| Year |
Citation |
Score |
| 2024 |
Karimi N, Krieg CP, Spalink D, Lemmon AR, Lemmon EM, Eifler E, Hernández AI, Chan PW, Rodríguez A, Landis JB, Strickler SR, Specht CD, Givnish TJ. Chromosomal evolution, environmental heterogeneity, and migration drive spatial patterns of species richness in (Liliaceae). Proceedings of the National Academy of Sciences of the United States of America. 121: e2305228121. PMID 38394215 DOI: 10.1073/pnas.2305228121 |
0.344 |
|
| 2023 |
Cruaud A, Rasplus JY, Zhang J, Burks R, Delvare G, Fusu L, Gumovsky A, Huber JT, Janšta P, Mitroiu MD, Noyes JS, van Noort S, Baker A, Böhmová J, Baur H, ... ... Lemmon AR, et al. The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps. Cladistics : the International Journal of the Willi Hennig Society. PMID 37919831 DOI: 10.1111/cla.12561 |
0.359 |
|
| 2023 |
Booker WW, Lemmon EM, Lemmon AR, Ptacek MB, Hassinger ATB, Schul J, Gerhardt HC. Biogeography and the evolution of acoustic communication in the polyploid North American grey treefrog complex. Molecular Ecology. PMID 37401503 DOI: 10.1111/mec.17061 |
0.305 |
|
| 2023 |
Semple JC, McMinn-Sauder H, Stover M, Lemmon AR, Lemmon EM, Beck JB. Goldenrod herbariomics: Hybrid-sequence capture reveals the phylogeny of Solidago. American Journal of Botany. PMID 37014095 DOI: 10.1002/ajb2.16164 |
0.328 |
|
| 2023 |
Mossop KD, Lemmon AR, Moriarty Lemmon E, Eytan R, Adams M, Unmack PJ, Smith Date K, Morales HE, Hammer MP, Wong BBM, Chapple DG. Phylogenomics and biogeography of arid-adapted Chlamydogobius goby fishes. Molecular Phylogenetics and Evolution. 107757. PMID 36925090 DOI: 10.1016/j.ympev.2023.107757 |
0.339 |
|
| 2023 |
Benítez-Villaseñor A, Granados Mendoza C, Wanke S, Peñafiel Cevallos M, Freire ME, Lemmon EM, Lemmon AR, Magallón S. The use of Anchored Hybrid Enrichment data to resolve higher-level phylogenetic relationships: A proof-of-concept applied to Asterales (Eudicotyledoneae; Angiosperms). Molecular Phylogenetics and Evolution. 181: 107714. PMID 36708940 DOI: 10.1016/j.ympev.2023.107714 |
0.389 |
|
| 2022 |
Owen CL, Marshall DC, Wade EJ, Meister R, Goemans G, Kunte K, Moulds M, Hill K, Villet M, Pham TH, Kortyna M, Lemmon EM, Lemmon AR, Simon C. Detecting and removing sample contamination in phylogenomic data: an example and its implications for Cicadidae phylogeny (Insecta: Hemiptera). Systematic Biology. PMID 35708660 DOI: 10.1093/sysbio/syac043 |
0.372 |
|
| 2022 |
Hernández-Gutiérrez R, van den Berg C, Granados Mendoza C, Peñafiel Cevallos M, Freire M E, Lemmon EM, Lemmon AR, Magallón S. Localized Phylogenetic Discordance Among Nuclear Loci Due to Incomplete Lineage Sorting and Introgression in the Family of Cotton and Cacao (Malvaceae). Frontiers in Plant Science. 13: 850521. PMID 35498660 DOI: 10.3389/fpls.2022.850521 |
0.387 |
|
| 2022 |
Piller KR, Parker E, Lemmon AR, Moriarty Lemmon E. Investigating the utility of Anchored Hybrid Enrichment data to investigate the relationships among the Killifishes (Actinopterygii: Cyprinodontiformes), a globally distributed group of fishes. Molecular Phylogenetics and Evolution. 107482. PMID 35452841 DOI: 10.1016/j.ympev.2022.107482 |
0.318 |
|
| 2022 |
Pyron RA, O'Connell KA, Lemmon EM, Lemmon AR, Beamer DA. Candidate-species delimitation in salamanders reveals gene flow across lineage boundaries, confounding phylogenetic estimation and clarifying hybrid zones. Ecology and Evolution. 12: e8574. PMID 35222955 DOI: 10.1002/ece3.8574 |
0.398 |
|
| 2021 |
Rose JP, Kriebel R, Kahan L, DiNicola A, González-Gallegos JG, Celep F, Lemmon EM, Lemmon AR, Sytsma KJ, Drew BT. Sage Insights Into the Phylogeny of : Dealing With Sources of Discordance Within and Across Genomes. Frontiers in Plant Science. 12: 767478. PMID 34899789 DOI: 10.3389/fpls.2021.767478 |
0.405 |
|
| 2021 |
Booker WW, Gerhardt HC, Lemmon AR, Ptacek MB, Hassinger ATB, Schul J, Lemmon EM. The complex history of genome duplication and hybridization in North American gray treefrogs. Molecular Biology and Evolution. PMID 34791374 DOI: 10.1093/molbev/msab316 |
0.31 |
|
| 2021 |
Sabbag AF, Tereza C Thomé M, Lyra ML, Brasileiro CA, Moriarty Lemmon E, Lemmon A, F B Haddad C. Sympatric and independently evolving lineages in the Thoropa miliaris - T. taophora species complex (Anura: Cycloramphidae). Molecular Phylogenetics and Evolution. 107220. PMID 34481948 DOI: 10.1016/j.ympev.2021.107220 |
0.306 |
|
| 2021 |
Nicolas V, Mikula O, Lavrenchenko LA, Šumbera R, Bartáková V, Bryjová A, Meheretu Y, Verheyen E, Didier Missoup A, Lemmon AR, Moriarty Lemmon E, Bryja J. Phylogenomics of African radiation of Praomyini (Muridae: aMurinae) rodents: first fully resolved phylogeny, evolutionary history and delimitation of extant genera. Molecular Phylogenetics and Evolution. 107263. PMID 34273505 DOI: 10.1016/j.ympev.2021.107263 |
0.39 |
|
| 2021 |
Dolinay M, Nečas T, Zimkus BM, Schmitz A, Fokam EB, Moriarty Lemmon E, Lemmon AR, Gvoždík V. Gene flow in phylogenomics: Sequence capture resolves species limits and biogeography of Afromontane forest endemic frogs from the Cameroon Highlands. Molecular Phylogenetics and Evolution. 107258. PMID 34252546 DOI: 10.1016/j.ympev.2021.107258 |
0.361 |
|
| 2021 |
Nydam ML, Lemmon AR, Cherry JR, Kortyna ML, Clancy DL, Hernandez C, Cohen CS. Phylogenomic and morphological relationships among the botryllid ascidians (Subphylum Tunicata, Class Ascidiacea, Family Styelidae). Scientific Reports. 11: 8351. PMID 33863944 DOI: 10.1038/s41598-021-87255-2 |
0.312 |
|
| 2021 |
Reis Percequillo A, Rodrigues do Prado J, Fiedler Abreu E, Dalapicolla J, Carolina Pavan A, de Almeida Chiquito E, Brennand P, Steppan SJ, Lemmon AR, Moriarty Lemmon E, Wilkinson M. Tempo and mode of evolution of Oryzomyine rodents (Rodentia, Cricetidae, Sigmodontinae): A phylogenomic approach. Molecular Phylogenetics and Evolution. 107120. PMID 33610650 DOI: 10.1016/j.ympev.2021.107120 |
0.399 |
|
| 2021 |
Bybee SM, Kalkman VJ, Erickson RJ, Frandsen PB, Breinholt JW, Suvorov A, Dijkstra KB, Cordero-Rivera A, Skevington JH, Abbott JC, Sanchez Herrera M, Lemmon AR, Moriarty Lemmon E, Ware JL. Phylogeny and classification of Odonata using targeted genomics. Molecular Phylogenetics and Evolution. 107115. PMID 33609713 DOI: 10.1016/j.ympev.2021.107115 |
0.399 |
|
| 2021 |
Hurt C, Hultgren K, Anker A, Lemmon AR, Moriarty Lemmon E, Bracken-Grissom H. First worldwide molecular phylogeny of the morphologically and ecologically hyperdiversified snapping shrimp genus Alpheus (Malacostraca: Decapoda). Molecular Phylogenetics and Evolution. 158: 107080. PMID 33482381 DOI: 10.1016/j.ympev.2021.107080 |
0.397 |
|
| 2021 |
Mikula O, Nicolas V, Šumbera R, Konečný A, Denys C, Verheyen E, Bryjová A, Lemmon AR, Moriarty Lemmon E, Bryja J. Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini). Molecular Phylogenetics and Evolution. 107069. PMID 33421615 DOI: 10.1016/j.ympev.2021.107069 |
0.313 |
|
| 2020 |
Sharanowski BJ, Ridenbaugh RD, Piekarski PK, Broad GR, Burke GR, Deans AR, Lemmon AR, Moriarty Lemmon EC, Diehl GJ, Whitfield JB, Hines HM. Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization. Molecular Phylogenetics and Evolution. 107023. PMID 33253830 DOI: 10.1016/j.ympev.2020.107023 |
0.331 |
|
| 2020 |
Cai L, Xi Z, Lemmon EM, Lemmon AR, Mast A, Buddenhagen CE, Liu L, Davis CC. The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales. Systematic Biology. PMID 33169797 DOI: 10.1093/sysbio/syaa083 |
0.326 |
|
| 2020 |
Natusch DJD, Esquerré D, Lyons JA, Hamidy A, Lemmon AR, Lemmon EM, Riyanto A, Keogh JS, Donnellan S. Phylogenomics, biogeography and taxonomic revision of New Guinean pythons (Pythonidae, Leiopython) harvested for international trade. Molecular Phylogenetics and Evolution. 106960. PMID 32950680 DOI: 10.1016/J.Ympev.2020.106960 |
0.391 |
|
| 2020 |
Rose JP, Toledo CAP, Lemmon EM, Lemmon AR, Sytsma KJ. Out of Sight, Out of Mind: Widespread Nuclear and Plastid-Nuclear Discordance in the Flowering Plant Genus Polemonium (Polemoniaceae) Suggests Widespread Historical Gene Flow Despite Limited Nuclear Signal. Systematic Biology. PMID 32617587 DOI: 10.1093/Sysbio/Syaa049 |
0.464 |
|
| 2020 |
Ochoa A, Broe M, Lemmon EM, Lemmon AR, Rokyta DR, Gibbs HL. Drift, selection, and adaptive variation in small populations of a threatened rattlesnake. Molecular Ecology. PMID 32557885 DOI: 10.1111/Mec.15517 |
0.349 |
|
| 2020 |
Brennan IG, Lemmon AR, Lemmon EM, Portik DM, Weijola V, Welton L, Donnellan SC, Keogh JS. Phylogenomics of monitor lizards and the role of competition in dictating body size disparity. Systematic Biology. PMID 32521014 DOI: 10.1093/Sysbio/Syaa046 |
0.439 |
|
| 2020 |
Novikova PY, Brennan IG, Booker W, Mahony M, Doughty P, Lemmon AR, Moriarty Lemmon E, Roberts JD, Yant L, Van de Peer Y, Keogh JS, Donnellan SC. Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus. Plos Genetics. 16: e1008769. PMID 32392206 DOI: 10.1371/Journal.Pgen.1008769 |
0.478 |
|
| 2020 |
Hime PM, Lemmon AR, Lemmon ECM, Prendini E, Brown JM, Thomson RC, Kratovil JD, Noonan BP, Pyron RA, Peloso PLV, Kortyna ML, Keogh JS, Donnellan SC, Mueller RL, Raxworthy CJ, et al. Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life. Systematic Biology. PMID 32359157 DOI: 10.1093/Sysbio/Syaa034 |
0.695 |
|
| 2020 |
Esquerré D, Donnellan S, Brennan IG, Lemmon AR, Lemmon EM, Zaher H, Grazziotin FG, Keogh JS. Phylogenomics, biogeography and morphometrics reveal rapid phenotypic evolution in pythons after crossing Wallace's line. Systematic Biology. PMID 32208482 DOI: 10.1093/Sysbio/Syaa024 |
0.377 |
|
| 2020 |
Wu YH, Yan F, Stuart BL, Prendini E, Suwannapoom C, Dahn HA, Zhang BL, Cai HX, Xu YB, Jiang K, Chen HM, Lemmon AR, Moriarty Lemmon E, Raxworthy CJ, Orlov NL, et al. A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the torrent frogs, genus Amolops (Anura: Ranidae). Molecular Phylogenetics and Evolution. 106789. PMID 32173414 DOI: 10.1016/J.Ympev.2020.106789 |
0.446 |
|
| 2020 |
Pyron RA, O'Connell KA, Lemmon EM, Lemmon AR, Beamer DA. Phylogenomic data reveal reticulation and incongruence among mitochondrial candidate species in Dusky Salamanders (Desmognathus). Molecular Phylogenetics and Evolution. 146: 106751. PMID 32028035 DOI: 10.1016/J.Ympev.2020.106751 |
0.482 |
|
| 2020 |
Garcia-R JC, Lemmon EM, Lemmon AR, French N. Phylogenomic Reconstruction Sheds Light on New Relationships and Timescale of Rails (Aves: Rallidae) Evolution Diversity. 12: 70. DOI: 10.3390/D12020070 |
0.5 |
|
| 2020 |
Dowdy NJ, Keating S, Lemmon AR, Lemmon EM, Conner WE, Chialvo CHS, Weller SJ, Simmons RB, Sisson MS, Zaspel JM. A deeper meaning for shallow‐level phylogenomic studies: nested anchored hybrid enrichment offers great promise for resolving the tiger moth tree of life (Lepidoptera: Erebidae: Arctiinae) Systematic Entomology. DOI: 10.1111/Syen.12433 |
0.32 |
|
| 2019 |
Granados Mendoza C, Jost M, Hágsater E, Magallón S, van den Berg C, Lemmon EM, Lemmon AR, Salazar GA, Wanke S. Target Nuclear and Off-Target Plastid Hybrid Enrichment Data Inform a Range of Evolutionary Depths in the Orchid Genus . Frontiers in Plant Science. 10: 1761. PMID 32063915 DOI: 10.3389/Fpls.2019.01761 |
0.423 |
|
| 2019 |
Banker SE, Lemmon AR, Hassinger AB, Dye M, Holland SD, Kortyna ML, Ospina O, Ralicki H, Lemmon EM. Hierarchical Hybrid Enrichment: Multi-tiered genomic data collection across evolutionary scales, with application to chorus frogs (Pseudacris). Systematic Biology. PMID 31886503 DOI: 10.1093/Sysbio/Syz074 |
0.433 |
|
| 2019 |
Phillips AJ, Dornburg A, Zapfe KL, Anderson FE, James SW, Erséus C, Moriarty Lemmon E, Lemmon AR, Williams BW. Editor's Note: Phylogenomic Analysis of a Putative Missing Link Sparks Reinterpretation of Leech Evolution. Genome Biology and Evolution. 11: 3275. PMID 31882994 DOI: 10.1093/Gbe/Evz247 |
0.301 |
|
| 2019 |
Chen JM, Prendini E, Wu YH, Zhang BL, Suwannapoom C, Chen HM, Jin JQ, Moriarty Lemmon E, Lemmon AR, Stuart BL, Raxworthy CJ, Murphy RW, Yuan ZY, Che J. An integrative phylogenomic approach illuminates the evolutionary history of Old World tree frogs (Anura: Rhacophoridae). Molecular Phylogenetics and Evolution. 106724. PMID 31881327 DOI: 10.1016/J.Ympev.2019.106724 |
0.436 |
|
| 2019 |
Natusch DJD, Esquerré D, Lyons JA, Hamidy A, Lemmon AR, Moriarty Lemmon E, Riyanto A, Scott Keogh J, Donnellan S. Species delimitation and systematics of the green pythons (Morelia viridis complex) of Melanesia and Australia. Molecular Phylogenetics and Evolution. 106640. PMID 31605811 DOI: 10.1016/J.Ympev.2019.106640 |
0.468 |
|
| 2019 |
Burbrink FT, Grazziotin FG, Pyron RA, Cundall D, Donnellan S, Irish F, Keogh JS, Kraus F, Murphy RW, Noonan B, Raxworthy CJ, Ruane S, Lemmon AR, Lemmon EM, Zaher H. Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships. Systematic Biology. PMID 31550008 DOI: 10.1093/Sysbio/Syz062 |
0.511 |
|
| 2019 |
Garcia-Porta J, Irisarri I, Kirchner M, Rodríguez A, Kirchhof S, Brown JL, MacLeod A, Turner AP, Ahmadzadeh F, Albaladejo G, Crnobrnja-Isailovic J, De la Riva I, Fawzi A, Galán P, Göçmen B, ... ... Lemmon A, et al. Environmental temperatures shape thermal physiology as well as diversification and genome-wide substitution rates in lizards. Nature Communications. 10: 4077. PMID 31501432 DOI: 10.1038/S41467-019-11943-X |
0.395 |
|
| 2019 |
Phillips AJ, Dornburg A, Zapfe KL, Anderson FE, James SW, Erséus C, Moriarty Lemmon E, Lemmon AR, Williams BW. Phylogenomic Analysis of a Putative Missing Link Sparks Reinterpretation of Leech Evolution. Genome Biology and Evolution. PMID 31214691 DOI: 10.1093/Gbe/Evz120 |
0.469 |
|
| 2019 |
Burbrink FT, Ruane S, Kuhn A, Rabibisoa N, Randriamahatantsoa B, Raselimanana AP, Andrianarimalala MSM, Cadle JE, Lemmon AR, Lemmon EM, Nussbaum RA, Jones LN, Pearson R, Raxworthy CJ. The Origins and Diversification of the Exceptionally Rich Gemsnakes (Colubroidea: Lamprophiidae: Pseudoxyrhophiinae) in Madagascar. Systematic Biology. PMID 31188455 DOI: 10.1093/Sysbio/Syz026 |
0.442 |
|
| 2019 |
Wolfe JM, Breinholt JW, Crandall KA, Lemmon AR, Lemmon EM, Timm LE, Siddall ME, Bracken-Grissom HD. A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans. Proceedings. Biological Sciences. 286: 20190079. PMID 31014217 DOI: 10.1098/Rspb.2019.0079 |
0.645 |
|
| 2019 |
Kriebel R, Drew BT, Drummond CP, González-Gallegos JG, Celep F, Mahdjoub MM, Rose JP, Xiang CL, Hu GX, Walker JB, Lemmon EM, Lemmon AR, Sytsma KJ. Tracking temporal shifts in area, biomes, and pollinators in the radiation of Salvia (sages) across continents: leveraging anchored hybrid enrichment and targeted sequence data. American Journal of Botany. PMID 30986330 DOI: 10.1002/Ajb2.1268 |
0.404 |
|
| 2019 |
Crowl AA, Manos PS, McVay JD, Lemmon AR, Lemmon EM, Hipp AL. Uncovering the genomic signature of ancient introgression between white oak lineages (Quercus). The New Phytologist. PMID 30963585 DOI: 10.1111/Nph.15842 |
0.422 |
|
| 2019 |
Baker AJ, Heraty JM, Mottern J, Zhang J, Hines HM, Lemmon AR, Lemmon EM. Inverse dispersal patterns in a group of ant parasitoids (Hymenoptera: Eucharitidae: Oraseminae) and their ant hosts Systematic Entomology. 45: 1-19. DOI: 10.1111/Syen.12371 |
0.423 |
|
| 2019 |
Li J, Stukel M, Bussies P, Skinner K, Lemmon AR, Lemmon EM, Brown K, Bekmetjev A, Swenson NG. Maple phylogeny and biogeography inferred from phylogenomic data Journal of Systematics and Evolution. 57: 594-606. DOI: 10.1111/Jse.12535 |
0.335 |
|
| 2019 |
Mason AJ, Grazziotin FG, Zaher H, Lemmon AR, Moriarty Lemmon E, Parkinson CL. Reticulate evolution in nuclear Middle America causes discordance in the phylogeny of palm‐pitvipers (Viperidae:
Bothriechis
) Journal of Biogeography. 46: 833-844. DOI: 10.1111/Jbi.13542 |
0.305 |
|
| 2019 |
Wolfe JM, Breinholt JW, Crandall KA, Lemmon AR, Lemmon EM, Timm LE, Siddall ME, Bracken-Grissom HD. A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans Proceedings of the Royal Society B. DOI: 10.1098/rspb.2019.0079 |
0.447 |
|
| 2019 |
Martin GJ, Stanger-Hall KF, Branham MA, Da Silveira LFL, Lower SE, Hall DW, Li X, Lemmon AR, Moriarty Lemmon E, Bybee SM. Higher-Level Phylogeny and Reclassification of Lampyridae (Coleoptera: Elateroidea) Insect Systematics and Diversity. 3. DOI: 10.1093/Isd/Ixz024 |
0.729 |
|
| 2019 |
Buys MH, Winkworth RC, de Lange PJ, Wilson PG, Mitchell N, Lemmon AR, Moriarty Lemmon E, Holland S, Cherry JR, Klápště J. The phylogenomics of diversification on an island: applying anchored hybrid enrichment to New Zealand Leptospermum scoparium (Myrtaceae) Botanical Journal of the Linnean Society. 191: 1-17. DOI: 10.1093/Botlinnean/Boz033 |
0.456 |
|
| 2019 |
Simon C, Gordon ERL, Moulds MS, Cole JA, Haji D, Lemmon AR, Lemmon EM, Kortyna M, Nazario K, Wade EJ, Meister RC, Goemans G, Chiswell SM, Pessacq P, Veloso C, et al. Off-target capture data, endosymbiont genes and morphology reveal a relict lineage that is sister to all other singing cicadas Biological Journal of the Linnean Society. 128: 865-886. DOI: 10.1093/Biolinnean/Blz120 |
0.455 |
|
| 2019 |
Li J, Tredici PD, Lemmon AR, Lemmon EM, Zhao Y, Fu C. Allopatric Speciation in Asia Contributed to the Diversity Anomaly between Eastern Asia and Eastern North America: Evidence from Anchored Phylogenomics of Stewartia (Theaceae) International Journal of Plant Sciences. 180: 768-777. DOI: 10.1086/704354 |
0.452 |
|
| 2018 |
Taucce PPG, Canedo C, Haddad CFB, Lemmon AR, Lemmon EM, Vences M, Lyra M. The mitochondrial genomes of five frog species of the Neotropical genus (Anura: Brachycephaloidea: Brachycephalidae). Mitochondrial Dna. Part B, Resources. 3: 915-917. PMID 33474365 DOI: 10.1080/23802359.2018.1501312 |
0.308 |
|
| 2018 |
Faria R, Chaube P, Morales HE, Larsson T, Lemmon AR, Lemmon EM, Rafajlović M, Panova M, Ravinet M, Johannesson K, Westram AM, Butlin RK. Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes. Molecular Ecology. PMID 30537056 DOI: 10.1111/Mec.14972 |
0.335 |
|
| 2018 |
Margres MJ, Patton A, Wray KP, Hassinger ATB, Ward MJ, Lemmon EM, Lemmon AR, Rokyta DR. Tipping the scales: the migration-selection balance leans toward selection in snake venoms. Molecular Biology and Evolution. PMID 30395254 DOI: 10.1093/Molbev/Msy207 |
0.354 |
|
| 2018 |
Barrow LN, Lemmon AR, Lemmon EM. Targeted Sampling and Target Capture: Assessing Phylogeographic Concordance with Genome-wide Data. Systematic Biology. 67: 979-996. PMID 30339251 DOI: 10.1093/Sysbio/Syy021 |
0.477 |
|
| 2018 |
Irisarri I, Singh P, Koblmüller S, Torres-Dowdall J, Henning F, Franchini P, Fischer C, Lemmon AR, Lemmon EM, Thallinger GG, Sturmbauer C, Meyer A. Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes. Nature Communications. 9: 3159. PMID 30089797 DOI: 10.1038/S41467-018-05479-9 |
0.35 |
|
| 2018 |
Bogarín D, Alejandro Pérez-Escobar O, Groenenberg D, Holland SD, Karremans AP, Moriarty Lemmon E, Lemmon AR, Pupulin F, Smets E, Gravendeel B. Anchored Hybrid Enrichment generated nuclear, plastid and mitochondrial markers resolve the Lepanthes horrida (Orchidaceae: Pleurothallidinae) species complex. Molecular Phylogenetics and Evolution. PMID 30041026 DOI: 10.1016/J.Ympev.2018.07.014 |
0.512 |
|
| 2018 |
Piekarski PK, Carpenter JM, Lemmon AR, Moriarty Lemmon E, Sharanowski BJ. Phylogenomic Evidence Overturns Current Conceptions of Social Evolution in Wasps (Vespidae). Molecular Biology and Evolution. 35: 2097-2109. PMID 29924339 DOI: 10.1093/Molbev/Msy124 |
0.358 |
|
| 2018 |
Johnson AJ, McKenna DD, Jordal BH, Cognato AI, Smith SM, Lemmon AR, Moriarty Lemmon EL, Hulcr J. Phylogenomics clarifies repeated evolutionary origins of inbreeding and fungus farming in bark beetles (Curculionidae, Scolytinae). Molecular Phylogenetics and Evolution. PMID 29860101 DOI: 10.1016/J.Ympev.2018.05.028 |
0.501 |
|
| 2018 |
Taheri S, James S, Roy V, Decaëns T, Williams BW, Anderson F, Rougerie R, Chang CH, Brown G, Cunha L, Stanton DWG, Da Silva E, Chen JH, Lemmon AR, Moriarty Lemmon E, et al. Complex taxonomy of the 'brush tail' peregrine earthworm Pontoscolex corethrurus. Molecular Phylogenetics and Evolution. PMID 29501375 DOI: 10.1016/J.Ympev.2018.02.021 |
0.454 |
|
| 2018 |
Caparroz R, Rocha AV, Cabanne GS, Tubaro P, Aleixo A, Lemmon EM, Lemmon AR. Mitogenomes of two neotropical bird species and the multiple independent origin of mitochondrial gene orders in Passeriformes. Molecular Biology Reports. PMID 29455315 DOI: 10.1007/S11033-018-4160-5 |
0.439 |
|
| 2018 |
Machado RJP, Gillung JP, Winterton SL, Garzón-Orduña IJ, Lemmon AR, Lemmon EM, Oswald JD. Owlflies are derived antlions: anchored phylogenomics supports a new phylogeny and classification of Myrmeleontidae (Neuroptera) Systematic Entomology. 44: 418-450. DOI: 10.1111/Syen.12334 |
0.312 |
|
| 2018 |
Percy DM, Crampton-Platt A, Sveinsson S, Lemmon AR, Lemmon EM, Ouvrard D, Burckhardt D. Resolving the psyllid tree of life: phylogenomic analyses of the superfamily Psylloidea (Hemiptera) Systematic Entomology. 43: 762-776. DOI: 10.1111/Syen.12302 |
0.304 |
|
| 2018 |
Pepper M, Sumner J, Brennan IG, Hodges K, Lemmon AR, Lemmon EM, Peterson G, Rabosky DL, Schwarzkopf L, Scott IAW, Shea G, Keogh JS. Speciation in the mountains and dispersal by rivers: Molecular phylogeny of Eulamprus
water skinks and the biogeography of Eastern Australia Journal of Biogeography. 45: 2040-2052. DOI: 10.1111/Jbi.13385 |
0.498 |
|
| 2018 |
Taucce PPG, Canedo C, Haddad CFB, Lemmon AR, Lemmon EM, Vences M, Lyra M. The mitochondrial genomes of five frog species of the Neotropical genus Ischnocnema (Anura: Brachycephaloidea: Brachycephalidae) Mitochondrial Dna Part B. 3: 915-917. DOI: 10.1080/23802359.2018.1501312 |
0.393 |
|
| 2017 |
Shin S, Clarke DJ, Lemmon AR, Lemmon EM, Aitken AL, Haddad S, Farrell BD, Marvaldi AE, Oberprieler RG, McKenna DD. Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils. Molecular Biology and Evolution. PMID 29294021 DOI: 10.1093/Molbev/Msx324 |
0.427 |
|
| 2017 |
Maddison WP, Evans SC, Hamilton CA, Bond JE, Lemmon AR, Lemmon EM. A genome-wide phylogeny of jumping spiders (Araneae, Salticidae), using anchored hybrid enrichment. Zookeys. 89-101. PMID 29134008 DOI: 10.3897/Zookeys.695.13852 |
0.482 |
|
| 2017 |
Heinicke MP, Lemmon AR, Moriarty Lemmon E, McGrath K, Blair Hedges S. Phylogenomic support for evolutionary relationships of New World Direct-developing Frogs (Anura: Terraranae). Molecular Phylogenetics and Evolution. PMID 28963082 DOI: 10.1016/J.Ympev.2017.09.021 |
0.5 |
|
| 2017 |
Margres MJ, Wray KP, Hassinger ATB, Ward MJ, McGivern JJ, Lemmon EM, Lemmon AR, Rokyta DR. Quantity, not quality: rapid adaptation in a polygenic trait proceeded exclusively through expression differentiation. Molecular Biology and Evolution. PMID 28962003 DOI: 10.1093/Molbev/Msx231 |
0.334 |
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| 2017 |
Cardillo M, Weston PH, Reynolds ZKM, Olde PM, Mast AR, Lemmon E, Lemmon AR, Bromham L. The phylogeny and biogeography of Hakea (Proteaceae) reveals the role of biome shifts in a continental plant radiation. Evolution; International Journal of Organic Evolution. PMID 28548206 DOI: 10.1111/Evo.13276 |
0.397 |
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| 2017 |
Wanke S, Granados Mendoza C, Müller S, Paizanni Guillén A, Neinhuis C, Lemmon AR, Lemmon EM, Samain MS. Recalcitrant deep and shallow nodes in Aristolochia (Aristolochiaceae) illuminated using anchored hybrid enrichment. Molecular Phylogenetics and Evolution. PMID 28535985 DOI: 10.1016/J.Ympev.2017.05.014 |
0.499 |
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| 2017 |
Margres MJ, Bigelow AT, Lemmon EM, Lemmon AR, Rokyta DR. Selection to Increase Expression, not Sequence Diversity, Precedes Gene Family Origin and Expansion in Rattlesnake Venom. Genetics. PMID 28476866 DOI: 10.1534/Genetics.117.202655 |
0.409 |
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| 2017 |
Breinholt JW, Earl C, Lemmon AR, Moriarty Lemmon E, Xiao L, Kawahara AY. Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for Anchored Phylogenomics. Systematic Biology. PMID 28472519 DOI: 10.1093/Sysbio/Syx048 |
0.51 |
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| 2017 |
Léveillé-Bourret É, Starr JR, Ford BA, Lemmon EM, Lemmon AR. Resolving Rapid Radiations Within Angiosperm Families Using Anchored Phylogenomics. Systematic Biology. PMID 28472459 DOI: 10.1093/Sysbio/Syx050 |
0.474 |
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| 2017 |
Chen X, Lemmon AR, Lemmon EM, Alexander Pyron R, Burbrink FT. Using phylogenomics to understand the link between biogeographic origins and regional diversification in ratsnakes. Molecular Phylogenetics and Evolution. PMID 28347887 DOI: 10.1016/J.Ympev.2017.03.017 |
0.466 |
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| 2017 |
Dornburg A, Townsend JP, Brooks W, Spriggs E, Eytan RI, Moore JA, Wainwright PC, Lemmon A, Lemmon EM, Near TJ. New Insights on the Sister Lineage of Percomorph Fishes with an Anchored Hybrid Enrichment Dataset. Molecular Phylogenetics and Evolution. PMID 28254474 DOI: 10.1016/J.Ympev.2017.02.017 |
0.481 |
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| 2017 |
Fragoso-Martínez I, Salazar GA, Martínez-Gordillo M, Magallón S, Sánchez-Reyes L, Moriarty Lemmon E, Lemmon AR, Sazatornil F, Granados Mendoza C. A pilot study applying the Plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae). Molecular Phylogenetics and Evolution. PMID 28189618 DOI: 10.1016/J.Ympev.2017.02.006 |
0.499 |
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| 2017 |
Mitchell N, Lewis PO, Lemmon EM, Lemmon AR, Holsinger KE. Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of Protea L. American Journal of Botany. PMID 28104589 DOI: 10.3732/Ajb.1600227 |
0.451 |
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| 2017 |
WINTERTON SL, LEMMON AR, GILLUNG JP, GARZON IJ, BADANO D, BAKKES DK, BREITKREUZ LC, ENGEL MS, LEMMON EM, LIU X, MACHADO RJ, SKEVINGTON JH, OSWALD JD. Evolution of lacewings and allied orders using anchored phylogenomics (Neuroptera, Megaloptera, Raphidioptera) Systematic Entomology. 43: 330-354. DOI: 10.1111/Syen.12278 |
0.474 |
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| 2017 |
HADDAD S, SHIN S, LEMMON AR, LEMMON EM, SVACHA P, FARRELL B, ŚLIPIŃSKI A, WINDSOR D, MCKENNA DD. Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae) Systematic Entomology. 43: 68-89. DOI: 10.1111/Syen.12257 |
0.42 |
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| 2017 |
Shahi Shavvon R, Kazempour Osaloo S, Maassoumii AA, Moharrek F, Karaman Erkul S, Lemmon AR, Lemmon EM, Michalak I, Muellner-Riehl AN, Favre A. Increasing phylogenetic support for explosively radiating taxa: The promise of high-throughput sequencing for Oxytropis
(Fabaceae) Journal of Systematics and Evolution. 55: 385-404. DOI: 10.1111/Jse.12269 |
0.503 |
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| 2017 |
Barrow LN, Soto-Centeno JA, Warwick AR, Lemmon AR, Moriarty Lemmon E. Evaluating hypotheses of expansion from refugia through comparative phylogeography of south-eastern Coastal Plain amphibians Journal of Biogeography. 44: 2692-2705. DOI: 10.1111/Jbi.13069 |
0.474 |
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| 2017 |
Dietrich CH, Allen JM, Lemmon AR, Lemmon EM, Takiya DM, Evangelista O, Walden KKO, Grady PGS, Johnson KP. Anchored Hybrid Enrichment-Based Phylogenomics of Leafhoppers and Treehoppers (Hemiptera: Cicadomorpha: Membracoidea) Insect Systematics and Diversity. 1: 57-72. DOI: 10.1093/Isd/Ixx003 |
0.512 |
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| 2017 |
Lyra ML, Joger U, Schulte U, Slimani T, El Mouden EH, Bouazza A, Künzel S, Lemmon AR, Lemmon EM, Vences M. The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets Mitochondrial Dna Part B. 2: 356-358. DOI: 10.1080/23802359.2017.1339212 |
0.389 |
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| 2016 |
Peloso PLV, Frost DR, Richards SJ, Rodrigues MT, Donnellan S, Matsui M, Raxworthy CJ, Biju SD, Lemmon EM, Lemmon AR, Wheeler WC. The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae). Cladistics : the International Journal of the Willi Hennig Society. 32: 113-140. PMID 34732021 DOI: 10.1111/cla.12118 |
0.397 |
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| 2016 |
Domingos FMCB, Colli GR, Lemmon A, Lemmon EM, Beheregaray LB. In the shadows: Phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus). Molecular Phylogenetics and Evolution. 107: 455-465. PMID 27940330 DOI: 10.1016/J.Ympev.2016.12.009 |
0.476 |
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| 2016 |
Manthey JD, Tollis M, Lemmon AR, Moriarty Lemmon E, Boissinot S. Diversification in wild populations of the model organism Anolis carolinensis: A genome-wide phylogeographic investigation. Ecology and Evolution. 6: 8115-8125. PMID 27891220 DOI: 10.1002/Ece3.2547 |
0.46 |
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| 2016 |
Stout CC, Tan M, Lemmon AR, Lemmon EM, Armbruster JW. Resolving Cypriniformes relationships using an anchored enrichment approach. Bmc Evolutionary Biology. 16: 244. PMID 27829363 DOI: 10.1186/S12862-016-0819-5 |
0.421 |
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| 2016 |
Hamilton CA, Lemmon AR, Lemmon EM, Bond JE. Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life. Bmc Evolutionary Biology. 16: 212. PMID 27733110 DOI: 10.1186/S12862-016-0769-Y |
0.421 |
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| 2016 |
Tucker DB, Colli GR, Giugliano LG, Blair Hedges S, Hendry CR, Lemmon EM, Lemmon AR, Sites JW, Alexander Pyron R. Methodological congruence in phylogenomic analyses with morphological support for teiid lizards (Sauria: Teiidae). Molecular Phylogenetics and Evolution. PMID 27395779 DOI: 10.1016/J.Ympev.2016.07.002 |
0.511 |
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| 2016 |
Young AD, Lemmon AR, Skevington JH, Mengual X, Ståhls G, Reemer M, Jordaens K, Kelso S, Lemmon EM, Hauser M, De Meyer M, Misof B, Wiegmann BM. Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae). Bmc Evolutionary Biology. 16: 143. PMID 27357120 DOI: 10.1186/S12862-016-0714-0 |
0.464 |
|
| 2016 |
Pyron RA, Hsieh FW, Lemmon AR, Lemmon EM, Hendry CR. Integrating phylogenomic and morphological data to assess candidate species-delimitation models in brown and red-bellied snakes (Storeria) Zoological Journal of the Linnean Society. 177: 937-949. DOI: 10.1111/Zoj.12392 |
0.481 |
|
| 2016 |
Morales HE, Pavlova A, Sunnucks P, Major R, Amos N, Joseph L, Wang B, Lemmon AR, Endler JA, Delhey K. Neutral and selective drivers of colour evolution in a widespread Australian passerine Journal of Biogeography. 44: 522-536. DOI: 10.1111/Jbi.12942 |
0.314 |
|
| 2015 |
Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC. Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics. Molecular Phylogenetics and Evolution. PMID 26518740 DOI: 10.1016/J.Ympev.2015.10.027 |
0.38 |
|
| 2015 |
Ruane S, Raxworthy CJ, Lemmon AR, Lemmon EM, Burbrink FT. Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes. Bmc Evolutionary Biology. 15: 221. PMID 26459325 DOI: 10.1186/S12862-015-0503-1 |
0.527 |
|
| 2015 |
Prum RO, Berv JS, Dornburg A, Field DJ, Townsend JP, Lemmon EM, Lemmon AR. A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature. 526: 569-73. PMID 26444237 DOI: 10.1038/Nature15697 |
0.513 |
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| 2015 |
Funk WC, Murphy MA, Hoke KL, Muths E, Amburgey SM, Lemmon EM, Lemmon AR. Elevational speciation in action? Restricted gene flow associated with adaptive divergence across an altitudinal gradient. Journal of Evolutionary Biology. PMID 26363130 DOI: 10.1111/Jeb.12760 |
0.352 |
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| 2015 |
Eytan RI, Evans BR, Dornburg A, Lemmon AR, Lemmon EM, Wainwright PC, Near TJ. Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment. Bmc Evolutionary Biology. 15: 113. PMID 26071950 DOI: 10.1186/S12862-015-0415-0 |
0.455 |
|
| 2015 |
Brandley MC, Bragg JG, Singhal S, Chapple DG, Jennings CK, Lemmon AR, Lemmon EM, Thompson MB, Moritz C. Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards. Bmc Evolutionary Biology. 15: 62. PMID 25880916 DOI: 10.1186/S12862-015-0318-0 |
0.488 |
|
| 2015 |
Peloso PLV, Frost DR, Richards SJ, Rodrigues MT, Donnellan S, Matsui M, Raxworthy CJ, Biju SD, Lemmon EM, Lemmon AR, Wheeler WC. The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae) Cladistics. DOI: 10.1111/Cla.12118 |
0.492 |
|
| 2014 |
Pyron RA, Hendry CR, Chou VM, Lemmon EM, Lemmon AR, Burbrink FT. Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia). Molecular Phylogenetics and Evolution. 81: 221-31. PMID 25193610 DOI: 10.1016/J.Ympev.2014.08.023 |
0.52 |
|
| 2014 |
Leaché AD, Wagner P, Linkem CW, Böhme W, Papenfuss TJ, Chong RA, Lavin BR, Bauer AM, Nielsen SV, Greenbaum E, Rödel MO, Schmitz A, LeBreton M, Ineich I, Chirio L, ... ... Lemmon AR, et al. A hybrid phylogenetic-phylogenomic approach for species tree estimation in African Agama lizards with applications to biogeography, character evolution, and diversification. Molecular Phylogenetics and Evolution. 79: 215-30. PMID 24973715 DOI: 10.1016/J.Ympev.2014.06.013 |
0.484 |
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| 2013 |
Lemmon EM, Lemmon AR. High-throughput genomic data in systematics and phylogenetics Annual Review of Ecology, Evolution, and Systematics. 44: 99-121. DOI: 10.1146/Annurev-Ecolsys-110512-135822 |
0.397 |
|
| 2012 |
Rokyta DR, Lemmon AR, Margres MJ, Aronow K. The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus). Bmc Genomics. 13: 312. PMID 23025625 DOI: 10.1186/1471-2164-13-312 |
0.359 |
|
| 2012 |
Lemmon AR, Lemmon EM. High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography. Systematic Biology. 61: 745-61. PMID 22610088 DOI: 10.1093/Sysbio/Sys051 |
0.46 |
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| 2012 |
Lemmon AR, Emme SA, Lemmon EM. Anchored hybrid enrichment for massively high-throughput phylogenomics. Systematic Biology. 61: 727-44. PMID 22605266 DOI: 10.1093/Sysbio/Sys049 |
0.439 |
|
| 2011 |
Deiner K, Lemmon AR, Mack AL, Fleischer RC, Dumbacher JP. A Passerine Bird's evolution corroborates the geologic history of the island of New Guinea. Plos One. 6: e19479. PMID 21573115 DOI: 10.1371/Journal.Pone.0019479 |
0.489 |
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| 2011 |
Rokyta DR, Wray KP, Lemmon AR, Lemmon EM, Caudle SB. A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes. Toxicon : Official Journal of the International Society On Toxinology. 57: 657-71. PMID 21255598 DOI: 10.1016/J.Toxicon.2011.01.008 |
0.352 |
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| 2010 |
Brown JM, Hedtke SM, Lemmon AR, Lemmon EM. When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates. Systematic Biology. 59: 145-61. PMID 20525627 DOI: 10.1093/Sysbio/Syp081 |
0.747 |
|
| 2010 |
Lemmon EM, Lemmon AR. Reinforcement in chorus frogs: lifetime fitness estimates including intrinsic natural selection and sexual selection against hybrids. Evolution; International Journal of Organic Evolution. 64: 1748-61. PMID 20100218 DOI: 10.1111/J.1558-5646.2010.00955.X |
0.353 |
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| 2009 |
Lemmon AR, Brown JM, Stanger-Hall K, Lemmon EM. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Systematic Biology. 58: 130-45. PMID 20525573 DOI: 10.1093/Sysbio/Syp017 |
0.768 |
|
| 2008 |
Lemmon AR, Lemmon EM. A likelihood framework for estimating phylogeographic history on a continuous landscape. Systematic Biology. 57: 544-61. PMID 18686193 DOI: 10.1080/10635150802304761 |
0.465 |
|
| 2008 |
Lemmon EM, Lemmon AR, Collins JT, Cannatella DC. A new North American chorus frog species (Amphibia: Hylidae: Pseudacris) from the south-central United States Zootaxa. 1-30. DOI: 10.11646/Zootaxa.1675.1.1 |
0.379 |
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| 2007 |
Lemmon EM, Lemmon AR, Cannatella DC. Geological and climatic forces driving speciation in the continentally distributed trilling chorus frogs (Pseudacris). Evolution; International Journal of Organic Evolution. 61: 2086-103. PMID 17767584 DOI: 10.1111/J.1558-5646.2007.00181.X |
0.393 |
|
| 2007 |
Brown JM, Lemmon AR. The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Systematic Biology. 56: 643-55. PMID 17661232 DOI: 10.1080/10635150701546249 |
0.647 |
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| 2007 |
Lemmon EM, Lemmon AR, Collins JT, Lee-Yaw JA, Cannatella DC. Phylogeny-based delimitation of species boundaries and contact zones in the trilling chorus frogs (Pseudacris). Molecular Phylogenetics and Evolution. 44: 1068-82. PMID 17562372 DOI: 10.1016/J.Ympev.2007.04.010 |
0.454 |
|
| 2006 |
Lemmon AR, Kirkpatrick M. Reinforcement and the genetics of hybrid incompatibilities. Genetics. 173: 1145-55. PMID 16547116 DOI: 10.1534/Genetics.105.048199 |
0.533 |
|
| 2004 |
Lemmon AR, Moriarty EC. The importance of proper model assumption in bayesian phylogenetics. Systematic Biology. 53: 265-77. PMID 15205052 DOI: 10.1080/10635150490423520 |
0.724 |
|
| 2004 |
Lemmon AR, Smadja C, Kirkpatrick M. Reproductive character displacement is not the only possible outcome of reinforcement. Journal of Evolutionary Biology. 17: 177-83. PMID 15000660 DOI: 10.1046/J.1420-9101.2003.00643.X |
0.519 |
|
| 2002 |
Lemmon AR, Milinkovitch MC. The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation. Proceedings of the National Academy of Sciences of the United States of America. 99: 10516-21. PMID 12142465 DOI: 10.1073/Pnas.162224399 |
0.358 |
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