Senjie Lin - Publications

Marine Sciences University of Connecticut, Storrs, CT, United States 
Molecular Biology, Microbiology Biology, Ecology Biology, Biochemistry

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lin S, Yu L, Zhang H. Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in . Microorganisms. 7. PMID 30987028 DOI: 10.3390/microorganisms7040096  0.32
2018 Hou Y, Ji N, Zhang H, Shi X, Han H, Lin S. Genome size-dependent pcna gene copy number in dinoflagellates and molecular evidence of retroposition as a major evolutionary mechanism. Journal of Phycology. PMID 30468510 DOI: 10.1111/jpy.12815  0.32
2018 Jing X, Lin S, Zhang H, Koerting C, Yu Z. Correction: Utilization of urea and expression profiles of related genes in the dinoflagellate Prorocentrum donghaiense. Plos One. 13: e0191521. PMID 29338050 DOI: 10.1371/journal.pone.0191521  0.32
2017 Brawley SH, Blouin NA, Ficko-Blean E, Wheeler GL, Lohr M, Goodson HV, Jenkins JW, Blaby-Haas CE, Helliwell KE, Chan CX, Marriage TN, Bhattacharya D, Klein AS, Badis Y, Brodie J, ... ... Lin S, et al. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proceedings of the National Academy of Sciences of the United States of America. PMID 28716924 DOI: 10.1073/pnas.1703088114  0.32
2017 Cui Y, Zhang H, Lin S. Enhancement of Non-photochemical Quenching as an Adaptive Strategy under Phosphorus Deprivation in the Dinoflagellate Karlodinium veneficum. Frontiers in Microbiology. 8: 404. PMID 28360892 DOI: 10.3389/fmicb.2017.00404  0.32
2016 Gómez F, Qiu D, Dodge JD, Lopes RM, Lin S. Morphological and molecular characterization of Ptychodiscus noctiluca revealed the polyphyletic nature of the order Ptychodiscales (Dinophyceae). Journal of Phycology. PMID 27288215 DOI: 10.1111/jpy.12438  0.88
2016 Wang L, Lin X, Goes JI, Lin S. Phylogenetic Analyses of Three Genes of Pedinomonas noctilucae, the Green Endosymbiont of the Marine Dinoflagellate Noctiluca scintillans, Reveal its Affiliation to the Order Marsupiomonadales (Chlorophyta, Pedinophyceae) under the Reinstated Name Protoeuglena noctilucae. Protist. 167: 205-216. PMID 27033730 DOI: 10.1016/j.protis.2016.02.005  0.88
2016 Lin S, Litaker RW, Sunda WG. Phosphorus physiological ecology and molecular mechanisms in marine phytoplankton. Journal of Phycology. 52: 10-36. PMID 26987085 DOI: 10.1111/jpy.12365  0.88
2016 Rodriguez IB, Lin S, Ho J, Ho TY. Effects of Trace Metal Concentrations on the Growth of the Coral Endosymbiont Symbiodinium kawagutii. Frontiers in Microbiology. 7: 82. PMID 26903964 DOI: 10.3389/fmicb.2016.00082  0.88
2015 Yang F, Xu D, Zhuang Y, Yi X, Huang Y, Chen H, Lin S, Campbell DA, Sturm NR, Liu G, Zhang H. Spliced leader RNA trans-splicing discovered in copepods. Scientific Reports. 5: 17411. PMID 26621068 DOI: 10.1038/srep17411  0.88
2015 Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, et al. The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis. Science (New York, N.Y.). 350: 691-4. PMID 26542574 DOI: 10.1126/science.aad0408  0.88
2015 Ji N, Li L, Lin L, Lin S. Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae). Plos One. 10: e0132183. PMID 26133173 DOI: 10.1371/journal.pone.0132183  0.88
2015 Gómez F, Qiu D, Lopes RM, Lin S. Fukuyoa paulensis gen. et sp. nov., a new genus for the globular species of the dinoflagellate Gambierdiscus (Dinophyceae). Plos One. 10: e0119676. PMID 25831082 DOI: 10.1371/journal.pone.0119676  0.88
2014 Wang L, Zhuang Y, Zhang H, Lin X, Lin S. DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species. Harmful Algae. 31: 100-113. PMID 28040099 DOI: 10.1016/j.hal.2013.10.013  0.32
2014 Guo Z, Zhang H, Lin S. Light-promoted rhodopsin expression and starvation survival in the marine dinoflagellate Oxyrrhis marina. Plos One. 9: e114941. PMID 25506945 DOI: 10.1371/journal.pone.0114941  0.32
2014 Hu S, Guo Z, Li T, Carpenter EJ, Liu S, Lin S. Detecting in situ copepod diet diversity using molecular technique: development of a copepod/symbiotic ciliate-excluding eukaryote-inclusive PCR protocol. Plos One. 9: e103528. PMID 25058323 DOI: 10.1371/journal.pone.0103528  0.88
2014 Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, ... ... Lin S, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. Plos Biology. 12: e1001889. PMID 24959919 DOI: 10.1371/journal.pbio.1001889  0.88
2014 Mungpakdee S, Shinzato C, Takeuchi T, Kawashima T, Koyanagi R, Hisata K, Tanaka M, Goto H, Fujie M, Lin S, Satoh N, Shoguchi E. Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biology and Evolution. 6: 1408-22. PMID 24881086 DOI: 10.1093/gbe/evu109  0.88
2013 Guo Z, Zhang H, Liu S, Lin S. Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions. Microorganisms. 1: 33-57. PMID 27694763 DOI: 10.3390/microorganisms1010033  0.32
2013 Zhuang Y, Zhang H, Lin S. Polyadenylation of 18S rRNA in algae(1). Journal of Phycology. 49: 570-579. PMID 27007045 DOI: 10.1111/jpy.12068  0.32
2013 Zhang H, Campbell DA, Sturm NR, Rosenblad MA, Dungan CF, Lin S. Signal recognition particle RNA in dinoflagellates and the Perkinsid Perkinsus marinus. Protist. 164: 748-61. PMID 23994724 DOI: 10.1016/j.protis.2013.07.004  0.32
2013 Qiu D, Huang L, Liu S, Zhang H, Lin S. Apical groove type and molecular phylogeny suggests reclassification of Cochlodinium geminatum as Polykrikos geminatum. Plos One. 8: e71346. PMID 23990946 DOI: 10.1371/journal.pone.0071346  0.32
2013 Shi X, Zhang H, Lin S. Tandem repeats, high copy number and remarkable diel expression rhythm of form II RuBisCO in Prorocentrum donghaiense (Dinophyceae). Plos One. 8: e71232. PMID 23976999 DOI: 10.1371/journal.pone.0071232  0.32
2013 Zhang H, Zhuang Y, Gill J, Lin S. Proof that dinoflagellate spliced leader (DinoSL) is a useful hook for fishing dinoflagellate transcripts from mixed microbial samples: Symbiodinium kawagutii as a case study. Protist. 164: 510-27. PMID 23773861 DOI: 10.1016/j.protis.2013.04.002  0.32
2013 Castillo-Medina RE, Islas-Flores T, Thomé PE, Iglesias-Prieto R, Lin S, Zhang H, Villanueva MA. The PsbO homolog from Symbiodinium kawagutii (Dinophyceae) characterized using biochemical and molecular methods. Photosynthesis Research. 115: 167-78. PMID 23708979 DOI: 10.1007/s11120-013-9856-8  0.88
2013 Kuo RC, Zhang H, Zhuang Y, Hannick L, Lin S. Transcriptomic study reveals widespread spliced leader trans-splicing, short 5'-UTRs and potential complex carbon fixation mechanisms in the euglenoid Alga Eutreptiella sp. Plos One. 8: e60826. PMID 23585853 DOI: 10.1371/journal.pone.0060826  0.88
2013 Kuo RC, Lin S. Ectobiotic and endobiotic bacteria associated with Eutreptiella sp. isolated from Long Island Sound. Protist. 164: 60-74. PMID 23107230 DOI: 10.1016/j.protis.2012.08.004  0.88
2013 Bergman B, Sandh G, Lin S, Larsson J, Carpenter EJ. Trichodesmium--a widespread marine cyanobacterium with unusual nitrogen fixation properties. Fems Microbiology Reviews. 37: 286-302. PMID 22928644 DOI: 10.1111/j.1574-6976.2012.00352.x  0.88
2012 Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, W Stiller J, et al. Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism. Journal of Phycology. 48: 1328-1342. PMID 27009986 DOI: 10.1111/j.1529-8817.2012.01229.x  0.32
2012 Stiller JW, Perry J, Rymarquis LA, Accerbi M, Green PJ, Prochnik S, Lindquist E, Chan CX, Yarish C, Lin S, Zhuang Y, Blouin NA, Brawley SH. MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1). Journal of Phycology. 48: 883-96. PMID 27008999 DOI: 10.1111/j.1529-8817.2012.01138.x  0.32
2012 Guo Z, Liu S, Hu S, Li T, Huang Y, Liu G, Zhang H, Lin S. Prevalent ciliate symbiosis on copepods: high genetic diversity and wide distribution detected using small subunit ribosomal RNA gene. Plos One. 7: e44847. PMID 23024768 DOI: 10.1371/journal.pone.0044847  0.32
2012 Ndu U, Mason RP, Zhang H, Lin S, Visscher PT. Effect of inorganic and organic ligands on the bioavailability of methylmercury as determined by using a mer-lux bioreporter. Applied and Environmental Microbiology. 78: 7276-82. PMID 22865079 DOI: 10.1128/AEM.00362-12  0.32
2012 Lin X, Zhang H, Cui Y, Lin S. High sequence variability, diverse subcellular localizations, and ecological implications of alkaline phosphatase in dinoflagellates and other eukaryotic phytoplankton. Frontiers in Microbiology. 3: 235. PMID 22783243 DOI: 10.3389/fmicb.2012.00235  0.32
2012 Chan CX, Zäuner S, Wheeler G, Grossman AR, Prochnik SE, Blouin NA, Zhuang Y, Benning C, Berg GM, Yarish C, Eriksen RL, Klein AS, Lin S, Levine I, Brawley SH, et al. Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems. Plant Physiology. 158: 2001-12. PMID 22337920 DOI: 10.1104/pp.112.193896  0.88
2011 Lin X, Zhang H, Huang B, Lin S. Alkaline Phosphatase Gene Sequence And Transcriptional Regulation By Phosphate Limitation In Amphidinium Carterae (Dinophyceae)(1). Journal of Phycology. 47: 1110-1120. PMID 27020193 DOI: 10.1111/j.1529-8817.2011.01038.x  0.32
2011 Zhang H, Campbell DA, Sturm NR, Dungan CF, Lin S. Spliced leader RNAs, mitochondrial gene frameshifts and multi-protein phylogeny expand support for the genus Perkinsus as a unique group of alveolates. Plos One. 6: e19933. PMID 21629701 DOI: 10.1371/journal.pone.0019933  0.32
2011 Zhang H, Dungan CF, Lin S. Introns, alternative splicing, spliced leader trans-splicing and differential expression of pcna and cyclin in Perkinsus marinus. Protist. 162: 154-67. PMID 20650682 DOI: 10.1016/j.protis.2010.03.003  0.32
2010 Lin S, Zhang H, Zhuang Y, Tran B, Gill J. Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America. 107: 20033-8. PMID 21041634 DOI: 10.1073/pnas.1007246107  0.32
2010 Hou Y, Zhang H, Miranda L, Lin S. Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene. Plos One. 5: e9545. PMID 20221433 DOI: 10.1371/journal.pone.0009545  0.32
2009 Zhang H, Campbell DA, Sturm NR, Lin S. Dinoflagellate spliced leader RNA genes display a variety of sequences and genomic arrangements. Molecular Biology and Evolution. 26: 1757-71. PMID 19387009 DOI: 10.1093/molbev/msp083  0.32
2009 Zhang H, Lin S. Retrieval of missing spliced leader in dinoflagellates. Plos One. 4: e4129. PMID 19122814 DOI: 10.1371/journal.pone.0004129  0.32
2009 Lin S, Zhang H, Hou Y, Zhuang Y, Miranda L. High-level diversity of dinoflagellates in the natural environment, revealed by assessment of mitochondrial cox1 and cob genes for dinoflagellate DNA barcoding. Applied and Environmental Microbiology. 75: 1279-90. PMID 19114529 DOI: 10.1128/AEM.01578-08  0.32
2008 Zhang H, Bhattacharya D, Maranda L, Lin S. Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis. Applied and Environmental Microbiology. 74: 1546-54. PMID 18165361 DOI: 10.1128/AEM.02103-07  0.88
2008 He P, Xu S, Zhang H, Wen S, Dai Y, Lin S, Yarish C. Bioremediation efficiency in the removal of dissolved inorganic nutrients by the red seaweed, Porphyra yezoensis, cultivated in the open sea. Water Research. 42: 1281-9. PMID 17959220 DOI: 10.1016/j.watres.2007.09.023  0.32
2007 Zhang H, Bhattacharya D, Lin S. A three-gene dinoflagellate phylogeny suggests monophyly of prorocentrales and a basal position for amphidinium and heterocapsa. Journal of Molecular Evolution. 65: 463-74. PMID 17896067 DOI: 10.1007/s00239-007-9038-4  0.32
2007 Zhang H, Hou Y, Miranda L, Campbell DA, Sturm NR, Gaasterland T, Lin S. Spliced leader RNA trans-splicing in dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America. 104: 4618-23. PMID 17360573 DOI: 10.1073/pnas.0700258104  0.88
2006 Lin S, Zhang H, Hou Y, Miranda L, Bhattacharya D. Development of a dinoflagellate-oriented PCR primer set leads to detection of picoplanktonic dinoflagellates from Long Island Sound. Applied and Environmental Microbiology. 72: 5626-30. PMID 16885319 DOI: 10.1128/AEM.00586-06  0.32
2006 Zhang H, Hou Y, Lin S. Isolation and characterization of proliferating cell nuclear antigen from the dinoflagellate Pfiesteria piscicida. The Journal of Eukaryotic Microbiology. 53: 142-50. PMID 16579817 DOI: 10.1111/j.1550-7408.2005.00085.x  0.32
2005 Zhang H, Lin S. Mitochondrial cytochrome b mRNA editing in dinoflagellates: possible ecological and evolutionary associations? The Journal of Eukaryotic Microbiology. 52: 538-45. PMID 16313447 DOI: 10.1111/j.1550-7408.2005.00060.x  0.32
2005 Zhang H, Lin S. Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment. Applied and Environmental Microbiology. 71: 7053-63. PMID 16269741 DOI: 10.1128/AEM.71.11.7053-7063.2005  0.32
2003 Lin S, Zhang H. Mitogen-activated protein kinase in Pfiesteria piscicida and its growth rate-related expression. Applied and Environmental Microbiology. 69: 343-9. PMID 12514014  0.32
2002 Lin S, Zhang H, Spencer DF, Norman JE, Gray MW. Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates. Journal of Molecular Biology. 320: 727-39. PMID 12095251 DOI: 10.1016/S0022-2836(02)00468-0  0.88
2002 Zhang H, Lin S. Detection and quantification of Pfiesteria piscicida by using the mitochondrial cytochrome b gene. Applied and Environmental Microbiology. 68: 989-94. PMID 11823251  0.32
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