| Year |
Citation |
Score |
| 2024 |
Baker NR, Zhalnina K, Yuan M, Herman D, Ceja-Navarro JA, Sasse J, Jordan JS, Bowen BP, Wu L, Fossum C, Chew A, Fu Y, Saha M, Zhou J, Pett-Ridge J, ... ... Firestone MK, et al. Nutrient and moisture limitations reveal keystone metabolites linking rhizosphere metabolomes and microbiomes. Proceedings of the National Academy of Sciences of the United States of America. 121: e2303439121. PMID 39093948 DOI: 10.1073/pnas.2303439121 |
0.752 |
|
| 2024 |
Hallberg ZF, Nicolas AM, Alvarez-Aponte ZI, Mok KC, Sieradzki ET, Pett-Ridge J, Banfield JF, Carlson HK, Firestone MK, Taga ME. Soil microbial community response to corrinoids is shaped by a natural reservoir of vitamin B12. The Isme Journal. PMID 38832716 DOI: 10.1093/ismejo/wrae094 |
0.748 |
|
| 2024 |
Chuckran PF, Estera-Molina K, Huntemann M, Foster B, Roux S, Mukherjee S, Hajek P, Reddy TBK, Daum C, Chen I-MA, Pennacchio C, Eloe-Fadrosh EA, Dijkstra P, Firestone MK, Blazewicz SJ, et al. Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology Resource Announcements. e0032224. PMID 38771040 DOI: 10.1128/mra.00322-24 |
0.866 |
|
| 2024 |
Qiu Y, Zhang Y, Zhang K, Xu X, Zhao Y, Bai T, Zhao Y, Wang H, Sheng X, Bloszies S, Gillespie CJ, He T, Wang Y, Chen H, Guo L, ... ... Firestone MK, et al. Intermediate soil acidification induces highest nitrous oxide emissions. Nature Communications. 15: 2695. PMID 38538640 DOI: 10.1038/s41467-024-46931-3 |
0.5 |
|
| 2024 |
Hallberg ZF, Nicolas AM, Alvarez-Aponte ZI, Mok KC, Sieradzki ET, Pett-Ridge J, Banfield JF, Carlson HK, Firestone MK, Taga ME. Vitamin B variants structure soil microbial communities despite soil's vast reservoir of B. Biorxiv : the Preprint Server For Biology. PMID 38405713 DOI: 10.1101/2024.02.12.580003 |
0.758 |
|
| 2024 |
Kakouridis A, Yuan M, Nuccio EE, Hagen JA, Fossum CA, Moore ML, Estera-Molina KY, Nico PS, Weber PK, Pett-Ridge J, Firestone MK. Arbuscular mycorrhiza convey significant plant carbon to a diverse hyphosphere microbial food web and mineral-associated organic matter. The New Phytologist. PMID 38358052 DOI: 10.1111/nph.19560 |
0.721 |
|
| 2024 |
Tao X, Yang Z, Feng J, Jian S, Yang Y, Bates CT, Wang G, Guo X, Ning D, Kempher ML, Liu XJA, Ouyang Y, Han S, Wu L, Zeng Y, ... ... Firestone MK, et al. Experimental warming accelerates positive soil priming in a temperate grassland ecosystem. Nature Communications. 15: 1178. PMID 38331994 DOI: 10.1038/s41467-024-45277-0 |
0.759 |
|
| 2023 |
Santos-Medellín C, Blazewicz SJ, Pett-Ridge J, Firestone MK, Emerson JB. Viral but not bacterial community successional patterns reflect extreme turnover shortly after rewetting dry soils. Nature Ecology & Evolution. 7: 1809-1822. PMID 37770548 DOI: 10.1038/s41559-023-02207-5 |
0.855 |
|
| 2023 |
Sieradzki ET, Nuccio EE, Pett-Ridge J, Firestone MK. Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development. Msystems. 8: e0031523. PMID 37754554 DOI: 10.1128/msystems.00315-23 |
0.708 |
|
| 2023 |
Nicolas AM, Sieradzki ET, Pett-Ridge J, Banfield JF, Taga ME, Firestone MK, Blazewicz SJ. A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil. Nature Communications. 14: 5835. PMID 37730729 DOI: 10.1038/s41467-023-40835-4 |
0.86 |
|
| 2023 |
Sieradzki ET, Nuccio EE, Pett-Ridge J, Firestone MK. Correction to: Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass. The Isme Journal. PMID 37258655 DOI: 10.1038/s41396-023-01441-w |
0.677 |
|
| 2023 |
Sieradzki ET, Nuccio EE, Pett-Ridge J, Firestone MK. Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass. The Isme Journal. PMID 37059820 DOI: 10.1038/s41396-023-01402-3 |
0.669 |
|
| 2022 |
Nuccio EE, Blazewicz SJ, Lafler M, Campbell AN, Kakouridis A, Kimbrel JA, Wollard J, Vyshenska D, Riley R, Tomatsu A, Hestrin R, Malmstrom RR, Firestone M, Pett-Ridge J. HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome. 10: 199. PMID 36434737 DOI: 10.1186/s40168-022-01391-z |
0.793 |
|
| 2022 |
Santos-Medellín C, Estera-Molina K, Yuan M, Pett-Ridge J, Firestone MK, Emerson JB. Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands. Proceedings of the National Academy of Sciences of the United States of America. 119: e2209132119. PMID 36322723 DOI: 10.1073/pnas.2209132119 |
0.717 |
|
| 2022 |
Greenlon A, Sieradzki E, Zablocki O, Koch BJ, Foley MM, Kimbrel JA, Hungate BA, Blazewicz SJ, Nuccio EE, Sun CL, Chew A, Mancilla CJ, Sullivan MB, Firestone M, Pett-Ridge J, et al. Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems. Msystems. e0041722. PMID 36300946 DOI: 10.1128/msystems.00417-22 |
0.862 |
|
| 2022 |
Hestrin R, Kan M, Lafler M, Wollard J, Kimbrel JA, Ray P, Blazewicz SJ, Stuart R, Craven K, Firestone M, Nuccio EE, Pett-Ridge J. Plant-associated fungi support bacterial resilience following water limitation. The Isme Journal. PMID 36085516 DOI: 10.1038/s41396-022-01308-6 |
0.843 |
|
| 2022 |
Kakouridis A, Hagen JA, Kan MP, Mambelli S, Feldman LJ, Herman DJ, Weber PK, Pett-Ridge J, Firestone MK. Routes to Roots: Direct Evidence of Water Transport by Arbuscular Mycorrhizal Fungi to Host Plants. The New Phytologist. PMID 35633108 DOI: 10.1111/nph.18281 |
0.537 |
|
| 2022 |
Hao Z, Wang Y, Ding N, Saha MC, Scheible WR, Craven K, Udvardi M, Nico PS, Firestone MK, Brodie EL. Spectroscopic analysis reveals that soil phosphorus availability and plant allocation strategies impact feedstock quality of nutrient-limited switchgrass. Communications Biology. 5: 227. PMID 35277578 DOI: 10.1038/s42003-022-03157-7 |
0.364 |
|
| 2022 |
Sokol NW, Slessarev E, Marschmann GL, Nicolas A, Blazewicz SJ, Brodie EL, Firestone MK, Foley MM, Hestrin R, Hungate BA, Koch BJ, Stone BW, Sullivan MB, Zablocki O, Pett-Ridge J. Life and death in the soil microbiome: how ecological processes influence biogeochemistry. Nature Reviews. Microbiology. PMID 35228712 DOI: 10.1038/s41579-022-00695-z |
0.851 |
|
| 2022 |
Xiao N, Zhou A, Kempher ML, Zhou BY, Shi ZJ, Yuan M, Guo X, Wu L, Ning D, Van Nostrand J, Firestone MK, Zhou J. Disentangling direct from indirect relationships in association networks. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34992138 DOI: 10.1073/pnas.2109995119 |
0.366 |
|
| 2021 |
Nuccio EE, Nguyen NH, Nunes da Rocha U, Mayali X, Bougoure J, Weber PK, Brodie E, Firestone M, Pett-Ridge J. Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil. Isme Communications. 1: 72. PMID 36765158 DOI: 10.1038/s43705-021-00059-3 |
0.771 |
|
| 2021 |
Neurath RA, Pett-Ridge J, Chu-Jacoby I, Herman D, Whitman T, Nico PS, Lipton AS, Kyle J, Tfaily MM, Thompson A, Firestone MK. Root Carbon Interaction with Soil Minerals Is Dynamic, Leaving a Legacy of Microbially Derived Residues. Environmental Science & Technology. PMID 34558892 DOI: 10.1021/acs.est.1c00300 |
0.734 |
|
| 2021 |
Starr EP, Shi S, Blazewicz SJ, Koch BJ, Probst AJ, Hungate BA, Pett-Ridge J, Firestone MK, Banfield JF. Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil. Msphere. e0008521. PMID 34468166 DOI: 10.1128/mSphere.00085-21 |
0.835 |
|
| 2021 |
Nicolas AM, Jaffe AL, Nuccio EE, Taga ME, Firestone MK, Banfield JF. Soil Candidate Phyla Radiation Bacteria Encode Components of Aerobic Metabolism and Co-occur with Nanoarchaea in the Rare Biosphere of Rhizosphere Grassland Communities. Msystems. e0120520. PMID 34402646 DOI: 10.1128/mSystems.01205-20 |
0.585 |
|
| 2021 |
Lee S, Sieradzki ET, Nicolas AM, Walker RL, Firestone MK, Hazard C, Nicol GW. Methane-derived carbon flows into host-virus networks at different trophic levels in soil. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34349022 DOI: 10.1073/pnas.2105124118 |
0.46 |
|
| 2021 |
Bates CT, Escalas A, Kuang J, Hale L, Wang Y, Herman D, Nuccio EE, Wan X, Bhattacharyya A, Fu Y, Tian R, Wang G, Ning D, Yang Y, Wu L, ... ... Firestone M, et al. Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption. The Isme Journal. PMID 34211103 DOI: 10.1038/s41396-021-00916-y |
0.809 |
|
| 2021 |
Ceja-Navarro JA, Wang Y, Ning D, Arellano A, Ramanculova L, Yuan MM, Byer A, Craven KD, Saha MC, Brodie EL, Pett-Ridge J, Firestone MK. Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop. Microbiome. 9: 96. PMID 33910643 DOI: 10.1186/s40168-021-01042-9 |
0.656 |
|
| 2021 |
Hungate BA, Marks JC, Power ME, Schwartz E, van Groenigen KJ, Blazewicz SJ, Chuckran P, Dijkstra P, Finley BK, Firestone MK, Foley M, Greenlon A, Hayer M, Hofmockel KS, Koch BJ, et al. The Functional Significance of Bacterial Predators. Mbio. 12. PMID 33906922 DOI: 10.1128/mBio.00466-21 |
0.76 |
|
| 2021 |
Yuan MM, Kakouridis A, Starr E, Nguyen N, Shi S, Pett-Ridge J, Nuccio E, Zhou J, Firestone M. Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches. Mbio. 12. PMID 33879589 DOI: 10.1128/mBio.03509-20 |
0.795 |
|
| 2021 |
Guzman A, Montes M, Hutchins L, DeLaCerda G, Yang P, Kakouridis A, Dahlquist-Willard R, Firestone M, Bowles T, Kremen C. Crop diversity enriches arbuscular mycorrhizal fungal communities in an intensive agricultural landscape. The New Phytologist. PMID 33638170 DOI: 10.1111/nph.17306 |
0.471 |
|
| 2020 |
Xu C, Zhang K, Zhu W, Xiao J, Zhu C, Zhang N, Yu F, Li S, Zhu C, Tu Q, Chen X, Zhu J, Hu S, Koide RT, Firestone MK, et al. Large losses of ammonium-nitrogen from a rice ecosystem under elevated CO. Science Advances. 6. PMID 33067230 DOI: 10.1126/sciadv.abb7433 |
0.392 |
|
| 2020 |
Ning D, Yuan M, Wu L, Zhang Y, Guo X, Zhou X, Yang Y, Arkin AP, Firestone MK, Zhou J. A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming. Nature Communications. 11: 4717. PMID 32948774 DOI: 10.1038/S41467-020-18560-Z |
0.48 |
|
| 2020 |
Sieradzki ET, Koch BJ, Greenlon A, Sachdeva R, Malmstrom RR, Mau RL, Blazewicz SJ, Firestone MK, Hofmockel KS, Schwartz E, Hungate BA, Pett-Ridge J. Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design. Msystems. 5. PMID 32694124 DOI: 10.1128/mSystems.00151-20 |
0.763 |
|
| 2020 |
Blazewicz SJ, Hungate BA, Koch BJ, Nuccio EE, Morrissey E, Brodie EL, Schwartz E, Pett-Ridge J, Firestone MK. Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil. The Isme Journal. PMID 32203117 DOI: 10.1038/S41396-020-0617-3 |
0.811 |
|
| 2020 |
Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J, Tringe SG, Malmstrom RR, Woyke T, Banfield JF, Firestone MK, Pett-Ridge J. Niche differentiation is spatially and temporally regulated in the rhizosphere. The Isme Journal. PMID 31953507 DOI: 10.1038/S41396-019-0582-X |
0.788 |
|
| 2020 |
Sher Y, Baker NR, Herman D, Fossum C, Hale L, Zhang X, Nuccio E, Saha M, Zhou J, Pett-Ridge J, Firestone M. Corrigendum to “Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential” [Soil Biology and Biochemistry 143 (2020) 107741] Soil Biology & Biochemistry. 148: 107907. DOI: 10.1016/J.Soilbio.2020.107907 |
0.795 |
|
| 2020 |
Sher Y, Baker NR, Herman D, Fossum C, Hale L, Zhang X, Nuccio E, Saha M, Zhou J, Pett-Ridge J, Firestone M. Microbial extracellular polysaccharide production and aggregate stability controlled by switchgrass (Panicum virgatum) root biomass and soil water potential Soil Biology and Biochemistry. 143: 107742. DOI: 10.1016/J.Soilbio.2020.107742 |
0.815 |
|
| 2019 |
Starr EP, Nuccio EE, Pett-Ridge J, Banfield JF, Firestone MK. Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil. Proceedings of the National Academy of Sciences of the United States of America. PMID 31772013 DOI: 10.1073/Pnas.1908291116 |
0.717 |
|
| 2019 |
Escalas A, Hale L, Voordeckers JW, Yang Y, Firestone MK, Alvarez-Cohen L, Zhou J. Microbial functional diversity: From concepts to applications. Ecology and Evolution. 9: 12000-12016. PMID 31695904 DOI: 10.1002/Ece3.5670 |
0.413 |
|
| 2018 |
Whitman T, Neurath R, Perera A, Chu-Jacoby I, Ning D, Zhou J, Nico P, Pett-Ridge J, Firestone M. Microbial community assembly differs across minerals in a rhizosphere microcosm. Environmental Microbiology. PMID 30047192 DOI: 10.1111/1462-2920.14366 |
0.821 |
|
| 2018 |
Starr EP, Shi S, Blazewicz SJ, Probst AJ, Herman DJ, Firestone MK, Banfield JF. Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon. Microbiome. 6: 122. PMID 29970182 DOI: 10.1186/S40168-018-0499-Z |
0.77 |
|
| 2018 |
Gao J, Sasse J, Lewald KM, Zhalnina K, Cornmesser LT, Duncombe TA, Yoshikuni Y, Vogel JP, Firestone MK, Northen TR. Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions. Journal of Visualized Experiments : Jove. PMID 29708529 DOI: 10.3791/57170 |
0.313 |
|
| 2018 |
Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology. PMID 29556109 DOI: 10.1038/S41564-018-0129-3 |
0.355 |
|
| 2018 |
Shi S, Herman DJ, He Z, Pett-Ridge J, Wu L, Zhou J, Firestone MK. Plant roots alter microbial functional genes supporting root litter decomposition Soil Biology and Biochemistry. 127: 90-99. DOI: 10.1016/J.Soilbio.2018.09.013 |
0.768 |
|
| 2017 |
Pett-Ridge J, Firestone MK. Using stable isotopes to explore root-microbe-mineral interactions in soil Rhizosphere. 3: 244-253. DOI: 10.1016/J.Rhisph.2017.04.016 |
0.75 |
|
| 2016 |
Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie EL, Firestone MK. Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. Ecology. 97: 1307-18. PMID 27349106 |
0.78 |
|
| 2016 |
Shi S, Nuccio EE, Shi ZJ, He Z, Zhou J, Firestone MK. The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages. Ecology Letters. PMID 27264635 DOI: 10.1111/Ele.12630 |
0.464 |
|
| 2015 |
Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. Mbio. 6. PMID 26242625 DOI: 10.1128/Mbio.00746-15 |
0.81 |
|
| 2015 |
Barnard RL, Osborne CA, Firestone MK. Changing precipitation pattern alters soil microbial community response to wet-up under a Mediterranean-type climate. The Isme Journal. 9: 946-57. PMID 25314319 DOI: 10.1038/ismej.2014.192 |
0.581 |
|
| 2014 |
Blazewicz SJ, Schwartz E, Firestone MK. Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil. Ecology. 95: 1162-72. PMID 25000748 DOI: 10.1890/13-1031.1 |
0.774 |
|
| 2014 |
Zhu B, Gutknecht JLM, Herman DJ, Keck DC, Firestone MK, Cheng W. Rhizosphere priming effects on soil carbon and nitrogen mineralization Soil Biology and Biochemistry. 76: 183-192. DOI: 10.1016/J.Soilbio.2014.04.033 |
0.588 |
|
| 2014 |
Throckmorton HM, Bird JA, Monte N, Doane T, Firestone MK, Horwath WR. The soil matrix increases microbial C stabilization in temperate and tropical forest soils Biogeochemistry. 122: 35-45. DOI: 10.1007/s10533-014-0027-6 |
0.558 |
|
| 2013 |
Blazewicz SJ, Barnard RL, Daly RA, Firestone MK. Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. The Isme Journal. 7: 2061-8. PMID 23823491 DOI: 10.1038/Ismej.2013.102 |
0.699 |
|
| 2013 |
Barnard RL, Osborne CA, Firestone MK. Responses of soil bacterial and fungal communities to extreme desiccation and rewetting. The Isme Journal. 7: 2229-41. PMID 23823489 DOI: 10.1038/ismej.2013.104 |
0.532 |
|
| 2013 |
Pett-Ridge J, Petersen DG, Nuccio E, Firestone MK. Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. Fems Microbiology Ecology. 85: 179-94. PMID 23556538 DOI: 10.1111/1574-6941.12111 |
0.755 |
|
| 2013 |
Placella SA, Firestone MK. Transcriptional response of nitrifying communities to wetting of dry soil. Applied and Environmental Microbiology. 79: 3294-302. PMID 23524666 DOI: 10.1128/AEM.00404-13 |
0.489 |
|
| 2013 |
Nuccio EE, Hodge A, Pett-Ridge J, Herman DJ, Weber PK, Firestone MK. An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition. Environmental Microbiology. 15: 1870-81. PMID 23360621 DOI: 10.1111/1462-2920.12081 |
0.77 |
|
| 2013 |
Shi S, Richardson AE, O'Callaghan M, Firestone M, Condron L. Challenges in Assessing Links Between Root Exudates and the Structure and Function of Soil Microbial Communities Molecular Microbial Ecology of the Rhizosphere. 1: 125-135. DOI: 10.1002/9781118297674.ch11 |
0.552 |
|
| 2012 |
Throckmorton HM, Bird JA, Dane L, Firestone MK, Horwath WR. The source of microbial C has little impact on soil organic matter stabilisation in forest ecosystems. Ecology Letters. 15: 1257-65. PMID 22897121 DOI: 10.1111/J.1461-0248.2012.01848.X |
0.837 |
|
| 2012 |
Placella SA, Brodie EL, Firestone MK. Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proceedings of the National Academy of Sciences of the United States of America. 109: 10931-6. PMID 22715291 DOI: 10.1073/pnas.1204306109 |
0.375 |
|
| 2012 |
DeAngelis KM, Firestone MK. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes. Applied and Environmental Microbiology. 78: 2459-61. PMID 22286992 DOI: 10.1128/Aem.07547-11 |
0.713 |
|
| 2012 |
Petersen DG, Blazewicz SJ, Firestone M, Herman DJ, Turetsky M, Waldrop M. Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska. Environmental Microbiology. 14: 993-1008. PMID 22225623 DOI: 10.1111/J.1462-2920.2011.02679.X |
0.815 |
|
| 2012 |
Herman DJ, Firestone MK, Nuccio E, Hodge A. Interactions between an arbuscular mycorrhizal fungus and a soil microbial community mediating litter decomposition. Fems Microbiology Ecology. 80: 236-47. PMID 22224699 DOI: 10.1111/j.1574-6941.2011.01292.x |
0.457 |
|
| 2012 |
Sudderth EA, St. Clair SB, Placella SA, Swarbreck SM, Castanha C, Herman DJ, Fischer ML, Kleber M, Sudderth EB, Torn MS, Firestone MK, Andersen GL, Ackerly DD. Annual grassland resource pools and fluxes: sensitivity to precipitation and dry periods on two contrasting soils Ecosphere. 3: art70-art70. DOI: 10.1890/Es12-00004.1 |
0.49 |
|
| 2012 |
Blazewicz SJ, Petersen DG, Waldrop MP, Firestone MK. Anaerobic oxidation of methane in tropical and boreal soils: Ecological significance in terrestrial methane cycling Journal of Geophysical Research: Biogeosciences. 117. DOI: 10.1029/2011Jg001864 |
0.822 |
|
| 2011 |
Shi S, Richardson AE, O'Callaghan M, DeAngelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. Effects of selected root exudate components on soil bacterial communities. Fems Microbiology Ecology. 77: 600-10. PMID 21658090 DOI: 10.1111/J.1574-6941.2011.01150.X |
0.822 |
|
| 2011 |
Cusack DF, Silver WL, Torn MS, Burton SD, Firestone MK. Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests. Ecology. 92: 621-32. PMID 21608471 DOI: 10.1890/10-0459.1 |
0.556 |
|
| 2011 |
Bird JA, Herman DJ, Firestone MK. Rhizosphere priming of soil organic matter by bacterial groups in a grassland soil Soil Biology and Biochemistry. 43: 718-725. DOI: 10.1016/j.soilbio.2010.08.010 |
0.564 |
|
| 2010 |
Dubinsky EA, Silver WL, Firestone MK. Tropical forest soil microbial communities couple iron and carbon biogeochemistry. Ecology. 91: 2604-12. PMID 20957955 DOI: 10.1890/09-1365.1 |
0.765 |
|
| 2010 |
DeAngelis KM, Silver WL, Thompson AW, Firestone MK. Microbial communities acclimate to recurring changes in soil redox potential status. Environmental Microbiology. 12: 3137-49. PMID 20629704 DOI: 10.1111/J.1462-2920.2010.02286.X |
0.745 |
|
| 2009 |
DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. Selective progressive response of soil microbial community to wild oat roots. The Isme Journal. 3: 168-78. PMID 19005498 DOI: 10.1038/Ismej.2008.103 |
0.858 |
|
| 2008 |
Templer PH, Silver WL, Pett-Ridge J, M DeAngelis K, Firestone MK. PLANT AND MICROBIAL CONTROLS ON NITROGEN RETENTION AND LOSS IN A HUMID TROPICAL FOREST. Ecology. 89: 3030-3040. PMID 31766805 DOI: 10.1890/07-1631.1 |
0.668 |
|
| 2008 |
DeAngelis KM, Lindow SE, Firestone MK. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. Fems Microbiology Ecology. 66: 197-207. PMID 18721146 DOI: 10.1111/J.1574-6941.2008.00550.X |
0.839 |
|
| 2008 |
Templer PH, Silver WL, Pett-Ridge J, DeAngelis KM, Firestone MK. Plant and microbial controls on nitrogen retention and loss in a humid tropical forest Ecology. 89: 3030-3040. DOI: 10.1890/07-1631.1 |
0.737 |
|
| 2007 |
DeAngelis KM, Firestone MK, Lindow SE. Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities. Applied and Environmental Microbiology. 73: 3724-7. PMID 17400771 DOI: 10.1128/Aem.02187-06 |
0.827 |
|
| 2007 |
Hawkes CV, DeAngelis KM, Firestone MK. Root Interactions with Soil Microbial Communities and Processes The Rhizosphere. 1-29. DOI: 10.1016/B978-012088775-0/50003-3 |
0.793 |
|
| 2006 |
Wallenstein MD, Myrold DD, Firestone M, Voytek M. Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecological Applications : a Publication of the Ecological Society of America. 16: 2143-52. PMID 17205893 DOI: 10.1890/1051-0761(2006)016[2143:Ecodca]2.0.Co;2 |
0.402 |
|
| 2006 |
Waldrop MP, Firestone MK. Response of microbial community composition and function to soil climate change. Microbial Ecology. 52: 716-24. PMID 17061172 DOI: 10.1007/S00248-006-9103-3 |
0.821 |
|
| 2006 |
Waldrop MP, Firestone MK. Seasonal dynamics of microbial community composition and function in oak canopy and open grassland soils. Microbial Ecology. 52: 470-9. PMID 16909344 DOI: 10.1007/S00248-006-9100-6 |
0.805 |
|
| 2006 |
Herman DJ, Johnson KK, Jaeger CH, Schwartz E, Firestone MK. Root influence on nitrogen mineralization and nitrification in avena barbata rhizosphere soil Soil Science Society of America Journal. 70: 1504-1511. DOI: 10.2136/Sssaj2005.0113 |
0.586 |
|
| 2006 |
Hawkes CV, Belnap J, D'Antonio C, Firestone MK. Arbuscular mycorrhizal assemblages in native plant roots change in the presence of invasive exotic grasses Plant and Soil. 281: 369-380. DOI: 10.1007/S11104-005-4826-3 |
0.43 |
|
| 2006 |
Pett-Ridge J, Silver WL, Firestone MK. Redox fluctuations frame microbial community impacts on N-cycling rates in a humid tropical forest soil Biogeochemistry. 81: 95-110. DOI: 10.1007/S10533-006-9032-8 |
0.796 |
|
| 2005 |
Hawkes CV, Wren IF, Herman DJ, Firestone MK. Plant invasion alters nitrogen cycling by modifying the soil nitrifying community. Ecology Letters. 8: 976-985. PMID 34517683 DOI: 10.1111/j.1461-0248.2005.00802.x |
0.604 |
|
| 2005 |
DeAngelis KM, Ji P, Firestone MK, Lindow SE. Two novel bacterial biosensors for detection of nitrate availability in the rhizosphere. Applied and Environmental Microbiology. 71: 8537-47. PMID 16332845 DOI: 10.1128/Aem.71.12.8537-8547.2005 |
0.743 |
|
| 2005 |
Pett-Ridge J, Firestone MK. Redox fluctuation structures microbial communities in a wet tropical soil. Applied and Environmental Microbiology. 71: 6998-7007. PMID 16269735 DOI: 10.1128/Aem.71.11.6998-7007.2005 |
0.764 |
|
| 2005 |
Hawkes CV, Wren IF, Herman DJ, Firestone MK. Plant invasion alters nitrogen cycling by modifying the soil nitrifying community Ecology Letters. 8: 976-985. DOI: 10.1111/J.1461-0248.2005.00802.X |
0.604 |
|
| 2005 |
Balser TC, Firestone MK. Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest Biogeochemistry. 73: 395-415. DOI: 10.1007/S10533-004-0372-Y |
0.868 |
|
| 2004 |
Waldrop MP, Firestone MK. Microbial community utilization of recalcitrant and simple carbon compounds: impact of oak-woodland plant communities. Oecologia. 138: 275-84. PMID 14614618 DOI: 10.1007/S00442-003-1419-9 |
0.808 |
|
| 2004 |
Waldrop MP, Firestone MK. Altered utilization patterns of young and old soil C by microorganisms caused by temperature shifts and N additions Biogeochemistry. 67: 235-248. DOI: 10.1023/B:Biog.0000015321.51462.41 |
0.783 |
|
| 2003 |
Tokunaga TK, Wan J, Firestone MK, Hazen TC, Olson KR, Herman DJ, Sutton SR, Lanzirotti A. In situ reduction of chromium(VI) in heavily contaminated soils through organic carbon amendment. Journal of Environmental Quality. 32: 1641-9. PMID 14535304 DOI: 10.2134/Jeq2003.1641 |
0.48 |
|
| 2003 |
Tokunaga TK, Wan J, Hazen TC, Schwartz E, Firestone MK, Sutton SR, Newville M, Olson KR, Lanzirotti A, Rao W. Distribution of chromium contamination and microbial activity in soil aggregates. Journal of Environmental Quality. 32: 541-9. PMID 12708678 DOI: 10.2134/Jeq2003.5410 |
0.525 |
|
| 2003 |
Belnap J, Hawkes CV, Firestone MK. Boundaries in miniature: Two examples from soil Bioscience. 53: 739-749. DOI: 10.1641/0006-3568(2003)053[0739:Bimtef]2.0.Co;2 |
0.525 |
|
| 2002 |
Balser TC, Kirchner JW, Firestone MK. Methodological variability in microbial community level physiological profiles Soil Science Society of America Journal. 66: 519-523. DOI: 10.2136/Sssaj2002.5190 |
0.859 |
|
| 2001 |
Holden PA, Hersman LE, Firestone MK. Water Content Mediated Microaerophilic Toluene Biodegradation in Arid Vadose Zone Materials. Microbial Ecology. 42: 256-266. PMID 12024251 DOI: 10.1007/s00248-001-0010-3 |
0.653 |
|
| 2001 |
Miya RK, Firestone MK. Enhanced phenanthrene biodegradation in soil by slender oat root exudates and root debris. Journal of Environmental Quality. 30: 1911-8. PMID 11789996 DOI: 10.2134/Jeq2001.1911 |
0.861 |
|
| 2001 |
Tokunaga TK, Wan J, Firestone MK, Hazen TC, Schwartz E, Sutton SR, Newville M. Chromium diffusion and reduction in soil aggregates. Environmental Science & Technology. 35: 3169-74. PMID 11505996 DOI: 10.1021/Es010523M |
0.46 |
|
| 2001 |
Hu S, Chapin FS, Firestone MK, Field CB, Chiariello NR. Nitrogen limitation of microbial decomposition in a grassland under elevated CO2. Nature. 409: 188-91. PMID 11196641 DOI: 10.1038/35051576 |
0.335 |
|
| 2001 |
Silver WL, Herman DJ, Firestone MK. Dissimilatory nitrate reduction to ammonium in upland tropical forest soils Ecology. 82: 2410-2416. DOI: 10.1890/0012-9658(2001)082[2410:Dnrtai]2.0.Co;2 |
0.5 |
|
| 2000 |
Halverson LJ, Jones TM, Firestone MK. Release of intracellular solutes by four soil bacteria exposed to dilution stress Soil Science Society of America Journal. 64: 1630-1637. DOI: 10.2136/Sssaj2000.6451630X |
0.349 |
|
| 2000 |
Miya RK, Firestone MK. Phenanthrene-degrader community dynamics in rhizosphere soil from a common annual grass Journal of Environmental Quality. 29: 584-592. DOI: 10.2134/Jeq2000.00472425002900020029X |
0.869 |
|
| 2000 |
Waldrop MP, Balser TC, Firestone MK. Linking microbial community composition to function in a tropical soil Soil Biology and Biochemistry. 32: 1837-1846. DOI: 10.1016/S0038-0717(00)00157-7 |
0.841 |
|
| 1999 |
Hu S, Firestone MK, Chapin FS. Soil microbial feedbacks to atmospheric CO2 enrichment. Trends in Ecology & Evolution. 14: 433-437. PMID 10511719 DOI: 10.1016/S0169-5347(99)01682-1 |
0.43 |
|
| 1999 |
Jaeger CH, Lindow SE, Miller W, Clark E, Firestone MK. Mapping of sugar and amino acid availability in soil around roots with bacterial sensors of sucrose and tryptophan Applied and Environmental Microbiology. 65: 2685-90. PMID 10347061 DOI: 10.1128/Aem.65.6.2685-2690.1999 |
0.708 |
|
| 1999 |
Pedersen H, Dunkin KA, Firestone MK. The relative importance of autotrophic and heterotrophic nitrification in a conifer forest soil as measured by 15N tracer and pool dilution techniques Biogeochemistry. 44: 135-150. DOI: 10.1023/A:1006059930960 |
0.473 |
|
| 1998 |
Hu S, Firestone MK, Chapin FS. Elevated atmospheric CO2 and soil biota [3] Science. 281: 518. |
0.486 |
|
| 1997 |
Holden PA, Hunt JR, Firestone MK. Toluene diffusion and reaction in unsaturated Pseudomonas putida biofilms. Biotechnology and Bioengineering. 56: 656-70. PMID 18642338 DOI: 10.1002/(Sici)1097-0290(19971220)56:6<656::Aid-Bit9>3.0.Co;2-M |
0.544 |
|
| 1997 |
Holden PA, Halverson LJ, Firestone MK. Water stress effects on toluene biodegradation by Pseudomonas putida. Biodegradation. 8: 143-51. PMID 9396169 DOI: 10.1023/A:1008237819089 |
0.553 |
|
| 1997 |
Holden PA, Firestone MK. Soil microorganisms in soil cleanup: How can we improve our understanding? Journal of Environmental Quality. 26: 32-40. |
0.748 |
|
| 1996 |
Norton JM, Firestone MK. N dynamics in the rhizosphere of Pinus ponderosa seedlings Soil Biology and Biochemistry. 28: 351-362. DOI: 10.1016/0038-0717(95)00155-7 |
0.539 |
|
| 1995 |
Stark JM, Firestone MK. Mechanisms for soil moisture effects on activity of nitrifying bacteria. Applied and Environmental Microbiology. 61: 218-21. PMID 16534906 |
0.497 |
|
| 1995 |
Hunt JR, Holden PA, Firestone MK. Coupling transport and biodegradation of VOCs in surface and subsurface soils. Environmental Health Perspectives. 103: 75-8. PMID 8565916 DOI: 10.1289/Ehp.95103S475 |
0.625 |
|
| 1995 |
Roberson EB, Sarig S, Shennan C, Firestone MK. Nutritional management of microbial polysaccharide production and aggregation in an agricultural soil Soil Science Society of America Journal. 59: 1587-1594. DOI: 10.2136/Sssaj1995.03615995005900060012X |
0.547 |
|
| 1995 |
Stark JM, Firestone MK. Isotopic labeling of soil nitrate pools using nitrogen-15-nitric oxide gas Soil Science Society of America Journal. 59: 844-847. |
0.401 |
|
| 1993 |
Sarig S, Roberson EB, Firestone MK. Microbial activity-soil structure: Response to saline water irrigation Soil Biology and Biochemistry. 25: 693-697. DOI: 10.1016/0038-0717(93)90109-O |
0.468 |
|
| 1993 |
Hart SC, Firestone MK, Paul EA, Smith JL. Flow and fate of soil nitrogen in an annual grassland and a young mixed-conifer forest Soil Biology and Biochemistry. 25: 431-442. DOI: 10.1016/0038-0717(93)90068-M |
0.696 |
|
| 1992 |
Roberson EB, Firestone MK. Relationship between Desiccation and Exopolysaccharide Production in a Soil Pseudomonas sp. Applied and Environmental Microbiology. 58: 1284-91. PMID 16348695 |
0.407 |
|
| 1992 |
Davidson EA, Hart SC, Firestone MK. Internal cycling of nitrate in soils of a mature coniferous forest Ecology. 73: 1148-1156. DOI: 10.2307/1940665 |
0.54 |
|
| 1992 |
Hart SC, Firestone MK, Paul EA. Decomposition and nutrient dynamics of ponderosa pine needles in a Mediterranean-type climate Canadian Journal of Forest Research. 22: 306-314. DOI: 10.1139/X92-040 |
0.515 |
|
| 1992 |
Roberson EB, Firestone MK. Relationship between desiccation and exopolysaccharide production in a soil Pseudomonas sp Applied and Environmental Microbiology. 58: 1284-1291. |
0.474 |
|
| 1991 |
Norton JM, Firestone MK. Metabolic status of bacteria and fungi in the rhizosphere of ponderosa pine seedlings. Applied and Environmental Microbiology. 57: 1161-7. PMID 16348461 DOI: 10.1128/Aem.57.4.1161-1167.1991 |
0.577 |
|
| 1991 |
Davidson EA, Hart SC, Shanks CA, Firestone MK. Measuring gross nitrogen mineralization, immobilization, and nitrification by 15N isotopic pool dilution in intact soil cores Journal of Soil Science. 42: 335-349. DOI: 10.1111/J.1365-2389.1991.Tb00413.X |
0.682 |
|
| 1991 |
McColl JG, Firestone MK. Soil chemical and microbial effects of simulated acid rain on clover and soft chess Water, Air, and Soil Pollution. 60: 301-313. DOI: 10.1007/BF00282629 |
0.476 |
|
| 1991 |
Hart SC, Firestone MK. Forest floor-mineral soil interactions in the internal nitrogen cycle of an old-growth forest Biogeochemistry. 12: 103-127. DOI: 10.1007/Bf00001809 |
0.616 |
|
| 1991 |
Roberson EB, Sarig S, Firestone MK. Cover crop management of polysaccharide-mediated aggregation in an orchard soil Soil Science Society of America Journal. 55: 734-739. |
0.453 |
|
| 1991 |
Rudaz AO, Davidson EA, Firestone MK. Sources of nitrous oxide production following wetting of dry soil Fems Microbiology Letters. 85: 117-124. |
0.442 |
|
| 1990 |
Jackson LE, Strauss RB, Firestone MK, Bartolome JW. Influence of tree canopies on grassland productivity and nitrogen dynamics in deciduous oak savanna Agriculture, Ecosystems and Environment. 32: 89-105. DOI: 10.1016/0167-8809(90)90126-X |
0.497 |
|
| 1990 |
Norton JM, Smith JL, Firestone MK. Carbon flow in the rhizosphere of ponderosa pine seedlings Soil Biology and Biochemistry. 22: 449-455. DOI: 10.1016/0038-0717(90)90177-2 |
0.55 |
|
| 1989 |
Schimel JP, Firestone MK. Nitrogen incorporation and flow through a coniferous forest soil profile Soil Science Society of America Journal. 53: 779-784. DOI: 10.2136/Sssaj1989.03615995005300030025X |
0.689 |
|
| 1989 |
Hart SC, Firestone MK. Evaluation of three insitu soil nitrogen availability assays Canadian Journal of Forest Research. 19: 185-191. DOI: 10.1139/X89-026 |
0.701 |
|
| 1989 |
Davidson EA, Eckert RW, Hart SC, Firestone MK. Direct extraction of microbial biomass nitrogen from forest and grassland soils of california Soil Biology and Biochemistry. 21: 773-778. DOI: 10.1016/0038-0717(89)90169-7 |
0.707 |
|
| 1989 |
Jackson LE, Schimel JP, Firestone MK. Short-term partitioning of ammonium and nitrate between plants and microbes in an annual grassland Soil Biology and Biochemistry. 21: 409-415. DOI: 10.1016/0038-0717(89)90152-1 |
0.66 |
|
| 1989 |
Schimel JP, Jackson LE, Firestone MK. Spatial and temporal effects on plant-microbial competition for inorganic nitrogen in a california annual grassland Soil Biology and Biochemistry. 21: 1059-1066. DOI: 10.1016/0038-0717(89)90044-8 |
0.657 |
|
| 1989 |
Schimel JP, Firestone MK. Inorganic N incorporation by coniferous forest floor material Soil Biology and Biochemistry. 21: 41-46. DOI: 10.1016/0038-0717(89)90008-4 |
0.484 |
|
| 1988 |
Davidson EA, Firestone MK. Measurement of Nitrous Oxide Dissolved in Soil Solution Soil Science Society of America Journal. 52: 1201-1203. DOI: 10.2136/sssaj1988.03615995005200040060x |
0.413 |
|
| 1988 |
Jackson LE, Strauss RB, Firestone MK, Bartolome JW. Plant and soil nitrogen dynamics in California annual grassland Plant and Soil. 110: 9-17. DOI: 10.1007/Bf02143533 |
0.527 |
|
| 1987 |
McColl JG, Firestone MK. Cumulative Effects of Simulated Acid Rain on Soil Chemical and Microbial Characteristics and Conifer Seedling Growth Soil Science Society of America Journal. 51: NP-NP. DOI: 10.2136/sssaj1987.03615995005100030060x |
0.469 |
|
| 1987 |
Kieft TL, soroker E, firestone MK. Microbial biomass response to a rapid increase in water potential when dry soil is wetted Soil Biology and Biochemistry. 19: 119-126. DOI: 10.1016/0038-0717(87)90070-8 |
0.547 |
|
| 1984 |
Schimel JP, Firestone MK, Killham KS. Identification of heterotrophic nitrification in a sierran forest soil. Applied and Environmental Microbiology. 48: 802-6. PMID 16346646 |
0.69 |
|
| 1983 |
Firestone MK, Killham K, McColl JG. Fungal toxicity of mobilized soil aluminum and manganese. Applied and Environmental Microbiology. 46: 758-61. PMID 16346390 |
0.39 |
|
| 1983 |
Killham K, Firestone MK, Mc Coll JG. Acid Rain and Soil Microbial Activity: Effects and Their Mechanisms Journal of Environmental Quality. 12: 133-137. DOI: 10.2134/jeq1983.00472425001200010024x |
0.515 |
|
| 1982 |
Killham K, Firestone MK. Evaluation of accelerated h+ applications in predicting soil chemical and microbial changes due to acid rain Communications in Soil Science and Plant Analysis. 13: 995-1001. DOI: 10.1080/00103628209367328 |
0.48 |
|
| 1980 |
Firestone MK, Firestone RB, Tiedje JM. Nitrous oxide from soil denitrification: factors controlling its biological production. Science (New York, N.Y.). 208: 749-51. PMID 17771133 DOI: 10.1126/Science.208.4445.749 |
0.533 |
|
| 1979 |
Firestone MK, Tiedje JM. Temporal change in nitrous oxide and dinitrogen from denitrification following onset of anaerobiosis. Applied and Environmental Microbiology. 38: 673-9. PMID 16345447 DOI: 10.1128/Aem.38.4.673-679.1979 |
0.382 |
|
| 1979 |
Firestone MK, Firestone RB, Tiedje JM. Nitric oxide as an intermediate in denitrification: evidence from nitrogen-13 isotope exchange. Biochemical and Biophysical Research Communications. 91: 10-6. PMID 518609 DOI: 10.1016/0006-291X(79)90575-8 |
0.356 |
|
| 1979 |
Firestone MK, Smith MS, Firestone RB, Tiedje JM. The Influence of Nitrate, Nitrite, and Oxygen on the Composition of the Gaseous Products of Denitrification in Soil Soil Science Society of America Journal. 43: 1140-1144. DOI: 10.2136/Sssaj1979.03615995004300060016X |
0.603 |
|
| 1979 |
Tiedje JM, Firestone RB, Firestone MK, Betlach MR, Smith MS, Caskey WH. Methods for the Production and Use of Nitrogen-13 In Studies of Denitrification Soil Science Society of America Journal. 43: 709-716. DOI: 10.2136/Sssaj1979.03615995004300040016X |
0.348 |
|
| 1978 |
Firestone MK, Tiedje JM. Pathway of degradation of nitrilotriacetate by a Pseudomonas species. Applied and Environmental Microbiology. 35: 955-61. PMID 655711 DOI: 10.1128/Aem.35.5.955-961.1978 |
0.49 |
|
| 1978 |
Firestone MK, Aust SD, Tiedje JM. A nitrilotriacetic acid monooxygenase with conditional NADH-oxidase activity. Archives of Biochemistry and Biophysics. 190: 617-23. PMID 31137 DOI: 10.1016/0003-9861(78)90318-1 |
0.333 |
|
| 1978 |
Smith MS, Firestone MK, Tiedje JM. The Acetylene Inhibition Method for Short-term Measurement of Soil Denitrification and its Evaluation Using Nitrogen-131 Soil Science Society of America Journal. 42: 611. DOI: 10.2136/Sssaj1978.03615995004200040015X |
0.593 |
|
| 1975 |
Firestone MK, Tiedje JM. Biodegradation of metal-nitrilotriacetate complexes by a Pseudomonas species: mechanism of reaction. Applied Microbiology. 29: 758-64. PMID 1155932 DOI: 10.1128/Aem.29.6.758-764.1975 |
0.382 |
|
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