☰

Michael D. Daily, Ph.D. - Publications

Affiliations: 
2008 Johns Hopkins University, Baltimore, MD 
Area:
General Biophysics, Biochemistry, Bioinformatics Biology
Tree Info Similar researchers PubMed Report error

13/29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Daily MD, Baer MD, Mundy CJ. Divalent Ion Parameterization Strongly Affects Conformation and Interactions of an Anionic Biomimetic Polymer. The Journal of Physical Chemistry. B. PMID 26882842 DOI: 10.1021/Acs.Jpcb.5B12277  0.321
2015 Kim KW, Smith CA, Daily MD, Cort JR, Davin LB, Lewis NG. Trimeric structure of (+)-pinoresinol-forming dirigent protein at 1.95 Å resolution with three isolated active sites. The Journal of Biological Chemistry. 290: 1308-18. PMID 25411250 DOI: 10.1074/Jbc.M114.611780  0.328
2014 Daily MD, Olsen BN, Schlesinger PH, Ory DS, Baker NA. Improved Coarse-Grained Modeling of Cholesterol-Containing Lipid Bilayers. Journal of Chemical Theory and Computation. 10: 2137-2150. PMID 24910542 DOI: 10.1021/Ct401028G  0.305
2013 Daily MD, Olsen BN, Schlesinger PH, Ory DS, Baker NA. Improved Coarse-Grained Modeling of Cholesterol Activation in Lipid Bilayers Biophysical Journal. 104: 590a-591a. DOI: 10.1016/J.Bpj.2012.11.3281  0.318
2012 Daily MD, Makowski L, Phillips GN, Cui Q. Large-scale motions in the adenylate kinase solution ensemble: coarse-grained simulations and comparison with solution X-ray scattering. Chemical Physics. 396: 84-91. PMID 22711968 DOI: 10.1016/J.Chemphys.2011.08.015  0.356
2011 Daily MD, Phillips GN, Cui Q. Interconversion of functional motions between mesophilic and thermophilic adenylate kinases. Plos Computational Biology. 7: e1002103. PMID 21779157 DOI: 10.1016/J.Bpj.2010.12.1159  0.358
2010 Daily MD, Phillips GN, Cui Q. Many local motions cooperate to produce the adenylate kinase conformational transition. Journal of Molecular Biology. 400: 618-31. PMID 20471396 DOI: 10.1016/J.Jmb.2010.05.015  0.357
2010 Daily MD, Cui Q. The Adenylate Kinase Transition Requires Many Easy Motions, Not a Few Hard Ones Biophysical Journal. 98: 27a. DOI: 10.1016/J.Bpj.2009.12.160  0.337
2009 Demerdash ON, Daily MD, Mitchell JC. Structure-based predictive models for allosteric hot spots. Plos Computational Biology. 5: e1000531. PMID 19816556 DOI: 10.1371/Journal.Pcbi.1000531  0.387
2009 Daily MD, Gray JJ. Allosteric communication occurs via networks of tertiary and quaternary motions in proteins Plos Computational Biology. 5. PMID 19229311 DOI: 10.1371/Journal.Pcbi.1000293  0.523
2008 Daily MD, Upadhyaya TJ, Gray JJ. Contact rearrangements form coupled networks from local motions in allosteric proteins Proteins: Structure, Function and Genetics. 71: 455-466. PMID 17957766 DOI: 10.1002/Prot.21800  0.544
2007 Daily MD, Gray JJ. Local motions in a benchmark of allosteric proteins Proteins: Structure, Function and Genetics. 67: 385-399. PMID 17295319 DOI: 10.1002/Prot.21300  0.522
2005 Daily MD, Masica D, Sivasubramanian A, Somarouthu S, Gray JJ. CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock Proteins: Structure, Function and Genetics. 60: 181-186. PMID 15981262 DOI: 10.1002/Prot.20555  0.462
Low-probability matches (unlikely to be authored by this person)
2013 Daily MD, Yu H, Phillips GN, Cui Q. Allosteric activation transitions in enzymes and biomolecular motors: insights from atomistic and coarse-grained simulations. Topics in Current Chemistry. 337: 139-64. PMID 23468286 DOI: 10.1007/128_2012_409  0.292
2014 Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, et al. Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO. Plos One. 9: e101787. PMID 25010333 DOI: 10.1371/Journal.Pone.0101787  0.291
2003 Huyghues-Despointes BM, Thurlkill RL, Daily MD, Schell D, Briggs JM, Antosiewicz JM, Pace CN, Scholtz JM. pK values of histidine residues in ribonuclease Sa: effect of salt and net charge. Journal of Molecular Biology. 325: 1093-105. PMID 12527310 DOI: 10.1016/S0022-2836(02)01274-3  0.279
2015 Pan W, Daily M, Baker NA. Numerical calculation of protein-ligand binding rates through solution of the Smoluchowski equation using smoothed particle hydrodynamics. Bmc Biophysics. 8: 7. PMID 25995835 DOI: 10.1186/S13628-015-0021-Y  0.267
2016 Grate JW, Mo KF, Daily MD. Triazine-Based Sequence-Defined Polymers with Side-Chain Diversity and Backbone-Backbone Interaction Motifs. Angewandte Chemie (International Ed. in English). 55: 3925-30. PMID 26865312 DOI: 10.1002/Anie.201509864  0.265
2013 Olsen BN, Bielska A, Daily M, Schlesinger P, Baker N, Ory D. The Structural Basis of Cholesterol Activation in Membranes Biophysical Journal. 104: 662a. DOI: 10.1016/J.Bpj.2012.11.3657  0.262
2013 Olsen BN, Bielska AA, Lee T, Daily MD, Covey DF, Schlesinger PH, Baker NA, Ory DS. The structural basis of cholesterol accessibility in membranes. Biophysical Journal. 105: 1838-47. PMID 24138860 DOI: 10.1016/J.Bpj.2013.08.042  0.258
2016 Grate JW, Mo K, Daily MD. Inside Cover: Triazine-Based Sequence-Defined Polymers with Side-Chain Diversity and Backbone-Backbone Interaction Motifs (Angew. Chem. Int. Ed. 12/2016) Angewandte Chemie International Edition. 55: 3832-3832. DOI: 10.1002/Anie.201601680  0.254
2016 Grate JW, Mo K, Daily MD. Innentitelbild: Triazine-Based Sequence-Defined Polymers with Side-Chain Diversity and Backbone-Backbone Interaction Motifs (Angew. Chem. 12/2016) Angewandte Chemie. 128: 3896-3896. DOI: 10.1002/Ange.201601680  0.251
2013 Daily MD, Chun J, Heredia-Langner A, Wei G, Baker NA. Origin of parameter degeneracy and molecular shape relationships in geometric-flow calculations of solvation free energies. The Journal of Chemical Physics. 139: 204108. PMID 24289345 DOI: 10.1063/1.4832900  0.251
2016 Jin H, Jiao F, Daily MD, Chen Y, Yan F, Ding YH, Zhang X, Robertson EJ, Baer MD, Chen CL. Highly stable and self-repairing membrane-mimetic 2D nanomaterials assembled from lipid-like peptoids. Nature Communications. 7: 12252. PMID 27402325 DOI: 10.1038/Ncomms12252  0.233
2016 Alvarez J, Mei X, Daily M, Shah M, Grigorian A, Berger J, Marti F, Gedaly R. Tipping the Scales: Liver Transplant Outcomes of the Super Obese. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. PMID 27311983 DOI: 10.1007/S11605-016-3185-0  0.033
2013 Gedaly R, Guidry P, Davenport D, Daily M, Ronsenau J, Shah M, Cooper MA, Hundley J. Peri-operative challenges and long-term outcomes in liver transplantation for polycystic liver disease. Hpb : the Official Journal of the International Hepato Pancreato Biliary Association. 15: 302-6. PMID 23458516 DOI: 10.1111/j.1477-2574.2012.00579.x  0.027
2015 Coquillard C, Berger J, Daily M, Shah M, Mei X, Marti F, Gedaly R. Combined Liver-Kidney Transplantation for Polycystic Liver and Kidney Disease: analysis from the UNOS dataset. Liver International : Official Journal of the International Association For the Study of the Liver. PMID 26663575 DOI: 10.1111/Liv.13041  0.013
2016 Jackson N, Dugan A, Davenport D, Daily M, Shah M, Berger J, Gedaly R. Risk factors for increased resource utilization and critical care complications in patients undergoing hepaticojejunostomy for biliary injuries. Hpb : the Official Journal of the International Hepato Pancreato Biliary Association. 18: 712-7. PMID 27593587 DOI: 10.1016/j.hpb.2016.07.002  0.012
2016 Ravinuthala A, Mei X, Daily M, Shah M, Castellanos A, Berger J, Gedaly R. Perioperative and long-term outcomes in octogenarians after kidney transplantation: the US perspective
. Clinical Nephrology. PMID 27936521 DOI: 10.5414/CN108988  0.01
Hide low-probability matches.