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Ravinder Singh - Publications

Affiliations: 
University of Colorado, Boulder, Boulder, CO, United States 
Area:
Molecular Biology
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Banerjee H, Singh R. Genomic and cDNA selection-amplification identifies transcriptome-wide binding sites for the Drosophila protein sex-lethal. Plos One. 16: e0250592. PMID 34029324 DOI: 10.1371/journal.pone.0250592  0.406
2019 Singh R. Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins. Journal of Visualized Experiments : Jove. PMID 31449261 DOI: 10.3791/59635  0.534
2018 Singh R. A Novel Saturation Mutagenesis Approach: Single Step Characterization of Regulatory Protein Binding Sites in RNA Using Phosphorothioates. Journal of Visualized Experiments : Jove. PMID 30199036 DOI: 10.3791/57816  0.525
2016 Sridharan V, Heimiller J, Robida MD, Singh R. High Throughput Sequencing Identifies Misregulated Genes in the Drosophila Polypyrimidine Tract-Binding Protein (hephaestus) Mutant Defective in Spermatogenesis. Plos One. 11: e0150768. PMID 26942929 DOI: 10.1371/Journal.Pone.0150768  0.71
2015 Singh R. Bioinformatics Analysis to Identify RNA-Protein Interactions in Oogenesis. Methods in Molecular Biology (Clifton, N.J.). 1328: 231-41. PMID 26324442 DOI: 10.1007/978-1-4939-2851-4_17  0.454
2014 Heimiller J, Sridharan V, Huntley J, Wesley CS, Singh R. Drosophila polypyrimidine tract-binding protein (DmPTB) regulates dorso-ventral patterning genes in embryos. Plos One. 9: e98585. PMID 25014769 DOI: 10.1371/Journal.Pone.0098585  0.768
2011 Hartmann B, Castelo R, Miñana B, Peden E, Blanchette M, Rio DC, Singh R, Valcárcel J. Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. Rna (New York, N.Y.). 17: 453-68. PMID 21233220 DOI: 10.1261/Rna.2460411  0.514
2011 Sridharan V, Heimiller J, Singh R. Genomic mRNA profiling reveals compensatory mechanisms for the requirement of the essential splicing factor U2AF. Molecular and Cellular Biology. 31: 652-661. PMID 21149581 DOI: 10.1128/Mcb.01000-10  0.749
2010 Robida M, Sridharan V, Morgan S, Rao T, Singh R. Drosophila polypyrimidine tract-binding protein is necessary for spermatid individualization. Proceedings of the National Academy of Sciences of the United States of America. 107: 12570-5. PMID 20616016 DOI: 10.1073/Pnas.1007935107  0.777
2009 Shepherd AK, Singh R, Wesley CS. Notch mRNA expression in Drosophila embryos is negatively regulated at the level of mRNA 3' processing. Plos One. 4: e8063. PMID 19956683 DOI: 10.1371/Journal.Pone.0008063  0.416
2008 Banerjee H, Singh R. A simple crosslinking method, CLAMP, to map the sites of RNA-contacting domains within a protein Methods in Molecular Biology (Clifton, N.J.). 488: 181-190. PMID 18982291 DOI: 10.1007/978-1-60327-475-3_12  0.42
2007 Sridharan V, Singh R. A conditional role of U2AF in splicing of introns with unconventional polypyrimidine tracts. Molecular and Cellular Biology. 27: 7334-7344. PMID 17709389 DOI: 10.1128/Mcb.00627-07  0.521
2007 Robida MD, Rahn A, Singh R. Genome-wide identification of alternatively spliced mRNA targets of specific RNA-binding proteins. Plos One. 2: e520. PMID 17565373 DOI: 10.1371/Journal.Pone.0000520  0.769
2006 Gawande B, Robida MD, Rahn A, Singh R. Drosophila Sex-lethal protein mediates polyadenylation switching in the female germline. The Embo Journal. 25: 1263-72. PMID 16511567 DOI: 10.1038/Sj.Emboj.7601022  0.749
2006 Hamady M, Peden E, Knight R, Singh R. Fast-Find: A novel computational approach to analyzing combinatorial motifs Bmc Bioinformatics. 7: 1-10. PMID 16393334 DOI: 10.1186/1471-2105-7-1  0.407
2006 Singh R, Robida MD, Karimpour S. Building Biological Complexity with Limited Genes Current Genomics. 7: 97-114. DOI: 10.2174/138920206777304669  0.687
2005 Singh R, Valcárcel J. Building specificity with nonspecific RNA-binding proteins. Nature Structural & Molecular Biology. 12: 645-653. PMID 16077728 DOI: 10.1038/Nsmb961  0.467
2005 Singh R, Valcárcel J. Erratum: Building specificity with nonspecific RNA-binding proteins Nature Structural & Molecular Biology. 12: 824-824. DOI: 10.1038/Nsmb0905-824B  0.412
2004 Banerjee H, Rahn A, Gawande B, Guth S, Valcárcel J, Singh R. The conserved RNA recognition motif 3 of U2 snRNA auxiliary factor (U2AF65) is essential in vivo but dispensable for activity in vitro Rna. 10: 240-253. PMID 14730023 DOI: 10.1261/Rna.5153204  0.486
2003 Robida MD, Singh R. Drosophila polypyrimidine-tract binding protein (PTB) functions specifically in the male germline. The Embo Journal. 22: 2924-33. PMID 12805208 DOI: 10.1093/Emboj/Cdg301  0.752
2003 Banerjee H, Rahn A, Davis W, Singh R. Sex lethal and U2 small nuclear ribonucleoprotein auxiliary factor (U2AF65) recognize polypyrimidine tracts using multiple modes of binding Rna. 9: 88-99. PMID 12554879 DOI: 10.1261/Rna.2131603  0.484
2002 Singh R. RNA-protein interactions that regulate pre-mRNA splicing Gene Expression. 10: 79-92. PMID 11868989  0.436
2000 Singh R, Banerjee H, Green MR. Differential recognition of the polypyrimidine-tract by the general splicing factor U2AF65 and the splicing repressor sex-lethal Rna. 6: 901-911. PMID 10864047 DOI: 10.1017/S1355838200000376  0.512
1997 Zapp ML, Young DW, Kumar A, Singh R, Boykin DW, Wilson WD, Green MR. Modulation of the Rev-RRE interaction by aromatic heterocyclic compounds. Bioorganic & Medicinal Chemistry. 5: 1149-55. PMID 9222509 DOI: 10.1016/S0968-0896(97)00063-1  0.397
1996 Valcárcel J, Gaur RK, Singh R, Green MR. Interaction of U2AF65 RS Region with Pre-mRNA of Branch Point and Promotion Base Pairing with U2 snRNA Science. 273: 1706-1709. PMID 8781232 DOI: 10.1126/Science.273.5282.1706  0.408
1995 Singh R, Valcarcel J, Green MR. Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins Science. 268: 1173-1176. PMID 7761834 DOI: 10.1126/Science.7761834  0.549
1993 Singh R, Green MR. Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase Science. 259: 365-368. PMID 8420004 DOI: 10.1126/Science.8420004  0.445
1993 Valcárcel J, Singh R, Zamore PD, Green MR. The protein Sex-lethal antagonizes the splicing factor U2AF to regulate alternative splicing of transformer pre-mRNA. Nature. 362: 171-5. PMID 7680770 DOI: 10.1038/362171A0  0.517
1992 Reddy R, Singh R, Shimba S. Methylated cap structures in eukaryotic RNAs: structure, synthesis and functions. Pharmacology & Therapeutics. 54: 249-267. PMID 1465477 DOI: 10.1016/0163-7258(92)90002-H  0.333
1990 Singh R, Gupta S, Reddy R. Capping of mammalian U6 small nuclear RNA in vitro is directed by a conserved stem-loop and AUAUAC sequence: conversion of a noncapped RNA into a capped RNA. Molecular and Cellular Biology. 10: 939-946. PMID 2304469 DOI: 10.1128/Mcb.10.3.939  0.39
1989 Singh R, Reddy R. Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA. Proceedings of the National Academy of Sciences of the United States of America. 86: 8280-8283. PMID 2813391 DOI: 10.1073/Pnas.86.21.8280  0.331
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