| Year |
Citation |
Score |
| 2023 |
Rolland J, Henao-Diaz LF, Doebeli M, Germain R, Harmon LJ, Knowles LL, Liow LH, Mank JE, Machac A, Otto SP, Pennell M, Salamin N, Silvestro D, Sugawara M, Uyeda J, et al. Conceptual and empirical bridges between micro- and macroevolution. Nature Ecology & Evolution. PMID 37429904 DOI: 10.1038/s41559-023-02116-7 |
0.347 |
|
| 2023 |
Fiorini CF, de Camargo Smidt E, Knowles LL, Leite Borba E. Hybridization boosters diversification in a Neotropical Bulbophyllum (Orchidaceae) group. Molecular Phylogenetics and Evolution. 186: 107858. PMID 37329930 DOI: 10.1016/j.ympev.2023.107858 |
0.344 |
|
| 2023 |
F Fiorini C, Leite Borba E, C Resende-Moreira L, Smidt EC, Knowles LL. Geographic isolation alone does not explain divergence of a group of orchid species across Brazil's campos rupestres sky-islands. Evolution; International Journal of Organic Evolution. PMID 36688535 DOI: 10.1093/evolut/qpad010 |
0.469 |
|
| 2022 |
Luna LW, Naka LN, Thom G, Knowles LL, Sawakuchi AO, Aleixo A, Ribas CC. Late Pleistocene landscape changes and habitat specialization as promoters of population genomic divergence in Amazonian floodplain birds. Molecular Ecology. PMID 36261866 DOI: 10.1111/mec.16741 |
0.417 |
|
| 2022 |
Auteri GG, Marchán-Rivadeneira MR, Olson DH, Knowles LL. Landscape connectivity among coastal giant salamander (Dicamptodon tenebrosus) populations shows no association with land use, fire frequency, or river drainage but exhibits genetic signatures of potential conservation concern. Plos One. 17: e0268882. PMID 35675274 DOI: 10.1371/journal.pone.0268882 |
0.329 |
|
| 2022 |
Ortego J, Knowles LL. Geographical isolation versus dispersal: Relictual alpine grasshoppers support a model of interglacial diversification with limited hybridization. Molecular Ecology. 31: 296-312. PMID 34651368 DOI: 10.1111/mec.16225 |
0.447 |
|
| 2021 |
Nazareno AG, Knowles LL. There Is No 'Rule of Thumb': Genomic Filter Settings for a Small Plant Population to Obtain Unbiased Gene Flow Estimates. Frontiers in Plant Science. 12: 677009. PMID 34721447 DOI: 10.3389/fpls.2021.677009 |
0.33 |
|
| 2021 |
do Amaral KB, Barragán-Barrera DC, Mesa-Gutiérrez RA, Farías-Curtidor N, Caballero Gaitán SJ, Méndez-Fernandez P, Santos MCO, Rinaldi C, Rinaldi R, Siciliano S, Martín V, Carrillo M, de Meirelles ACO, Franco-Trecu V, Fagundes NJR, ... ... Knowles LL, et al. Seascape genetics of the Atlantic spotted dolphin (Stenella frontalis) based on mitochondrial DNA. The Journal of Heredity. PMID 34453543 DOI: 10.1093/jhered/esab050 |
0.307 |
|
| 2021 |
Miralles A, Ducasse J, Brouillet S, Flouri T, Fujisawa T, Kapli P, Knowles LL, Kumari S, Stamatakis A, Sukumaran J, Lutteropp S, Vences M, Puillandre N. SPART: A versatile and standardized data exchange format for species partition information. Molecular Ecology Resources. PMID 34288531 DOI: 10.1111/1755-0998.13470 |
0.728 |
|
| 2021 |
Sukumaran J, Holder MT, Knowles LL. Incorporating the speciation process into species delimitation. Plos Computational Biology. 17: e1008924. PMID 33983918 DOI: 10.1371/journal.pcbi.1008924 |
0.808 |
|
| 2021 |
Nazareno AG, Knowles LL, Dick CW, Lohmann LG. By Animal, Water, or Wind: Can Dispersal Mode Predict Genetic Connectivity in Riverine Plant Species? Frontiers in Plant Science. 12: 626405. PMID 33643353 DOI: 10.3389/fpls.2021.626405 |
0.321 |
|
| 2021 |
Vanhove M, Pina-Martins F, Coelho AC, Branquinho C, Costa A, Batista D, Silva A, Sousa P, Henriques A, Marques I, Belkadi B, Knowles LL, Paulo OS. Using gradient Forest to predict climate response and adaptation in Cork oak. Journal of Evolutionary Biology. PMID 33484040 DOI: 10.1111/jeb.13765 |
0.355 |
|
| 2021 |
Wan T, Oaks JR, Jiang XL, Huang H, Knowles LL. Differences in Quaternary co-divergence reveals community-wide diversification in the mountains of southwest China varied among species. Proceedings. Biological Sciences. 288: 20202567. PMID 33402075 DOI: 10.1098/rspb.2020.2567 |
0.749 |
|
| 2021 |
Hodel RGJ, Massatti R, Bishop SGD, Knowles LL. Testing which axes of species differentiation underlie covariance of phylogeographic similarity among montane sedge species. Evolution; International Journal of Organic Evolution. PMID 33386752 DOI: 10.1111/evo.14159 |
0.464 |
|
| 2020 |
Prado JRD, Knowles LL, Percequillo AR. New species boundaries and the diversification history of marsh rat taxa clarify historical connections among ecologically and geographically distinct wetlands of South America. Molecular Phylogenetics and Evolution. 106992. PMID 33096231 DOI: 10.1016/j.ympev.2020.106992 |
0.459 |
|
| 2020 |
Barreto SB, Knowles LL, Affonso PRAM, Batalha-Filho H. Riverscape properties contribute to the origin and structure of a hybrid zone in a Neotropical freshwater fish. Journal of Evolutionary Biology. PMID 32862491 DOI: 10.1111/Jeb.13689 |
0.453 |
|
| 2020 |
Fischer G, Friedman NR, Huang JP, Narula N, Knowles LL, Fisher BL, Mikheyev AS, Economo EP. Socially Parasitic Ants Evolve a Mosaic of Host-Matching and Parasitic Morphological Traits. Current Biology : Cb. PMID 32707068 DOI: 10.1016/J.Cub.2020.06.078 |
0.36 |
|
| 2020 |
Ortego J, Knowles LL. Incorporating interspecific interactions into phylogeographic models: A case study with Californian oaks. Molecular Ecology. PMID 32657460 DOI: 10.1111/Mec.15548 |
0.463 |
|
| 2020 |
Auteri GG, Knowles LL. Decimated little brown bats show potential for adaptive change. Scientific Reports. 10: 3023. PMID 32080246 DOI: 10.1038/S41598-020-59797-4 |
0.407 |
|
| 2020 |
Becheler A, Knowles LL. Occupancy spectrum distribution: application for coalescence simulation with generic mergers. Bioinformatics (Oxford, England). PMID 32049321 DOI: 10.1093/Bioinformatics/Btaa090 |
0.312 |
|
| 2020 |
Thomaz AT, Knowles LL. Common barriers, but temporal dissonance: genomic tests suggest ecological and paleo-landscape sieves structure a coastal riverine fish community. Molecular Ecology. PMID 31958183 DOI: 10.1111/Mec.15357 |
0.511 |
|
| 2020 |
Huang J, Hill JVG, Ortego J, Knowles LL. Paraphyletic species no more – genomic data resolve a Pleistocene radiation and validate morphological species of the Melanoplus scudderi complex (Insecta: Orthoptera) Systematic Entomology. 45: 594-605. DOI: 10.1111/Syen.12415 |
0.461 |
|
| 2020 |
Massatti R, Knowles LL. The historical context of contemporary climatic adaptation: a case study in the climatically dynamic and environmentally complex southwestern United States Ecography. 43: 735-746. DOI: 10.1111/Ecog.04840 |
0.428 |
|
| 2019 |
Rubi TL, Knowles LL, Dantzer B. Museum epigenomics: characterizing cytosine methylation in historic museum specimens. Molecular Ecology Resources. PMID 31682062 DOI: 10.1111/1755-0998.13115 |
0.331 |
|
| 2019 |
Bemmels JB, Knowles LL, Dick CW. Genomic evidence of survival near ice sheet margins for some, but not all, North American trees. Proceedings of the National Academy of Sciences of the United States of America. PMID 30962371 DOI: 10.1073/Pnas.1901656116 |
0.515 |
|
| 2019 |
Bravo GA, Antonelli A, Bacon CD, Bartoszek K, Blom MPK, Huynh S, Jones G, Knowles LL, Lamichhaney S, Marcussen T, Morlon H, Nakhleh LK, Oxelman B, Pfeil B, Schliep A, et al. Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. Peerj. 7: e6399. PMID 30783571 DOI: 10.7717/Peerj.6399 |
0.434 |
|
| 2019 |
Prado JR, Percequillo AR, Thomaz AT, Knowles L. Similar but different: Revealing the relative roles of species‐traits versus biome properties structuring genetic variation in South American marsh rats Journal of Biogeography. 46: 770-783. DOI: 10.1111/Jbi.13529 |
0.318 |
|
| 2019 |
Resende‐Moreira LC, Knowles LL, Thomaz AT, Prado JR, Souto AP, Lemos‐Filho JP, Lovato MB. Evolving in isolation: Genetic tests reject recent connections of Amazonian savannas with the central Cerrado Journal of Biogeography. 46: 196-211. DOI: 10.1111/Jbi.13468 |
0.326 |
|
| 2019 |
Emel SL, Olson DH, Knowles LL, Storfer A. Comparative landscape genetics of two endemic torrent salamander species, Rhyacotriton kezeri and R. variegatus : implications for forest management and species conservation Conservation Genetics. 20: 801-815. DOI: 10.1007/S10592-019-01172-6 |
0.522 |
|
| 2018 |
Thomaz AT, Carvalho TP, Malabarba LR, Knowles LL. Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): Insights about diversification among sympatric species pools. Molecular Phylogenetics and Evolution. 132: 265-274. PMID 30528083 DOI: 10.1016/J.Ympev.2018.12.008 |
0.536 |
|
| 2018 |
Hodel RGJ, Knowles LL, McDaniel SF, Payton AC, Dunaway JF, Soltis PS, Soltis DE. Terrestrial species adapted to sea dispersal: differences in propagule dispersal of two Caribbean mangroves. Molecular Ecology. PMID 30308703 DOI: 10.1111/Mec.14894 |
0.529 |
|
| 2018 |
Li J, Huang JP, Sukumaran J, Knowles LL. Microevolutionary processes impact macroevolutionary patterns. Bmc Evolutionary Biology. 18: 123. PMID 30097006 DOI: 10.1186/S12862-018-1236-8 |
0.722 |
|
| 2018 |
Knowles LL, Huang H, Sukumaran J, Smith SA. A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories. American Journal of Botany. PMID 29710372 DOI: 10.1002/Ajb2.1064 |
0.786 |
|
| 2018 |
Sukumaran J, Knowles LL. Trait-Dependent Biogeography: (Re)Integrating Biology into Probabilistic Historical Biogeographical Models. Trends in Ecology & Evolution. PMID 29685579 DOI: 10.1016/J.Tree.2018.03.010 |
0.723 |
|
| 2018 |
Sturaro MJ, Rodrigues MT, Colli GR, Knowles LL, Avila-Pires TC. Integrative taxonomy of the lizards Cercosaura ocellata species complex (Reptilia: Gymnophthalmidae) Zoologischer Anzeiger. 275: 37-65. DOI: 10.1016/J.Jcz.2018.04.004 |
0.499 |
|
| 2017 |
Papadopoulou A, Knowles LL. Linking micro- and macroevolutionary perspectives to evaluate the role of Quaternary sea-level oscillations in island diversification. Evolution; International Journal of Organic Evolution. PMID 29076151 DOI: 10.1111/Evo.13384 |
0.456 |
|
| 2017 |
He Q, Prado JR, Knowles LL. Inferring the geographic origin of a range expansion: latitudinal and longitudinal coordinates inferred from genomic data in an ABC framework with the program x-origin. Molecular Ecology. PMID 29044712 DOI: 10.1111/mec.14380 |
0.325 |
|
| 2017 |
Thomaz AT, Malabarba LR, Knowles LL. Genomic signatures of paleodrainages in a freshwater fish along the southeastern coast of Brazil: genetic structure reflects past riverine properties. Heredity. 119: 287-294. PMID 28767104 DOI: 10.1038/Hdy.2017.46 |
0.454 |
|
| 2017 |
Sukumaran J, Knowles LL. Multispecies coalescent delimits structure, not species. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137871 DOI: 10.1073/Pnas.1607921114 |
0.755 |
|
| 2017 |
Knowles LL, Massatti R. Distributional shifts– not geographic isolation – as a probable driver of montane species divergence Ecography. 40: 1475-1485. DOI: 10.1111/Ecog.02893 |
0.502 |
|
| 2016 |
Muñoz-Ramírez CP, Bitton PP, Doucet SM, Knowles LL. Mimics here and there, but not everywhere: Müllerian mimicry in Ceroglossus ground beetles? Biology Letters. 12. PMID 27677815 DOI: 10.1098/Rsbl.2016.0429 |
0.511 |
|
| 2016 |
Bemmels JB, Title PO, Ortego J, Knowles LL. Tests of species-specific models reveal the importance of drought in postglacial range shifts of a Mediterranean-climate tree: insights from iDDC modelling and ABC model selection. Molecular Ecology. PMID 27540890 DOI: 10.1111/Mec.13804 |
0.505 |
|
| 2016 |
Papadopoulou A, Knowles LL. Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses. Proceedings of the National Academy of Sciences of the United States of America. 113: 8018-24. PMID 27432974 DOI: 10.1073/Pnas.1601069113 |
0.472 |
|
| 2016 |
Massatti R, Knowles LL. Contrasting support for alternative models of genomic variation based on microhabitat preference: species-specific effects of climate change in alpine sedges. Molecular Ecology. PMID 27317885 DOI: 10.1111/Mec.13735 |
0.533 |
|
| 2016 |
Wachter GA, Papadopoulou A, Muster C, Arthofer W, Knowles LL, Steiner FM, Schlick-Steiner BC. Glacial refugia, recolonisation patterns, and diversification forces in Alpine-endemic Megabunus harvestmen. Molecular Ecology. PMID 27037513 DOI: 10.1111/Mec.13634 |
0.444 |
|
| 2016 |
He Q, Knowles LL. Identifying targets of selection in mosaic genomes with machine learning: applications in Anopheles gambiae for detecting sites within locally adapted chromosomal inversions. Molecular Ecology. PMID 26994406 DOI: 10.1111/Mec.13619 |
0.421 |
|
| 2016 |
Thomaz AT, Christie MR, Knowles LL. The architecture of river networks can drive the evolutionary dynamics of aquatic populations. Evolution; International Journal of Organic Evolution. PMID 26888211 DOI: 10.1111/Evo.12883 |
0.422 |
|
| 2016 |
Massatti R, Reznicek AA, Knowles LL. Utilizing RADseq data for phylogenetic analysis of challenging taxonomic groups: A case study in Carex sect. Racemosae. American Journal of Botany. PMID 26851268 DOI: 10.3732/Ajb.1500315 |
0.506 |
|
| 2016 |
Knowles LL, Chappell TM, Marquez EJ, Cohn TJ. Tests of the Role of Sexual Selection in Genitalic Divergence with Mutiple Hybrid Clines Journal of Orthoptera Research. 25: 75-82. DOI: 10.1665/034.025.0206 |
0.429 |
|
| 2016 |
Knowles LL, Massatti R, He Q, Olson LE, Lanier HC. Quantifying the similarity between genes and geography across Alaska's alpine small mammals Journal of Biogeography. DOI: 10.1111/Jbi.12728 |
0.522 |
|
| 2015 |
Economo EP, Sarnat EM, Janda M, Clouse R, Klimov PB, Fischer G, Blanchard BD, Ramirez LN, Andersen AN, Berman M, Guénard B, Lucky A, Rabeling C, Wilson EO, Knowles LL. Breaking out of biogeographical modules: range expansion and taxon cycles in the hyperdiverse ant genus Pheidole. Journal of Biogeography. 42: 2289-2301. PMID 27660394 DOI: 10.1111/Jbi.12592 |
0.425 |
|
| 2015 |
Sukumaran J, Economo EP, Knowles LL. Machine Learning Biogeographic Processes from Biotic Patterns: A New Trait-Dependent Dispersal and Diversification Model with Model Choice By Simulation-Trained Discriminant Analysis. Systematic Biology. PMID 26715585 DOI: 10.1093/Sysbio/Syv121 |
0.706 |
|
| 2015 |
Huang JP, Knowles LL. The species versus subspecies conundrum: quantitative delimitation from integrating multiple data types within a single Bayesian approach in Hercules beetles. Systematic Biology. PMID 26681696 DOI: 10.1093/Sysbio/Syv119 |
0.565 |
|
| 2015 |
Papadopoulou A, Knowles LL. Species-specific responses to island connectivity cycles: refined models for testing phylogeographic concordance across a Mediterranean Pleistocene Aggregate Island Complex. Molecular Ecology. 24: 4252-68. PMID 26154606 DOI: 10.1111/Mec.13305 |
0.542 |
|
| 2015 |
Lanier HC, Massatti R, He Q, Olson LE, Knowles LL. Colonization from divergent ancestors: glaciation signatures on contemporary patterns of genomic variation in Collared Pikas (Ochotona collaris). Molecular Ecology. PMID 26096099 DOI: 10.1111/Mec.13270 |
0.463 |
|
| 2015 |
Christie MR, Knowles LL. Habitat corridors facilitate genetic resilience irrespective of species dispersal abilities or population sizes. Evolutionary Applications. 8: 454-63. PMID 26029259 DOI: 10.1111/Eva.12255 |
0.468 |
|
| 2015 |
Papadopoulou A, Knowles LL. Genomic tests of the species-pump hypothesis: Recent island connectivity cycles drive population divergence but not speciation in Caribbean crickets across the Virgin Islands. Evolution; International Journal of Organic Evolution. 69: 1501-17. PMID 25903255 DOI: 10.1111/Evo.12667 |
0.512 |
|
| 2015 |
Solís-Lemus C, Knowles LL, Ané C. Bayesian species delimitation combining multiple genes and traits in a unified framework. Evolution; International Journal of Organic Evolution. 69: 492-507. PMID 25495061 DOI: 10.1111/Evo.12582 |
0.508 |
|
| 2015 |
Lanier HC, Knowles LL. Applying species-tree analyses to deep phylogenetic histories: challenges and potential suggested from a survey of empirical phylogenetic studies. Molecular Phylogenetics and Evolution. 83: 191-9. PMID 25450097 DOI: 10.1016/J.Ympev.2014.10.022 |
0.578 |
|
| 2015 |
Economo EP, Klimov P, Sarnat EM, Guénard B, Weiser MD, Lecroq B, Knowles LL. Global phylogenetic structure of the hyperdiverse ant genus Pheidole reveals the repeated evolution of macroecological patterns. Proceedings. Biological Sciences / the Royal Society. 282: 20141416. PMID 25429013 DOI: 10.1098/Rspb.2014.1416 |
0.405 |
|
| 2015 |
Thomaz AT, Malabarba LR, Bonatto SL, Knowles LL. Testing the effect of palaeodrainages versus habitat stability on genetic divergence in riverine systems: Study of a Neotropical fish of the Brazilian coastal Atlantic Forest Journal of Biogeography. 42: 2389-2401. DOI: 10.1111/Jbi.12597 |
0.487 |
|
| 2014 |
Massatti R, Knowles LL. Microhabitat differences impact phylogeographic concordance of codistributed species: genomic evidence in montane sedges (Carex L.) from the Rocky Mountains. Evolution; International Journal of Organic Evolution. 68: 2833-46. PMID 25041894 DOI: 10.1111/Evo.12491 |
0.508 |
|
| 2014 |
Huang H, Knowles LL. Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences. Systematic Biology. PMID 24996413 DOI: 10.1093/Sysbio/Syu046 |
0.718 |
|
| 2014 |
Huang H, Tran LA, Knowles LL. Do estimated and actual species phylogenies match? Evaluation of East African cichlid radiations. Molecular Phylogenetics and Evolution. 78: 56-65. PMID 24837624 DOI: 10.1016/J.Ympev.2014.05.010 |
0.795 |
|
| 2014 |
Edwards DL, Knowles LL. Species detection and individual assignment in species delimitation: can integrative data increase efficacy? Proceedings. Biological Sciences / the Royal Society. 281: 20132765. PMID 24403337 DOI: 10.1098/Rspb.2013.2765 |
0.536 |
|
| 2014 |
Olave M, Solà E, Knowles LL. Upstream analyses create problems with DNA-based species delimitation. Systematic Biology. 63: 263-71. PMID 24361591 DOI: 10.1093/Sysbio/Syt106 |
0.379 |
|
| 2014 |
Alvarado-Serrano DF, Knowles LL. Ecological niche models in phylogeographic studies: applications, advances and precautions. Molecular Ecology Resources. 14: 233-48. PMID 24119244 DOI: 10.1111/1755-0998.12184 |
0.369 |
|
| 2014 |
Lanier HC, Huang H, Knowles LL. How low can you go? The effects of mutation rate on the accuracy of species-tree estimation. Molecular Phylogenetics and Evolution. 70: 112-9. PMID 24060367 DOI: 10.1016/J.Ympev.2013.09.006 |
0.791 |
|
| 2013 |
He Q, Edwards DL, Knowles LL. Integrative testing of how environments from the past to the present shape genetic structure across landscapes. Evolution; International Journal of Organic Evolution. 67: 3386-402. PMID 24299395 DOI: 10.1111/Evo.12159 |
0.424 |
|
| 2013 |
Alvarado-Serrano DF, Luna L, Knowles LL. Localized versus generalist phenotypes in a broadly distributed tropical mammal: how is intraspecific variation distributed across disparate environments? Bmc Evolutionary Biology. 13: 160. PMID 23899319 DOI: 10.1186/1471-2148-13-160 |
0.435 |
|
| 2013 |
Hovmöller R, Knowles LL, Kubatko LS. Effects of missing data on species tree estimation under the coalescent. Molecular Phylogenetics and Evolution. 69: 1057-62. PMID 23769751 DOI: 10.1016/J.Ympev.2013.06.004 |
0.56 |
|
| 2013 |
Oneal E, Knowles LL. Ecological selection as the cause and sexual differentiation as the consequence of species divergence? Proceedings. Biological Sciences / the Royal Society. 280: 20122236. PMID 23173206 DOI: 10.1098/Rspb.2012.2236 |
0.41 |
|
| 2013 |
Lanier HC, Edwards DL, Knowles LL. Phylogenetic structure of vertebrate communities across the Australian arid zone Journal of Biogeography. 40: 1059-1070. DOI: 10.1111/Jbi.12077 |
0.399 |
|
| 2013 |
Calonje M, Meerow AW, Knowles L, Knowles D, Griffith MP, Nakamura K, Francisco-Ortega J. Cycad biodiversity in the Bahamas Archipelago and conservation genetics of the threatened Zamia lucayana (Zamiaceae) Oryx. 47: 190-198. DOI: 10.1017/S0030605312000129 |
0.378 |
|
| 2012 |
Knowles LL, Lanier HC, Klimov PB, He Q. Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy. Molecular Phylogenetics and Evolution. 65: 501-9. PMID 22835380 DOI: 10.1016/J.Ympev.2012.07.004 |
0.556 |
|
| 2012 |
Brown JL, Knowles LL. Spatially explicit models of dynamic histories: examination of the genetic consequences of Pleistocene glaciation and recent climate change on the American Pika. Molecular Ecology. 21: 3757-75. PMID 22702844 DOI: 10.1111/J.1365-294X.2012.05640.X |
0.491 |
|
| 2012 |
Edwards DL, Keogh JS, Knowles LL. Effects of vicariant barriers, habitat stability, population isolation and environmental features on species divergence in the south-western Australian coastal reptile community. Molecular Ecology. 21: 3809-22. PMID 22646317 DOI: 10.1111/J.1365-294X.2012.05637.X |
0.551 |
|
| 2012 |
Lanier HC, Knowles LL. Is recombination a problem for species-tree analyses? Systematic Biology. 61: 691-701. PMID 22215721 DOI: 10.1093/Sysbio/Syr128 |
0.336 |
|
| 2011 |
Knowles LL, Klimov PB. Estimating phylogenetic relationships despite discordant gene trees across loci: the species tree of a diverse species group of feather mites (Acari: Proctophyllodidae). Parasitology. 138: 1750-9. PMID 21554840 DOI: 10.1017/S003118201100031X |
0.579 |
|
| 2011 |
Klimov PB, Knowles LL. Repeated parallel evolution of minimal rRNAs revealed from detailed comparative analysis. The Journal of Heredity. 102: 283-93. PMID 21422103 DOI: 10.1093/Jhered/Esr005 |
0.321 |
|
| 2011 |
McCormack JE, Heled J, Delaney KS, Peterson AT, Knowles LL. Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays. Evolution; International Journal of Organic Evolution. 65: 184-202. PMID 20681982 DOI: 10.1111/J.1558-5646.2010.01097.X |
0.455 |
|
| 2010 |
Carstens BC, Knowles LL. Navigating the unknown: model selection in phylogeography. Models of population structure: tools for thinkers. Molecular Ecology. 19: 4581-2. PMID 20958809 DOI: 10.1111/J.1365-294X.2010.04851.X |
0.374 |
|
| 2010 |
Huang H, He Q, Kubatko LS, Knowles LL. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods. Systematic Biology. 59: 573-83. PMID 20833951 DOI: 10.1093/Sysbio/Syq047 |
0.763 |
|
| 2010 |
Knowles LL, Alvarado-Serrano DF. Exploring the population genetic consequences of the colonization process with spatio-temporally explicit models: insights from coupled ecological, demographic and genetic models in montane grasshoppers. Molecular Ecology. 19: 3727-45. PMID 20723059 DOI: 10.1111/j.1365-294X.2010.04702.x |
0.401 |
|
| 2010 |
McCormack JE, Zellmer AJ, Knowles LL. Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation? Insights from tests with niche models. Evolution; International Journal of Organic Evolution. 64: 1231-44. PMID 19922442 DOI: 10.1111/J.1558-5646.2009.00900.X |
0.46 |
|
| 2010 |
Oneal E, Otte D, Knowles LL. Testing for biogeographic mechanisms promoting divergence in Caribbean crickets (genus Amphiacusta) Journal of Biogeography. 37: 530-540. DOI: 10.1111/J.1365-2699.2009.02231.X |
0.492 |
|
| 2009 |
Huang H, Knowles LL. What is the danger of the anomaly zone for empirical phylogenetics? Systematic Biology. 58: 527-36. PMID 20525606 DOI: 10.1093/Sysbio/Syp047 |
0.784 |
|
| 2009 |
McCormack JE, Huang H, Knowles LL. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design. Systematic Biology. 58: 501-8. PMID 20525604 DOI: 10.1093/Sysbio/Syp045 |
0.792 |
|
| 2009 |
Knowles LL. Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. Systematic Biology. 58: 463-7. PMID 20525600 DOI: 10.1093/sysbio/syp061 |
0.413 |
|
| 2009 |
Zellmer AJ, Knowles LL. Disentangling the effects of historic vs. contemporary landscape structure on population genetic divergence. Molecular Ecology. 18: 3593-602. PMID 19674302 DOI: 10.1111/J.1365-294X.2009.04305.X |
0.414 |
|
| 2009 |
Kubatko LS, Carstens BC, Knowles LL. STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics (Oxford, England). 25: 971-3. PMID 19211573 DOI: 10.1093/Bioinformatics/Btp079 |
0.39 |
|
| 2008 |
Knowles LL. Why does a method that fails continue to be used? Evolution; International Journal of Organic Evolution. 62: 2713-7. PMID 18973487 DOI: 10.1111/J.1558-5646.2008.00481.X |
0.396 |
|
| 2008 |
Gray DA, Huang H, Knowles LL. Molecular evidence of a peripatric origin for two sympatric species of field crickets (Gryllus rubens and G. texensis) revealed from coalescent simulations and population genetic tests. Molecular Ecology. 17: 3836-55. PMID 18647239 DOI: 10.1111/J.1365-294X.2008.03827.X |
0.772 |
|
| 2008 |
Knowles LL, Chan YH. Resolving species phylogenies of recent evolutionary radiations Annals of the Missouri Botanical Garden. 95: 224-231. DOI: 10.3417/2006102 |
0.322 |
|
| 2007 |
Connallon T, Knowles LL. Recombination rate and protein evolution in yeast. Bmc Evolutionary Biology. 7: 235. PMID 18042299 DOI: 10.1186/1471-2148-7-235 |
0.693 |
|
| 2007 |
Knowles LL, Carstens BC. Delimiting species without monophyletic gene trees. Systematic Biology. 56: 887-95. PMID 18027282 DOI: 10.1080/10635150701701091 |
0.516 |
|
| 2007 |
Márquez EJ, Knowles LL. Correlated evolution of multivariate traits: detecting co-divergence across multiple dimensions. Journal of Evolutionary Biology. 20: 2334-48. PMID 17956395 DOI: 10.1111/J.1420-9101.2007.01415.X |
0.495 |
|
| 2007 |
Richards CL, Knowles LL. Tests of phenotypic and genetic concordance and their application to the conservation of Panamanian golden frogs (Anura, Bufonidae). Molecular Ecology. 16: 3119-33. PMID 17651191 DOI: 10.1111/j.1365-294X.2007.03369.x |
0.389 |
|
| 2007 |
Klimov PB, O'Connor BM, Knowles LL. Museum specimens and phylogenies elucidate ecology's role in coevolutionary associations between mites and their bee hosts. Evolution; International Journal of Organic Evolution. 61: 1368-79. PMID 17542846 DOI: 10.1111/J.1558-5646.2007.00119.X |
0.356 |
|
| 2007 |
Carstens BC, Knowles LL. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers. Systematic Biology. 56: 400-11. PMID 17520504 DOI: 10.1080/10635150701405560 |
0.486 |
|
| 2007 |
Knowles LL, Carstens BC, Keat ML. Coupling genetic and ecological-niche models to examine how past population distributions contribute to divergence. Current Biology : Cb. 17: 940-6. PMID 17475496 DOI: 10.1016/J.Cub.2007.04.033 |
0.397 |
|
| 2007 |
Onealt E, Connallon T, Knowles LL. Conflict between direct and indirect benefits of female choice in desert Drosophila. Biology Letters. 3: 29-32. PMID 17443958 DOI: 10.1098/Rsbl.2006.0565 |
0.641 |
|
| 2007 |
Knowles LL, Carstens BC. Estimating a geographically explicit model of population divergence. Evolution; International Journal of Organic Evolution. 61: 477-93. PMID 17348914 DOI: 10.1111/J.1558-5646.2007.00043.X |
0.434 |
|
| 2007 |
Carstens BC, Knowles LL. Shifting distributions and speciation: species divergence during rapid climate change. Molecular Ecology. 16: 619-27. PMID 17257117 DOI: 10.1111/J.1365-294X.2006.03167.X |
0.522 |
|
| 2006 |
Connallon T, Knowles LL. Evidence for overdominant selection maintaining X-linked fitness variation in Drosophila melanogaster. Evolution; International Journal of Organic Evolution. 60: 1445-53. PMID 16929661 DOI: 10.1554/06-119.1 |
0.659 |
|
| 2006 |
Maddison WP, Knowles LL. Inferring phylogeny despite incomplete lineage sorting. Systematic Biology. 55: 21-30. PMID 16507521 DOI: 10.1080/10635150500354928 |
0.461 |
|
| 2005 |
Knowles LL, Richards CL. Importance of genetic drift during Pleistocene divergence as revealed by analyses of genomic variation. Molecular Ecology. 14: 4023-32. PMID 16262856 DOI: 10.1111/J.1365-294X.2005.02711.X |
0.564 |
|
| 2005 |
Connallon T, Knowles LL. Intergenomic conflict revealed by patterns of sex-biased gene expression. Trends in Genetics : Tig. 21: 495-9. PMID 16039005 DOI: 10.1016/J.Tig.2005.07.006 |
0.641 |
|
| 2004 |
Knowles LL, Hernandez BB, Markow TA. Exploring the consequences of postmating-prezygotic interactions between the sexes. Proceedings. Biological Sciences / the Royal Society. 271: S357-9. PMID 15504017 DOI: 10.1098/Rsbl.2004.0192 |
0.324 |
|
| 2004 |
Knowles LL. The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology. 17: 1-10. PMID 15000642 DOI: 10.1046/j.1420-9101.2003.00644.x |
0.399 |
|
| 2002 |
Knowles LL, Maddison WP. Statistical phylogeography. Molecular Ecology. 11: 2623-35. PMID 12453245 DOI: 10.1046/j.1365-294X.2002.01637.x |
0.313 |
|
| 2001 |
Knowles LL. An evolutionary slant on species-area curves. Trends in Ecology & Evolution. 16: 174-175. PMID 11245935 |
0.371 |
|
| 2001 |
Knowles LL. Genealogical portraits of speciation in montane grasshoppers (genus Melanoplus) from the sky islands of the Rocky Mountains. Proceedings. Biological Sciences / the Royal Society. 268: 319-24. PMID 11217904 DOI: 10.1098/rspb.2000.1364 |
0.489 |
|
| 1999 |
Knowles LL, Futuyma DJ, Eanes WF, Rannala B. INSIGHT INTO SPECIATION FROM HISTORICAL DEMOGRAPHY IN THE PHYTOPHAGOUS BEETLE GENUS OPHRAELLA. Evolution; International Journal of Organic Evolution. 53: 1846-1856. PMID 28565438 DOI: 10.1111/j.1558-5646.1999.tb04567.x |
0.628 |
|
| 1999 |
Knowles LL, Levy A, McNellis JM, Greene KP, Futuyma DJ. TESTS OF INBREEDING EFFECTS ON HOST-SHIFT POTENTIAL IN THE PHYTOPHAGOUS BEETLE OPHRAELLA COMMUNA. Evolution; International Journal of Organic Evolution. 53: 561-567. PMID 28565413 DOI: 10.1111/j.1558-5646.1999.tb03791.x |
0.556 |
|
| 1996 |
Meyer A, Knowles LL, Verheyen E. Widespread geographical distribution of mitochondrial haplotypes in rock-dwelling cichlid fishes from Lake Tanganyika. Molecular Ecology. 5: 341-50. PMID 8688956 DOI: 10.1111/J.1365-294X.1996.Tb00325.X |
0.37 |
|
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