Marcela Madrid - Publications

Affiliations: 
Carnegie Mellon University, Pittsburgh, PA 
Area:
Mechanical Engineering, Electronics and Electrical Engineering, Condensed Matter Physics

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ribone SR, Schenfeld EM, Madrid M, Pierini AB, Quevedo MA. Evaluation and synthesis of AZT prodrugs with optimized chemical stabilities: experimental and theoretical analyses New Journal of Chemistry. 40: 2383-2392. DOI: 10.1039/C5Nj03002A  0.306
2012 Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Reppireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes. Journal of the American Chemical Society. 134: 9335-42. PMID 22548314 DOI: 10.1021/Ja301677Z  0.34
2011 Ribone SR, Quevedo MA, Madrid M, Briñón MC. Rational approaches for the design of effective human immunodeficiency virus type 1 nonnucleoside reverse transcriptase inhibitors. Journal of Chemical Information and Modeling. 51: 130-8. PMID 21133347 DOI: 10.1021/Ci1001636  0.336
2010 Yeh JI, Shivachev B, Rapireddy S, Crawford MJ, Gil RR, Du S, Madrid M, Ly DH. Crystal structure of chiral gammaPNA with complementary DNA strand: insights into the stability and specificity of recognition and conformational preorganization. Journal of the American Chemical Society. 132: 10717-27. PMID 20681704 DOI: 10.1021/Ja907225D  0.35
2010 He W, Crawford MJ, Rapireddy S, Madrid M, Gil RR, Ly DH, Achim C. The structure of a gamma-modified peptide nucleic acid duplex. Molecular Biosystems. 6: 1619-29. PMID 20386807 DOI: 10.1039/C002254C  0.362
2008 He W, Hatcher E, Balaeff A, Beratan DN, Gil RR, Madrid M, Achim C. Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations. Journal of the American Chemical Society. 130: 13264-73. PMID 18781753 DOI: 10.1021/Ja800652H  0.404
2005 Zhou Z, Madrid M, Evanseck JD, Madura JD. Effect of a bound non-nucleoside RT inhibitor on the dynamics of wild-type and mutant HIV-1 reverse transcriptase. Journal of the American Chemical Society. 127: 17253-60. PMID 16332074 DOI: 10.1021/Ja053973D  0.35
2005 Dilek I, Madrid M, Singh R, Urrea CP, Armitage BA. Effect of PNA backbone modifications on cyanine dye binding to PNA-DNA duplexes investigated by optical spectroscopy and molecular dynamics simulations. Journal of the American Chemical Society. 127: 3339-45. PMID 15755150 DOI: 10.1021/Ja045145A  0.352
2002 Zhou Z, Madrid M, Madura JD. Docking of non-nucleoside inhibitors: neotripterifordin and its derivatives to HIV-1 reverse transcriptase. Proteins. 49: 529-42. PMID 12402361 DOI: 10.1002/Prot.10233  0.342
2001 Madrid M, Lukin JA, Madura JD, Ding J, Arnold E. Molecular dynamics of HIV-1 reverse transcriptase indicates increased flexibility upon DNA binding Proteins: Structure, Function and Genetics. 45: 176-182. PMID 11599020 DOI: 10.1002/Prot.1137  0.359
1999 Madrid M, Jacobo-Molina A, Ding J, Arnold E. Major subdomain rearrangement in HIV-1 reverse transcriptase simulated by molecular dynamics. Proteins. 35: 332-337. PMID 10328268 DOI: 10.1002/(Sici)1097-0134(19990515)35:3<332::Aid-Prot7>3.0.Co;2-R  0.335
1992 Constantine KL, Madrid M, Bányai L, Trexler M, Patthy L, Llinás M. Refined solution structure and ligand-binding properties of PDC-109 domain b. A collagen-binding type II domain Journal of Molecular Biology. 223: 281-298. PMID 1731074 DOI: 10.1016/0022-2836(92)90731-X  0.363
1991 Constantine KL, De Marco A, Madrid M, Brooks CL, Llinás M. The solution conformations of ferrichrome and deferriferrichrome determined by 1H-NMR spectroscopy and computational modeling. Biopolymers. 30: 239-56. PMID 2279065 DOI: 10.1002/Bip.360300303  0.378
1989 Madrid M, Mace JE, Jardetzky O. Consequences of magnetization transfer on the determination of solution structures of proteins Journal of Magnetic Resonance (1969). 83: 267-278. DOI: 10.1016/0022-2364(89)90190-X  0.302
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