. 70: 3-17. PMID 16228359 DOI: 10.1023/A:1013879706863  0.571
2001 Ideker T, Galitski T, Hood L. A new approach to decoding life: systems biology. Annual Review of Genomics and Human Genetics. 2: 343-72. PMID 11701654 DOI: 10.1146/Annurev.Genom.2.1.343  0.505
2001 Kennedy SP, Ng WV, Salzberg SL, Hood L, DasSarma S. Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. Genome Research. 11: 1641-50. PMID 11591641 DOI: 10.1101/Gr.190201  0.326
2001 Lane RP, Cutforth T, Young J, Athanasiou M, Friedman C, Rowen L, Evans G, Axel R, Hood L, Trask BJ. Genomic analysis of orthologous mouse and human olfactory receptor loci. Proceedings of the National Academy of Sciences of the United States of America. 98: 7390-5. PMID 11416212 DOI: 10.1073/Pnas.131215398  0.331
2001 Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, Hood L. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science (New York, N.Y.). 292: 929-34. PMID 11340206 DOI: 10.1126/Science.292.5518.929  0.648
2001 Baliga NS, Kennedy SP, Ng WV, Hood L, DasSarma S. Genomic and genetic dissection of an archaeal regulon. Proceedings of the National Academy of Sciences of the United States of America. 98: 2521-5. PMID 11226271 DOI: 10.1073/Pnas.051632498  0.588
2000 Ideker T, Thorsson V, Siegel AF, Hood LE. Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 805-17. PMID 11382363 DOI: 10.1089/10665270050514945  0.458
2000 Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, ... ... Hood L, et al. Genome sequence of Halobacterium species NRC-1. Proceedings of the National Academy of Sciences of the United States of America. 97: 12176-81. PMID 11016950 DOI: 10.1073/Pnas.190337797  0.597
2000 Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L. A sea urchin genome project: sequence scan, virtual map, and additional resources. Proceedings of the National Academy of Sciences of the United States of America. 97: 9514-8. PMID 10920195 DOI: 10.1073/Pnas.160261897  0.319
2000 Nelson PS, Han D, Rochon Y, Corthals GL, Lin B, Monson A, Nguyen V, Franza BR, Plymate SR, Aebersold R, Hood L. Comprehensive analyses of prostate gene expression: convergence of expressed sequence tag databases, transcript profiling and proteomics. Electrophoresis. 21: 1823-31. PMID 10870968 DOI: 10.1002/(Sici)1522-2683(20000501)21:9<1823::Aid-Elps1823>3.0.Co;2-3  0.458
2000 Baliga NS, Goo YA, Ng WV, Hood L, Daniels CJ, DasSarma S. Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors? Molecular Microbiology. 36: 1184-5. PMID 10844702 DOI: 10.1046/J.1365-2958.2000.01916.X  0.566
2000 Deng Y, Madan A, Banta AB, Friedman C, Trask BJ, Hood L, Li L. Characterization, chromosomal localization, and the complete 30-kb DNA sequence of the human Jagged2 (JAG2) gene. Genomics. 63: 133-8. PMID 10662552 DOI: 10.1006/Geno.1999.6045  0.706
1999 Nelson PS, Hawkins V, Schummer M, Bumgarner R, Ng WL, Ideker T, Ferguson C, Hood L. Negative selection: a method for obtaining low-abundance cDNAs using high-density cDNA clone arrays. Genetic Analysis : Biomolecular Engineering. 15: 209-15. PMID 10609756 DOI: 10.1016/S1050-3862(99)00006-6  0.532
1999 Beck S, Geraghty D, Inoko H, Rowen L, Aguado B, Bahram S, Campbell R, Forbes S, Guillaudeux T, Hood L, Horton R, Janer M, Jasoni C, Madan A, Milne S, et al. Complete sequence and gene map of a human major histocompatibility complex Nature. 401: 921-923. PMID 10553908 DOI: 10.1038/44853  0.335
1999 Mahairas GG, Wallace JC, Smith K, Swartzell S, Holzman T, Keller A, Shaker R, Furlong J, Young J, Zhao S, Adams MD, Hood L. Sequence-tagged connectors: A sequence approach to mapping and scanning the human genome Proceedings of the National Academy of Sciences of the United States of America. 96: 9739-9744. PMID 10449764 DOI: 10.1073/Pnas.96.17.9739  0.309
1999 Wang K, Gan L, Jeffery E, Gayle M, Gown AM, Skelly M, Nelson PS, Ng WV, Schummer M, Hood L, Mulligan J. Monitoring gene expression profile changes in ovarian carcinomas using cDNA microarray. Gene. 229: 101-8. PMID 10095109 DOI: 10.1016/S0378-1119(99)00035-9  0.311
1998 Ng WV, Ciufo SA, Smith TM, Bumgarner RE, Baskin D, Faust J, Hall B, Loretz C, Seto J, Slagel J, Hood L, DasSarma S. Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome? Genome Research. 8: 1131-41. PMID 9847077 DOI: 10.1101/Gr.8.11.1131  0.324
1998 Li L, Huang GM, Banta AB, Deng Y, Smith T, Dong P, Friedman C, Chen L, Trask BJ, Spies T, Rowen L, Hood L. Cloning, characterization, and the complete 56.8-kilobase DNA sequence of the human NOTCH4 gene. Genomics. 51: 45-58. PMID 9693032 DOI: 10.1006/Geno.1998.5330  0.709
1998 Li L, Milner LA, Deng Y, Iwata M, Banta A, Graf L, Marcovina S, Friedman C, Trask BJ, Hood L, Torok-Storb B. The human homolog of rat Jagged1 expressed by marrow stroma inhibits differentiation of 32D cells through interaction with Notch1. Immunity. 8: 43-55. PMID 9462510 DOI: 10.1016/S1074-7613(00)80457-4  0.685
1997 Wang K, Gan L, Kuo C, Hood L. A highly conserved apoptotic suppressor gene is located near the chicken T-cell receptor alpha chain constant region. Immunogenetics. 46: 376-382. PMID 9271627 DOI: 10.1007/S002510050291  0.311
1997 Funkhouser W, Koop BF, Charmley P, Martindale D, Slightom J, Hood L. Evolution and selection of primate T cell antigen receptor BV8 gene subfamily. Molecular Phylogenetics and Evolution. 8: 51-64. PMID 9242595 DOI: 10.1006/Mpev.1997.0406  0.321
1996 Boysen C, Carlson C, Hood E, Hood L, Nickerson DA. Identifying DNA polymorphisms in human TCRA/D variable genes by direct sequencing of PCR products. Immunogenetics. 44: 121-7. PMID 8662074 DOI: 10.1007/Bf02660060  0.314
1996 Rowen L, Koop BF, Hood L. The Complete 685-Kilobase DNA Sequence of the Human β T Cell Receptor Locus Science. 272: 1755-1762. PMID 8650574 DOI: 10.1126/Science.272.5269.1755  0.31
1995 Charmley P, Concannon P, Hood L, Rowen L. Frequency and Polymorphism of Simple Sequence Repeats in a Contiguous 685-kb DNA Sequence Containing the Human T-Cell Receptor β-Chain Gene Complex Genomics. 29: 760-765. PMID 8575771 DOI: 10.1006/Geno.1995.9940  0.542
1995 Wang K, Gan L, Lee I, Hood L. Isolation and characterization of the chicken trypsinogen gene family. Biochemical Journal. 307: 471-479. PMID 7733885 DOI: 10.1042/Bj3070471  0.303
1994 Charmley P, Nickerson D, Hood L. Polymorphism detection and sequence analysis of human T-cell receptor V alpha-chain-encoding gene segments. Immunogenetics. 39: 138-45. PMID 8276457 DOI: 10.1007/Bf00188617  0.304
1994 Koop BF, Hood L. Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA Nature Genetics. 7: 48-53. PMID 8075639 DOI: 10.1038/Ng0594-48  0.309
1994 Orr SL, Hughes TP, Sawyers CL, Kato RM, Quan SG, Williams SP, Witte ON, Hood L. Isolation of unknown genes from human bone marrow by differential screening and single-pass cDNA sequence determination. Proceedings of the National Academy of Sciences of the United States of America. 91: 11869-73. PMID 7991548 DOI: 10.1073/Pnas.91.25.11869  0.311
1992 Funkhouser SW, Concannon P, Charmley P, Vredevoe DL, Hood L. Differences in T cell receptor restriction fragment length polymorphisms in patients with rheumatoid arthritis Arthritis and Rheumatism. 35: 465-471. PMID 1348938 DOI: 10.1002/Art.1780350417  0.504
1990 Fors L, Saavedra RA, Hood L. Cloning of the shark Po promoter using a genomic walking technique based on the polymerase chain reaction Nucleic Acids Research. 18: 2793-2799. PMID 2339064 DOI: 10.1093/Nar/18.9.2793  0.302
1989 Saavedra RA, Fors L, Aebersold RH, Arden B, Horvath S, Sanders J, Hood L. The myelin proteins of the shark brain are similar to the myelin proteins of the mammalian peripheral nervous system. Journal of Molecular Evolution. 29: 149-56. PMID 2478717 DOI: 10.1007/Bf02100113  0.414
1987 Smith LM, Kaiser RJ, Sanders JZ, Hood LE. The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis. Methods in Enzymology. 155: 260-301. PMID 3431463 DOI: 10.1016/0076-6879(87)55021-2  0.372
1987 Hood LE, Hunkapiller MW, Smith LM. Automated DNA sequencing and analysis of the human genome. Genomics. 1: 201-12. PMID 3328736 DOI: 10.1016/0888-7543(87)90046-2  0.42
1986 Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SB, Hood LE. Fluorescence detection in automated DNA sequence analysis. Nature. 321: 674-9. PMID 3713851 DOI: 10.1038/321674A0  0.38
1986 Klein MH, Concannon P, Everett M, Kim LDH, Hunkapiller T, Hood L. Diversity and structure of human T-cell receptor alpha-chain variable region genes Proceedings of the National Academy of Sciences of the United States of America. 83: 6598-6602. PMID 3502713 DOI: 10.1073/Pnas.84.19.6884  0.509
1986 Concannon P, Lai E, Klein M, Siu S, Strauss E, Pickering L, Kung P, Gatti R, Hood L. Human T-cell receptor genes: organization, diversity, and polymorphism. Cold Spring Harbor Symposia On Quantitative Biology. 51: 785-795. PMID 3472761 DOI: 10.1101/Sqb.1986.051.01.091  0.529
1986 Robins DM, Malissen M, Hood L, Ferreira A, Walthall D, Mitchell M. Multiple C4/Slp genes distinguished by expression after transfection. Molecular and Cellular Biology. 6: 134-141. PMID 3023818 DOI: 10.1128/Mcb.6.1.134  0.308
1985 Smith LM, Fung S, Hunkapiller MW, Hunkapiller TJ, Hood LE. The synthesis of oligonucleotides containing an aliphatic amino group at the 5' terminus: synthesis of fluorescent DNA primers for use in DNA sequence analysis. Nucleic Acids Research. 13: 2399-412. PMID 4000959 DOI: 10.1093/Nar/13.7.2399  0.383
1984 Steinmetz M, Malissen M, Hood L, Orn A, Maki RA, Dastoornikoo GR, Stephan D, Gibb E, Romaniuk R. Tracts of high or low sequence divergence in the mouse major histocompatibility complex. The Embo Journal. 3: 2995-3003. DOI: 10.1002/J.1460-2075.1984.Tb02246.X  0.302
1983 Hunkapiller MW, Hewick RM, Dreyer WJ, Hood LE. High-sensitivity sequencing with a gas-phase sequenator. Methods in Enzymology. 91: 399-413. PMID 6855591 DOI: 10.1016/S0076-6879(83)91038-8  0.45
1983 Walker LE, Hewick R, Hunkapiller MW, Hood LE, Dreyer WJ, Reisfeld RA. N-terminal amino acid sequences of the alpha and beta chains of HLA-DR1 and HLA-DR2 antigens. Biochemistry. 22: 185-8. PMID 6600932 DOI: 10.1021/Bi00270A027  0.465
1983 Malissen M, Hunkapiller T, Hood L. Nucleotide sequence of a light chain gene of the mouse I-A subregion: A beta d. Science. 221: 750-754. PMID 6410508 DOI: 10.1126/Science.6410508  0.311
1983 Steinmetz M, Hood L. Genes of the major histocompatibility complex in mouse and man Science. 222: 727-733. PMID 6356354 DOI: 10.1126/Science.6356354  0.305
1982 Moore KW, Sher BT, Sun YH, Eakle KA, Hood L. DNA sequence of a gene encoding a BALB/c mouse Ld transplantation antigen. Science (New York, N.Y.). 215: 679-82. PMID 7058332 DOI: 10.1126/Science.7058332  0.301
1982 Alexander A, Steinmetz M, Barritault D, Frangione B, Franklin EC, Hood L, Buxbaum JN. gamma Heavy chain disease in man: cDNA sequence supports partial gene deletion model. Proceedings of the National Academy of Sciences of the United States of America. 79: 3260-4. PMID 6808505 DOI: 10.1073/Pnas.79.10.3260  0.306
1981 Hood L, Hunkapiller M, Hewick R, Giffin CE, Dreyer WJ. Microchemical instrumentation. Journal of Supramolecular Structure and Cellular Biochemistry. 17: 27-36. PMID 7321052 DOI: 10.1002/jsscb.380170104  0.486
1981 Hewick RM, Hunkapiller MW, Hood LE, Dreyer WJ. A gas-liquid solid phase peptide and protein sequenator. The Journal of Biological Chemistry. 256: 7990-7. PMID 7263636  0.479
1979 Elgin SC, Schilling J, Hood LE. Sequence of histone 2B of Drosophila melanogaster. Biochemistry. 18: 5679-85. PMID 117830 DOI: 10.1021/Bi00592A025  0.487
1977 Hood L, Huang HV, Dreyer WJ. The area-code hypothesis: the immune system provides clues to understanding the genetic and molecular basis of cell recognition during development. Journal of Supramolecular Structure. 7: 531-59. PMID 616492 DOI: 10.1002/Jss.400070321  0.501
1975 Wu FC, Elgin SC, Hood LE. The nonhistone chromosomal proteins of vertebrate liver and kidney: a comparative study by gel electrophoresis. Journal of Molecular Evolution. 5: 87-101. PMID 1080519 DOI: 10.1007/BF01732514  0.482
1975 Hood L, Campbell JH, Elgin SC. The organization, expression, and evolution of antibody genes and other multigene families. Annual Review of Genetics. 9: 305-53. PMID 813561 DOI: 10.1146/annurev.ge.09.120175.001513  0.481
1974 Elgin SC, Boyd JB, Hood LE, Wray W, Wu FC. A prologue to the study of the nonhistone chromosomal proteins. Cold Spring Harbor Symposia On Quantitative Biology. 38: 821-33. PMID 4524790 DOI: 10.1101/Sqb.1974.038.01.085  0.461
1974 Stumph WE, Elgin SC, Hood L. Antibodies to proteins dissolved in sodium dodecyl sulfate. Journal of Immunology (Baltimore, Md. : 1950). 113: 1752-6. PMID 4214863  0.455
1973 Wu FC, Elgin SC, Hood LE. Nonhistone chromosomal proteins of rat tissues. A comparative study by gel electrophoresis. Biochemistry. 12: 2792-7. PMID 4719117 DOI: 10.1021/Bi00739A003  0.458
1973 Elgin SC, Hood LE. Chromosomal proteins of Drosophila embryos. Biochemistry. 12: 4984-91. PMID 4202644 DOI: 10.1021/Bi00748A026  0.46
1967 Gray WR, Dreyer WJ, Hood L. Mechanism of Antibody Synthesis: Size Differences between Mouse Kappa Chains. Science (New York, N.Y.). 156: 369. PMID 17812379 DOI: 10.1126/science.156.3773.369-b  0.449
1967 Gray WR, Dreyer WJ, Hood L. Mechanism of antibody synthesis: size differences between mouse kappa chains. Science (New York, N.Y.). 155: 465-7. PMID 4162931  0.472
1967 Dreyer WJ, Gray WR, Hood L. The Genetic, Molecular, and Cellular Basis of Antibody Formation: Some Facts and a Unifying Hypothesis Cold Spring Harbor Symposia On Quantitative Biology. 32: 353-367. DOI: 10.1101/Sqb.1967.032.01.048  0.516
1967 Crick FHC, Hood L, Smithies O, Dreyer WJ, Milstein C, Papermaster BW, Mitchison NA, Cebra JJ, Talmage DW, Baglioni C, Edelman GM, Jerne NK. General Discussion on Theories of Antibody Variability Cold Spring Harbor Symposia On Quantitative Biology. 32: 169-172. DOI: 10.1101/Sqb.1967.032.01.024  0.491
1967 Hood L, Gray WR, Sanders BG, Dreyer WJ. Light Chain Evolution Cold Spring Harbor Symposia On Quantitative Biology. 32: 133-146. DOI: 10.1101/Sqb.1967.032.01.021  0.491
1966 Hood LE, Gray WR, Dreyer WJ. On the mechanism of antibody synthesis: a species comparison of L-chains. Proceedings of the National Academy of Sciences of the United States of America. 55: 826-32. PMID 5219690 DOI: 10.1073/Pnas.55.4.826  0.438
1965 BENNETT JC, HOOD LE, DREYER WJ, POTTER M. EVIDENCE FOR AMINO ACID SEQUENCE DIFFERENCES AMONG PROTEINS RESEMBLING THE L-CHAIN SUBUNITS OF IMMUNOGLOBULINS. Journal of Molecular Biology. 12: 81-7. PMID 14343299 DOI: 10.1016/S0022-2836(65)80284-4  0.491
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