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Steven Zimmerly - Publications

Affiliations: 
University of Calgary, Calgary, Alberta, Canada 
Area:
Molecular Biology
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Wu L, Gingery M, Abebe M, Arambula D, Czornyj E, Handa S, Khan H, Liu M, Pohlschroder M, Shaw KL, Du A, Guo H, Ghosh P, Miller JF, Zimmerly S. Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey. Nucleic Acids Research. PMID 29186518 DOI: 10.1093/Nar/Gkx1150  0.363
2016 McNeil BA, Semper C, Zimmerly S. Group II introns: versatile ribozymes and retroelements. Wiley Interdisciplinary Reviews. Rna. 7: 341-55. PMID 26876278 DOI: 10.1002/Wrna.1339  0.625
2015 Zimmerly S, Wu L. An Unexplored Diversity of Reverse Transcriptases in Bacteria. Microbiology Spectrum. 3: MDNA3-0058-2014. PMID 26104699 DOI: 10.1128/Microbiolspec.Mdna3-0058-2014  0.512
2015 Zimmerly S, Semper C. Evolution of group II introns Mobile Dna. 6: 7-7. PMID 25960782 DOI: 10.1186/S13100-015-0037-5  0.6
2014 McNeil BA, Zimmerly S. Novel RNA structural features of an alternatively splicing group II intron from Clostridium tetani. Rna (New York, N.Y.). 20: 855-66. PMID 24751650 DOI: 10.1261/Rna.042440.113  0.6
2014 McNeil BA, Simon DM, Zimmerly S. Alternative splicing of a group II intron in a surface layer protein gene in Clostridium tetani. Nucleic Acids Research. 42: 1959-69. PMID 24214997 DOI: 10.1093/Nar/Gkt1053  0.566
2013 Abebe M, Candales MA, Duong A, Hood KS, Li T, Neufeld RA, Shakenov A, Sun R, Wu L, Jarding AM, Semper C, Zimmerly S. A pipeline of programs for collecting and analyzing group II intron retroelement sequences from GenBank. Mobile Dna. 4: 28. PMID 24359548 DOI: 10.1186/1759-8753-4-28  0.614
2012 Wu L, Chai D, Fraser ME, Zimmerly S. Structural variation and uniformity among tetraloop-receptor interactions and other loop-helix interactions in RNA crystal structures. Plos One. 7: e49225. PMID 23152878 DOI: 10.1371/Journal.Pone.0049225  0.375
2012 Candales MA, Duong A, Hood KS, Li T, Neufeld RA, Sun R, McNeil BA, Wu L, Jarding AM, Zimmerly S. Database for bacterial group II introns. Nucleic Acids Research. 40: D187-90. PMID 22080509 DOI: 10.1093/Nar/Gkr1043  0.6
2011 Wang C, Villion M, Semper C, Coros C, Moineau S, Zimmerly S. A reverse transcriptase-related protein mediates phage resistance and polymerizes untemplated DNA in vitro. Nucleic Acids Research. 39: 7620-9. PMID 21676997 DOI: 10.1093/Nar/Gkr397  0.371
2011 Lambowitz AM, Zimmerly S. Group II introns: mobile ribozymes that invade DNA. Cold Spring Harbor Perspectives in Biology. 3: a003616. PMID 20463000 DOI: 10.1101/Cshperspect.A003616  0.601
2009 Simon DM, Kelchner SA, Zimmerly S. A broadscale phylogenetic analysis of group II intron RNAs and intron-encoded reverse transcriptases. Molecular Biology and Evolution. 26: 2795-808. PMID 19713327 DOI: 10.1093/Molbev/Msp193  0.618
2008 Simon DM, Zimmerly S. A diversity of uncharacterized reverse transcriptases in bacteria. Nucleic Acids Research. 36: 7219-29. PMID 19004871 DOI: 10.1093/Nar/Gkn867  0.585
2008 Simon DM, Clarke NA, McNeil BA, Johnson I, Pantuso D, Dai L, Chai D, Zimmerly S. Group II introns in eubacteria and archaea: ORF-less introns and new varieties. Rna (New York, N.Y.). 14: 1704-13. PMID 18676618 DOI: 10.1261/Rna.1056108  0.625
2008 Dai L, Chai D, Gu SQ, Gabel J, Noskov SY, Blocker FJ, Lambowitz AM, Zimmerly S. A three-dimensional model of a group II intron RNA and its interaction with the intron-encoded reverse transcriptase. Molecular Cell. 30: 472-85. PMID 18424209 DOI: 10.1016/J.Molcel.2008.04.001  0.605
2007 Robart AR, Seo W, Zimmerly S. Insertion of group II intron retroelements after intrinsic transcriptional terminators Proceedings of the National Academy of Sciences of the United States of America. 104: 6620-6625. PMID 17420455 DOI: 10.1073/Pnas.0700561104  0.528
2006 Toor N, Robart AR, Christianson J, Zimmerly S. Self-splicing of a group IIC intron: 5' exon recognition and alternative 5' splicing events implicate the stem-loop motif of a transcriptional terminator. Nucleic Acids Research. 34: 6461-71. PMID 17130159 DOI: 10.1093/Nar/Gkl820  0.548
2006 Hausner G, Olson R, Simon D, Johnson I, Sanders ER, Karol KG, McCourt RM, Zimmerly S. Origin and evolution of the chloroplast trnK (matK) intron: a model for evolution of group II intron RNA structures. Molecular Biology and Evolution. 23: 380-91. PMID 16267141 DOI: 10.1093/Molbev/Msj047  0.587
2005 Robart AR, Zimmerly S. Group II intron retroelements: function and diversity Cytogenetic and Genome Research. 110: 589-597. PMID 16093712 DOI: 10.1159/000084992  0.55
2004 Lambowitz AM, Zimmerly S. Mobile group II introns Annual Review of Genetics. 38: 1-35. PMID 15568970 DOI: 10.1146/Annurev.Genet.38.072902.091600  0.655
2004 Doulatov S, Hodes A, Dai L, Mandhana N, Liu M, Deora R, Simons RW, Zimmerly S, Miller JF. Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature. 431: 476-81. PMID 15386016 DOI: 10.1038/Nature02833  0.385
2004 Robart AR, Montgomery NK, Smith KL, Zimmerly S. Principles of 3' splice site selection and alternative splicing for an unusual group II intron from Bacillus anthracis. Rna (New York, N.Y.). 10: 854-62. PMID 15100440 DOI: 10.1261/Rna.5246804  0.447
2003 Dai L, Zimmerly S. ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs. Rna (New York, N.Y.). 9: 14-9. PMID 12554871 DOI: 10.1261/Rna.2126203  0.635
2003 Dai L, Toor N, Olson R, Keeping A, Zimmerly S. Database for mobile group II introns. Nucleic Acids Research. 31: 424-6. PMID 12520040 DOI: 10.1093/Nar/Gkg049  0.602
2002 Toor N, Zimmerly S. Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns. Rna (New York, N.Y.). 8: 1373-7. PMID 12458791 DOI: 10.1017/S1355838202023087  0.616
2002 Dai L, Zimmerly S. The dispersal of five group II introns among natural populations of Escherichia coli. Rna (New York, N.Y.). 8: 1294-307. PMID 12403467 DOI: 10.1017/S1355838202023014  0.581
2002 Dai L, Zimmerly S. Compilation and analysis of group II intron insertions in bacterial genomes: evidence for retroelement behavior. Nucleic Acids Research. 30: 1091-102. PMID 11861899 DOI: 10.1093/Nar/30.5.1091  0.626
2002 Morozova T, Seo W, Zimmerly S. Non-cognate template usage and alternative priming by a group II intron-encoded reverse transcriptase. Journal of Molecular Biology. 315: 951-963. PMID 11827468 DOI: 10.1006/Jmbi.2001.5320  0.539
2001 Toor N, Hausner G, Zimmerly S. Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases Rna. 7: 1142-1152. PMID 11497432 DOI: 10.1017/S1355838201010251  0.607
2001 Zimmerly S, Hausner G, Wu X. Phylogenetic relationships among group II intron ORFs Nucleic Acids Research. 29: 1238-1250. PMID 11222775 DOI: 10.1093/Nar/29.5.1238  0.585
1999 Lambowitz AM, Caprara MG, Zimmerly S, Perlman PS. 18 Group I and Group II Ribozymes as RNPs: Clues to the Past and Guides to the Future Cold Spring Harbor Monograph Archive. 37: 451-485. DOI: 10.1101/087969589.37.451  0.626
1997 Guo H, Zimmerly S, Perlman PS, Lambowitz AM. Group II intron endonucleases use both RNA and protein subunits for recognition of specific sequences in double-stranded DNA Embo Journal. 16: 6835-6848. PMID 9362497 DOI: 10.1093/Emboj/16.22.6835  0.499
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