Andrew Charles Baker, Ph.D. - Publications

Affiliations: 
Marine Biology and Fisheries University of Miami, Coral Gables, FL 

80 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Starko S, Fifer JE, Claar DC, Davies SW, Cunning R, Baker AC, Baum JK. Marine heatwaves threaten cryptic coral diversity and erode associations among coevolving partners. Science Advances. 9: eadf0954. PMID 37566650 DOI: 10.1126/sciadv.adf0954  0.745
2023 Davies SW, Gamache MH, Howe-Kerr LI, Kriefall NG, Baker AC, Banaszak AT, Bay LK, Bellantuono AJ, Bhattacharya D, Chan CX, Claar DC, Coffroth MA, Cunning R, Davy SK, Del Campo J, et al. Building consensus around the assessment and interpretation of Symbiodiniaceae diversity. Peerj. 11: e15023. PMID 37151292 DOI: 10.7717/peerj.15023  0.792
2023 Palacio-Castro AM, Smith TB, Brandtneris V, Snyder GA, van Hooidonk R, Maté JL, Manzello D, Glynn PW, Fong P, Baker AC. Increased dominance of heat-tolerant symbionts creates resilient coral reefs in near-term ocean warming. Proceedings of the National Academy of Sciences of the United States of America. 120: e2202388120. PMID 36780524 DOI: 10.1073/pnas.2202388120  0.809
2021 Rodriguez-Casariego JA, Cunning R, Baker AC, Eirin-Lopez JM. Symbiont shuffling induces differential DNA methylation responses to thermal stress in the coral Montastraea cavernosa. Molecular Ecology. PMID 34689363 DOI: 10.1111/mec.16246  0.705
2021 Cunning R, Parker KE, Johnson-Sapp K, Karp RF, Wen AD, Williamson OM, Bartels E, D'Alessandro M, Gilliam DS, Hanson G, Levy J, Lirman D, Maxwell K, Million WC, Moulding AL, ... ... Baker AC, et al. Census of heat tolerance among Florida's threatened staghorn corals finds resilient individuals throughout existing nursery populations. Proceedings. Biological Sciences. 288: 20211613. PMID 34666521 DOI: 10.1098/rspb.2021.1613  0.778
2020 Claar DC, Starko S, Tietjen KL, Epstein HE, Cunning R, Cobb KM, Baker AC, Gates RD, Baum JK. Dynamic symbioses reveal pathways to coral survival through prolonged heatwaves. Nature Communications. 11: 6097. PMID 33293528 DOI: 10.1038/s41467-020-19169-y  0.711
2020 Drury C, Pérez Portela R, Serrano XM, Oleksiak M, Baker AC. Fine-scale structure among mesophotic populations of the great star coral revealed by SNP genotyping. Ecology and Evolution. 10: 6009-6019. PMID 32607208 DOI: 10.1002/Ece3.6340  0.799
2020 Cunning R, Baker AC. Thermotolerant coral symbionts modulate heat stress-responsive genes in their hosts. Molecular Ecology. PMID 32585772 DOI: 10.1111/Mec.15526  0.751
2019 McIlroy SE, Cunning R, Baker AC, Coffroth MA. Competition and succession among coral endosymbionts. Ecology and Evolution. 9: 12767-12778. PMID 31788212 DOI: 10.1002/Ece3.5749  0.82
2019 Cunning R, Silverstein RN, Barnes BB, Baker AC. Extensive coral mortality and critical habitat loss following dredging and their association with remotely-sensed sediment plumes. Marine Pollution Bulletin. 145: 185-199. PMID 31590775 DOI: 10.1016/J.Marpolbul.2019.05.027  0.782
2019 Baums IB, Baker AC, Davies SW, Grottoli AG, Kenkel CD, Kitchen SA, Kuffner IB, LaJeunesse TC, Matz MV, Miller MW, Parkinson JE, Shantz AA. Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic. Ecological Applications : a Publication of the Ecological Society of America. PMID 31332879 DOI: 10.1002/Eap.1978  0.677
2019 Chaput R, Paris CB, Smith SG, Baker AC. Reef fish larvae visually discriminate coral diversity during settlement Bulletin of Marine Science. 95: 449-458. DOI: 10.5343/Bms.2018.0063  0.429
2019 Edmunds P, Adam T, Baker A, Doo S, Glynn P, Manzello D, Silbiger N, Smith T, Fong P. Why more comparative approaches are required in time-series analyses of coral reef ecosystems Marine Ecology Progress Series. 608: 297-306. DOI: 10.3354/Meps12805  0.71
2019 Parkinson JE, Baker AC, Baums IB, Davies SW, Grottoli AG, Kitchen SA, Matz MV, Miller MW, Shantz AA, Kenkel CD. Molecular tools for coral reef restoration: Beyond biomarker discovery Conservation Letters. 13. DOI: 10.1111/Conl.12687  0.599
2018 Cunning R, Bay RA, Gillette P, Baker AC, Traylor-Knowles N. Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution. Scientific Reports. 8: 16134. PMID 30382153 DOI: 10.1038/S41598-018-34459-8  0.702
2018 Glynn PW, Feingold JS, Baker A, Banks S, Baums IB, Cole J, Colgan MW, Fong P, Glynn PJ, Keith I, Manzello D, Riegl B, Ruttenberg BI, Smith TB, Vera-Zambrano M. State of corals and coral reefs of the Galápagos Islands (Ecuador): Past, present and future. Marine Pollution Bulletin. 133: 717-733. PMID 30041369 DOI: 10.1016/J.Marpolbul.2018.06.002  0.812
2018 Langdon C, Albright R, Baker AC, Jones P. Two threatened Caribbean coral species have contrasting responses to combined temperature and acidification stress Limnology and Oceanography. 63: 2450-2464. DOI: 10.1002/Lno.10952  0.377
2017 Silverstein RN, Cunning R, Baker AC. Tenacious D: Symbiodinium in clade D remain in reef corals at both high and low temperature extremes despite impairment. The Journal of Experimental Biology. PMID 28108671 DOI: 10.1242/Jeb.148239  0.796
2017 Towle EK, Palacio-Castro AM, Baker AC, Langdon C. Source location and food availability determine the growth response of Orbicella faveolata to climate change stressors Regional Studies in Marine Science. 10: 107-115. DOI: 10.1016/J.Rsma.2017.01.007  0.398
2017 Serrano XM, Miller MW, Hendee JC, Jensen BA, Gapayao JZ, Pasparakis C, Grosell M, Baker AC. Effects of thermal stress and nitrate enrichment on the larval performance of two Caribbean reef corals Coral Reefs. 37: 173-182. DOI: 10.1007/S00338-017-1645-Y  0.814
2017 Cunning R, Silverstein RN, Baker AC. Symbiont shuffling linked to differential photochemical dynamics of Symbiodinium in three Caribbean reef corals Coral Reefs. 37: 145-152. DOI: 10.1007/S00338-017-1640-3  0.803
2017 de Souza JN, Nunes FLD, Zilberberg C, Sanchez JA, Migotto AE, Hoeksema BW, Serrano XM, Baker AC, Lindner A. Contrasting patterns of connectivity among endemic and widespread fire coral species (Millepora spp.) in the tropical Southwestern Atlantic Coral Reefs. 36: 701-716. DOI: 10.1007/S00338-017-1562-0  0.813
2016 Louis YD, Bhagooli R, Kenkel CD, Baker AC, Dyall SD. Gene expression biomarkers of heat stress in scleractinian corals: Promises and limitations. Comparative Biochemistry and Physiology. Toxicology & Pharmacology : Cbp. PMID 27585119 DOI: 10.1016/J.Cbpc.2016.08.007  0.34
2016 Okazaki RR, Towle EK, van Hooidonk R, Mor C, Winter RN, Piggot AM, Cunning R, Baker AC, Klaus JS, Swart PK, Langdon C. Species-specific responses to climate change and community composition determine future calcification rates of Florida Keys reefs. Global Change Biology. PMID 27561209 DOI: 10.1111/Gcb.13481  0.75
2016 Wirshing HH, Baker AC. On the difficulty of recognizing distinct Symbiodinium species in mixed communities of algal symbionts. Molecular Ecology. PMID 27265255 DOI: 10.1111/Mec.13676  0.77
2016 Serrano XM, Baums IB, Smith TB, Jones RJ, Shearer TL, Baker AC. Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides. Scientific Reports. 6: 21619. PMID 26899614 DOI: 10.1038/Srep21619  0.784
2016 Towle EK, Baker AC, Langdon C. Preconditioning to high CO2 exacerbates the response of the Caribbean branching coral Porites porites to high temperature stress Marine Ecology Progress Series. 546: 75-84. DOI: 10.3354/Meps11655  0.329
2015 Cunning R, Vaughan N, Gillette P, Capo TR, Matté JL, Baker AC. Dynamic regulation of partner abundance mediates response of reef coral symbioses to environmental change. Ecology. 96: 1411-20. PMID 26236853 DOI: 10.1890/14-0449.1  0.746
2015 Wirshing HH, Baker AC. Molecular and Morphological Species Boundaries in the Gorgonian Octocoral Genus Pterogorgia (Octocorallia: Gorgoniidae). Plos One. 10: e0133517. PMID 26196389 DOI: 10.1371/Journal.Pone.0133517  0.769
2015 Cunning R, Silverstein RN, Baker AC. Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26041354 DOI: 10.1098/Rspb.2014.1725  0.812
2015 Silverstein RN, Cunning R, Baker AC. Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals. Global Change Biology. 21: 236-49. PMID 25099991 DOI: 10.1111/Gcb.12706  0.799
2015 Aswani S, Mumby PJ, Baker AC, Christie P, McCook LJ, Steneck RS, Richmond RH. Scientific frontiers in the management of coral reefs Frontiers in Marine Science. 2. DOI: 10.3389/Fmars.2015.00050  0.325
2015 Starger CJ, Erdmann MVN, Toha AHA, Baker AC, Barber PH. Strong genetic structure among coral populations within a conservation priority region, the Bird's Head Seascape (Papua, Indonesia) Frontiers of Biogeography. 7. DOI: 10.21425/F5Fbg22326  0.805
2015 Cunning R, Vaughan N, Gillette P, Capo TR, Mate JL, Baker AC, Morgan SG. Dynamic regulation of partner abundance mediates response of reef coral symbioses to environmental change Ecology. 96: 1411-1420. DOI: 10.1890/14-0449.1.sm  0.683
2015 Mcclanahan TR, Starger CJ, Baker AC. Decadal changes in common reef coral populations and their associations with algal symbionts (Symbiodinium spp.) Marine Ecology. 36: 1215-1229. DOI: 10.1111/Maec.12225  0.817
2015 Cunning R, Gillette P, Capo T, Galvez K, Baker AC. Growth tradeoffs associated with thermotolerant symbionts in the coral Pocillopora damicornis are lost in warmer oceans Coral Reefs. 34: 155-160. DOI: 10.1007/S00338-014-1216-4  0.734
2014 Baker AC. Climate change: many ways to beat the heat for reef corals. Current Biology : Cb. 24: R1166-8. PMID 25514009 DOI: 10.1016/J.Cub.2014.11.014  0.374
2014 Lirman D, Schopmeyer S, Galvan V, Drury C, Baker AC, Baums IB. Growth dynamics of the threatened Caribbean staghorn coral Acropora cervicornis: influence of host genotype, symbiont identity, colony size, and environmental setting. Plos One. 9: e107253. PMID 25268812 DOI: 10.1371/Journal.Pone.0107253  0.678
2014 Cunning R, Baker AC. Not just who, but how many: the importance of partner abundance in reef coral symbioses. Frontiers in Microbiology. 5: 400. PMID 25136339 DOI: 10.3389/Fmicb.2014.00400  0.759
2014 Serrano X, Baums IB, O'Reilly K, Smith TB, Jones RJ, Shearer TL, Nunes FL, Baker AC. Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shallow depths. Molecular Ecology. 23: 4226-40. PMID 25039722 DOI: 10.1111/Mec.12861  0.796
2014 Zwart MC, Baker A, McGowan PJ, Whittingham MJ. The use of automated bioacoustic recorders to replace human wildlife surveys: an example using nightjars. Plos One. 9: e102770. PMID 25029035 DOI: 10.1371/Journal.Pone.0102770  0.301
2014 Wirshing HH, Baker AC. Molecular evolution of calcification genes in morphologically similar but phylogenetically unrelated scleractinian corals. Molecular Phylogenetics and Evolution. 77: 281-95. PMID 24780747 DOI: 10.1016/J.Ympev.2014.04.015  0.759
2014 Rodolfo-Metalpa R, Hoogenboom MO, Rottier C, Ramos-Esplá A, Baker AC, Fine M, Ferrier-Pagès C. Thermally tolerant corals have limited capacity to acclimatize to future warming. Global Change Biology. 20: 3036-49. PMID 24616144 DOI: 10.1111/Gcb.12571  0.415
2013 Wirshing HH, Feldheim KA, Baker AC. Vectored dispersal of Symbiodinium by larvae of a Caribbean gorgonian octocoral. Molecular Ecology. 22: 4413-32. PMID 23980762 DOI: 10.1111/Mec.12405  0.774
2013 Feary DA, Burt JA, Bauman AG, Al Hazeem S, Abdel-Moati MA, Al-Khalifa KA, Anderson DM, Amos C, Baker A, Bartholomew A, Bento R, Cavalcante GH, Chen CA, Coles SL, Dab K, et al. Critical research needs for identifying future changes in Gulf coral reef ecosystems. Marine Pollution Bulletin. 72: 406-16. PMID 23643407 DOI: 10.1016/J.Marpolbul.2013.02.038  0.351
2013 Keshavmurthy S, Yang SY, Alamaru A, Chuang YY, Pichon M, Obura D, Fontana S, De Palmas S, Stefani F, Benzoni F, MacDonald A, Noreen AM, Chen C, Wallace CC, Pillay RM, ... ... Baker AC, et al. DNA barcoding reveals the coral "laboratory-rat", Stylophora pistillata encompasses multiple identities. Scientific Reports. 3: 1520. PMID 23519209 DOI: 10.1038/Srep01520  0.448
2013 Hume B, D'Angelo C, Burt J, Baker AC, Riegl B, Wiedenmann J. Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance. Marine Pollution Bulletin. 72: 313-22. PMID 23352079 DOI: 10.1016/J.Marpolbul.2012.11.032  0.377
2013 Baker AC, McClanahan TR, Starger CJ, Boonstra RK. Long-term monitoring of algal symbiont communities in corals reveals stability is taxon dependent and driven by site-specific thermal regime Marine Ecology Progress Series. 479: 85-97. DOI: 10.3354/Meps10102  0.813
2013 Cunning R, Baker AC. Excess algal symbionts increase the susceptibility of reef corals to bleaching Nature Climate Change. 3: 259-262. DOI: 10.1038/Nclimate1711  0.734
2013 Cunning R, Glynn PW, Baker AC. Flexible associations between Pocillopora corals and Symbiodinium limit utility of symbiosis ecology in defining species Coral Reefs. 32: 795-801. DOI: 10.1007/S00338-013-1036-Y  0.814
2012 McClanahan TR, Donner SD, Maynard JA, MacNeil MA, Graham NA, Maina J, Baker AC, Alemu I JB, Beger M, Campbell SJ, Darling ES, Eakin CM, Heron SF, Jupiter SD, Lundquist CJ, et al. Prioritizing key resilience indicators to support coral reef management in a changing climate. Plos One. 7: e42884. PMID 22952618 DOI: 10.1371/Journal.Pone.0042884  0.573
2012 Stat M, Baker AC, Bourne DG, Correa AM, Forsman Z, Huggett MJ, Pochon X, Skillings D, Toonen RJ, van Oppen MJ, Gates RD. Molecular delineation of species in the coral holobiont. Advances in Marine Biology. 63: 1-65. PMID 22877610 DOI: 10.1016/B978-0-12-394282-1.00001-6  0.76
2012 Meron D, Rodolfo-Metalpa R, Cunning R, Baker AC, Fine M, Banin E. Changes in coral microbial communities in response to a natural pH gradient. The Isme Journal. 6: 1775-85. PMID 22437157 DOI: 10.1038/Ismej.2012.19  0.721
2012 Silverstein RN, Correa AM, Baker AC. Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change. Proceedings. Biological Sciences / the Royal Society. 279: 2609-18. PMID 22367985 DOI: 10.1098/Rspb.2012.0055  0.826
2012 DeBoer TS, Baker AC, Erdmann MV, Ambariyanto, Jones PR, Barber PH. Patterns of Symbiodinium distribution in three giant clam species across the biodiverse Bird's Head region of Indonesia Marine Ecology Progress Series. 444: 117-132. DOI: 10.3354/Meps09413  0.61
2011 Bo M, Baker AC, Gaino E, Wirshing HH, Scoccia F, Bavestrello G. First description of algal mutualistic endosymbiosis in a black coral (Anthozoa: Antipatharia) Marine Ecology Progress Series. 435: 1-11. DOI: 10.3354/Meps09228  0.78
2011 Silverstein RN, Correa AMS, LaJeunesse TC, Baker AC. Novel algal symbiont (Symbiodinium spp.) diversity in reef corals of Western Australia Marine Ecology Progress Series. 422: 63-75. DOI: 10.3354/Meps08934  0.768
2011 Correa AMS, Baker AC. Disaster taxa in microbially mediated metazoans: How endosymbionts and environmental catastrophes influence the adaptive capacity of reef corals Global Change Biology. 17: 68-75. DOI: 10.1111/J.1365-2486.2010.02242.X  0.473
2010 Bielmyer GK, Grosell M, Bhagooli R, Baker AC, Langdon C, Gillette P, Capo TR. Differential effects of copper on three species of scleractinian corals and their algal symbionts (Symbiodinium spp.). Aquatic Toxicology (Amsterdam, Netherlands). 97: 125-33. PMID 20089320 DOI: 10.1016/J.Aquatox.2009.12.021  0.379
2010 Starger CJ, Barber PH, Ambariyanto, Baker AC. The recovery of coral genetic diversity in the Sunda Strait following the 1883 eruption of Krakatau Coral Reefs. 29: 547-565. DOI: 10.1007/S00338-010-0609-2  0.81
2009 Correa AMS, Brandt ME, Smith TB, Thornhill DJ, Baker AC. Symbiodinium associations with diseased and healthy scleractinian corals Coral Reefs. 28: 437-448. DOI: 10.1007/S00338-008-0464-6  0.557
2009 Correa AMS, Baker AC. Understanding diversity in coral-algal symbiosis: A cluster-based approach to interpreting fine-scale genetic variation in the genus Symbiodinium Coral Reefs. 28: 81-93. DOI: 10.1007/S00338-008-0456-6  0.408
2009 Correa AMS, McDonald MD, Baker AC. Development of clade-specific Symbiodinium primers for quantitative PCR (qPCR) and their application to detecting clade D symbionts in Caribbean corals Marine Biology. 156: 2403-2411. DOI: 10.1007/S00227-009-1263-5  0.39
2009 Oppen MJHv, Baker AC, Coffroth MA, Willis BL. Bleaching Resistance and the Role of Algal Endosymbionts Ecological Studies. 83-102. DOI: 10.1007/978-3-540-69775-6_6  0.455
2008 Starger CJ, Yeoh SS, Dai CF, Baker AC, Desalle R. Ten polymorphic STR loci in the cosmopolitan reef coral, Pocillopora damicornis. Molecular Ecology Resources. 8: 619-21. PMID 21585850 DOI: 10.1111/J.1471-8286.2007.02017.X  0.796
2008 Smith LW, Wirshing HH, Baker AC, Birkeland C. Environmental versus genetic influences on growth rates of the corals Pocillopora eydouxi and Porites lobata (Anthozoa: Scleractinia) Pacific Science. 62: 57-69. DOI: 10.2984/1534-6188(2008)62[57:Evgiog]2.0.Co;2  0.751
2008 Baker AC, Glynn PW, Riegl B. Climate change and coral reef bleaching: An ecological assessment of long-term impacts, recovery trends and future outlook Estuarine, Coastal and Shelf Science. 80: 435-471. DOI: 10.1016/J.Ecss.2008.09.003  0.727
2007 Baker AC, Romanski AM. Multiple symbiotic partnerships are common in scleractinian corals, but not in octocorals: Comment on Goulet (2006) Marine Ecology Progress Series. 335: 237-242. DOI: 10.3354/Meps335237  0.497
2007 Pochon X, Garcia-Cuetos L, Baker AC, Castella E, Pawlowski J. One-year survey of a single Micronesian reef reveals extraordinarily rich diversity of Symbiodinium types in soritid foraminifera Coral Reefs. 26: 867-882. DOI: 10.1007/S00338-007-0279-X  0.415
2005 Naeem S, Baker AC. Ecology: paradise sustained. Nature. 433: 370-1. PMID 15674276 DOI: 10.1038/433370A  0.517
2005 McClanahan TR, Baker AC, Ateweberhan M, Maina J, Moothien-Pillay KR. Refining coral bleaching experiments and models through reiterative field studies Marine Ecology Progress Series. 305: 301-303. DOI: 10.3354/Meps305301  0.439
2005 McClanahan TR, Maina J, Moothien-Pillay R, Baker AC. Effects of geography, taxa, water flow, and temperature variation on coral bleaching intensity in Mauritius Marine Ecology Progress Series. 298: 131-142. DOI: 10.3354/Meps298131  0.579
2004 Baker AC, Starger CJ, McClanahan TR, Glynn PW. Coral reefs: corals' adaptive response to climate change. Nature. 430: 741. PMID 15306799 DOI: 10.1038/430741A  0.803
2003 McClanahan TR, Sala E, Stickels PA, Cokos BA, Baker AC, Starger CJ, Jones IV SH. Interaction between nutrients and herbivory in controlling algal communities and coral condition on Glover's Reef, Belize Marine Ecology Progress Series. 261: 135-147. DOI: 10.3354/Meps261135  0.792
2003 Baker AC. Flexibility and Specificity in Coral-Algal Symbiosis: Diversity, Ecology, and Biogeography of Symbiodinium Annual Review of Ecology, Evolution, and Systematics. 34: 661-689. DOI: 10.1146/Annurev.Ecolsys.34.011802.132417  0.471
2001 Baker AC. Reef corals bleach to survive change. Nature. 411: 765-6. PMID 11459046 DOI: 10.1038/35081151  0.414
2001 Lirman D, Glynn PW, Baker AC, Morales GEL. Combined effects of three sequential storms on the huatulco coral reef tract, mexico Bulletin of Marine Science. 69: 267-278.  0.6
2001 Glynn PW, Maté JL, Baker AC, Calderón MO. Coral bleaching and mortality in Panama and Ecuador during the 1997-1998 El Niño-Southern Oscillation event: Spatial/temporal patterns and comparisons with the 1982-1983 event Bulletin of Marine Science. 69: 79-109.  0.567
1998 Glynn PW, Lirman D, Baker AC, Morales GEL. First documented hurricane strikes on eastern Pacific coral reefs reveal only slight damage Coral Reefs. 17: 368. DOI: 10.1007/S003380050140  0.641
1997 Rowan R, Knowlton N, Baker A, Jara J. Landscape ecology of algal symbionts creates variation in episodes of coral bleaching. Nature. 388: 265-9. PMID 9230434 DOI: 10.1038/40843  0.76
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