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Ching-Tai Chen - Publications

Affiliations: 
Bioinformatics Program Academia Sinica, Taipei, Taipei City, Taiwan 
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Choong WK, Chen CT, Wang JH, Sung TY. HPDM: in silico human proteome digestion map with proteolytic peptide analysis and graphical visualizations. Journal of Proteome Research. PMID 31429573 DOI: 10.1021/Acs.Jproteome.9B00350  0.322
2019 Chen CT, Ko CL, Choong WK, Wang JH, Hsu WL, Sung TY. WinProphet: a user-friendly pipeline management system for proteomics data analysis based on Trans-Proteomic Pipeline. Analytical Chemistry. PMID 31305071 DOI: 10.1021/Acs.Analchem.9B01556  0.318
2017 Chang HY, Chen CT, Ko CL, Chen YJ, Chen YJ, Hsu WL, Juo CG, Sung TY. iTop-Q: an intelligent tool for top-down proteomics quantitation us-ing DYAMOND algorithm. Analytical Chemistry. PMID 29165996 DOI: 10.1021/Acs.Analchem.7B02343  0.301
2016 Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, ... ... Chen CT, et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biology. 17: 184. PMID 27604469 DOI: 10.1186/S13059-016-1037-6  0.351
2016 Lih TM, Choong WK, Chen CC, Cheng CW, Lin HN, Chen CT, Chang HY, Hsu WL, Sung TY. MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification. Nucleic Acids Research. PMID 27084943 DOI: 10.1093/Nar/Gkw254  0.332
2015 Choong WK, Chang HY, Chen CT, Tsai CF, Hsu WL, Chen YJ, Sung TY. Informatics view on the challenges of identifying missing proteins from shotgun proteomics. Journal of Proteome Research. PMID 26549055 DOI: 10.1021/Acs.Jproteome.5B00482  0.349
2012 Tsai KC, Jian JW, Yang EW, Hsu PC, Peng HP, Chen CT, Chen JB, Chang JY, Hsu WL, Yang AS. Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms. Plos One. 7: e40846. PMID 22848404 DOI: 10.1371/Journal.Pone.0040846  0.343
2012 Chen CT, Peng HP, Jian JW, Tsai KC, Chang JY, Yang EW, Chen JB, Ho SY, Hsu WL, Yang AS. Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces. Plos One. 7: e37706. PMID 22701576 DOI: 10.1371/Journal.Pone.0037706  0.362
2009 Lin HN, Chen CT, Sung TY, Ho SY, Hsu WL. Protein subcellular localization prediction of eukaryotes using a knowledge-based approach. Bmc Bioinformatics. 10: S8. PMID 19958518 DOI: 10.1186/1471-2105-10-S15-S8  0.346
2006 Chen CT, Lin HN, Sung TY, Hsu WL. HYPLOSP: a knowledge-based approach to protein local structure prediction. Journal of Bioinformatics and Computational Biology. 4: 1287-307. PMID 17245815 DOI: 10.1142/S0219720006002466  0.308
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