| Year |
Citation |
Score |
| 2023 |
Hsu TY, Nzabarushimana E, Wong D, Luo C, Beiko RG, Langille M, Huttenhower C, Nguyen LH, Franzosa EA. Profiling novel lateral gene transfer events in the human microbiome. Biorxiv : the Preprint Server For Biology. PMID 37609252 DOI: 10.1101/2023.08.08.552500 |
0.66 |
|
| 2022 |
Alcock BP, Huynh W, Chalil R, Smith KW, Raphenya AR, Wlodarski MA, Edalatmand A, Petkau A, Syed SA, Tsang KK, Baker SJC, Dave M, McCarthy MC, Mukiri KM, Nasir JA, ... ... Beiko RG, et al. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Research. PMID 36263822 DOI: 10.1093/nar/gkac920 |
0.681 |
|
| 2022 |
Sanderson H, Gray KL, Manuele A, Maguire F, Khan A, Liu C, Navanekere Rudrappa C, Nash JHE, Robertson J, Bessonov K, Oloni M, Alcock BP, Raphenya AR, McAllister TA, Peacock SJ, ... ... Beiko RG, et al. Exploring the mobilome and resistome of in a One Health context across two continents. Microbial Genomics. 8. PMID 36129737 DOI: 10.1099/mgen.0.000880 |
0.677 |
|
| 2022 |
Bernardino M, Beiko R. Genome-scale prediction of bacterial promoters. Bio Systems. 221: 104771. PMID 36099980 DOI: 10.1016/j.biosystems.2022.104771 |
0.303 |
|
| 2022 |
Liu C, Kenney T, Beiko RG, Gu H. The Community Coevolution Model with Application to the Study of Evolutionary Relationships between Genes based on Phylogenetic Profiles. Systematic Biology. PMID 35904761 DOI: 10.1093/sysbio/syac052 |
0.367 |
|
| 2022 |
Kim JI, Maguire F, Tsang KK, Gouliouris T, Peacock SJ, McAllister TA, McArthur AG, Beiko RG. Machine Learning for Antimicrobial Resistance Prediction: Current Practice, Limitations, and Clinical Perspective. Clinical Microbiology Reviews. e0017921. PMID 35612324 DOI: 10.1128/cmr.00179-21 |
0.67 |
|
| 2021 |
Tsang KK, Maguire F, Zubyk HL, Chou S, Edalatmand A, Wright GD, Beiko RG, McArthur AG. Identifying novel β-lactamase substrate activity through prediction of antimicrobial resistance. Microbial Genomics. PMID 33416461 DOI: 10.1099/mgen.0.000500 |
0.632 |
|
| 2020 |
Maguire F, Jia B, Gray KL, Lau WYV, Beiko RG, Brinkman FSL. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands. Microbial Genomics. PMID 33001022 DOI: 10.1099/mgen.0.000436 |
0.705 |
|
| 2020 |
Peabody MA, Lau WYV, Hoad G, Jia B, Maguire F, Gray KL, Beiko RG, Brinkman FSL. PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. Bioinformatics (Oxford, England). PMID 32108861 DOI: 10.1093/Bioinformatics/Btaa136 |
0.661 |
|
| 2019 |
Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen AV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran HK, Werfalli RE, Nasir JA, ... ... Beiko RG, et al. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Research. PMID 31665441 DOI: 10.1093/Nar/Gkz935 |
0.68 |
|
| 2019 |
Maguire F, Rehman MA, Carrillo C, Diarra MS, Beiko RG. Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning. Msystems. 4. PMID 31387929 DOI: 10.1128/mSystems.00211-19 |
0.673 |
|
| 2018 |
Nadukkalam Ravindran P, Bentzen P, Bradbury IR, Beiko RG. RADProc: A computationally efficient de novo locus assembler for population studies using RADseq data. Molecular Ecology Resources. PMID 30312001 DOI: 10.1111/1755-0998.12954 |
0.368 |
|
| 2018 |
Douglas GM, Beiko RG, Langille MGI. Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt. Methods in Molecular Biology (Clifton, N.J.). 1849: 169-177. PMID 30298254 DOI: 10.1007/978-1-4939-8728-3_11 |
0.706 |
|
| 2018 |
Hall M, Beiko RG. 16S rRNA Gene Analysis with QIIME2. Methods in Molecular Biology (Clifton, N.J.). 1849: 113-129. PMID 30298251 DOI: 10.1007/978-1-4939-8728-3_8 |
0.449 |
|
| 2018 |
Sylvester EVA, Beiko RG, Bentzen P, Paterson I, Horne JB, Watson B, Lehnert S, Duffy S, Clément M, Robertson MJ, Bradbury IR. Environmental extremes drive population structure at the northern range limit of Atlantic salmon in North America. Molecular Ecology. PMID 30152128 DOI: 10.1111/Mec.14849 |
0.352 |
|
| 2018 |
Liu C, Wright B, Allen-Vercoe E, Gu H, Beiko R. Phylogenetic clustering of genes reveals shared evolutionary trajectories and putative gene functions. Genome Biology and Evolution. PMID 30137329 DOI: 10.1093/Gbe/Evy178 |
0.4 |
|
| 2018 |
Nadukkalam Ravindran P, Bentzen P, Bradbury IR, Beiko RG. PMERGE: Computational filtering of paralogous sequences from RAD-seq data. Ecology and Evolution. 8: 7002-7013. PMID 30073062 DOI: 10.1002/Ece3.4219 |
0.427 |
|
| 2018 |
Bradbury IR, Wringe BF, Watson B, Paterson I, Horne J, Beiko R, Lehnert SJ, Clément M, Anderson EC, Jeffery NW, Duffy S, Sylvester E, Robertson M, Bentzen P. Genotyping-by-sequencing of genome-wide microsatellite loci reveals fine-scale harvest composition in a coastal Atlantic salmon fishery. Evolutionary Applications. 11: 918-930. PMID 29928300 DOI: 10.1111/Eva.12606 |
0.409 |
|
| 2018 |
Stanley RRE, DiBacco C, Lowen B, Beiko RG, Jeffery NW, Van Wyngaarden M, Bentzen P, Brickman D, Benestan L, Bernatchez L, Johnson C, Snelgrove PVR, Wang Z, Wringe BF, Bradbury IR. A climate-associated multispecies cryptic cline in the northwest Atlantic. Science Advances. 4: eaaq0929. PMID 29600272 DOI: 10.1126/Sciadv.Aaq0929 |
0.32 |
|
| 2018 |
Van Wyngaarden M, Snelgrove PVR, DiBacco C, Hamilton LC, Rodríguez-Ezpeleta N, Zhan L, Beiko RG, Bradbury IR. Oceanographic variation influences spatial genomic structure in the sea scallop,. Ecology and Evolution. 8: 2824-2841. PMID 29531698 DOI: 10.1002/Ece3.3846 |
0.388 |
|
| 2018 |
Sylvester EVA, Bentzen P, Bradbury IR, Clément M, Pearce J, Horne J, Beiko RG. Applications of random forest feature selection for fine-scale genetic population assignment. Evolutionary Applications. 11: 153-165. PMID 29387152 DOI: 10.1111/Eva.12524 |
0.334 |
|
| 2017 |
Jeffery NW, Stanley RRE, Wringe BF, Guijarro-Sabaniel J, Bourret V, Bernatchez L, Bentzen P, Beiko RG, Gilbey J, Clément M, Bradbury IR. Range-wide parallel climate-associated genomic clines in Atlantic salmon. Royal Society Open Science. 4: 171394. PMID 29291123 DOI: 10.1098/Rsos.171394 |
0.392 |
|
| 2017 |
Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, et al. SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology. Microbial Genomics. 3: e000116. PMID 29026651 DOI: 10.1099/mgen.0.000116 |
0.645 |
|
| 2017 |
Hall MW, Rohwer RR, Perrie J, McMahon KD, Beiko RG. Ananke: temporal clustering reveals ecological dynamics of microbial communities. Peerj. 5: e3812. PMID 28966891 DOI: 10.7717/Peerj.3812 |
0.367 |
|
| 2017 |
Jeffery NW, DiBacco C, Van Wyngaarden M, Hamilton LC, Stanley RRE, Bernier R, FitzGerald J, Matheson K, McKenzie CH, Nadukkalam Ravindran P, Beiko R, Bradbury IR. RAD sequencing reveals genomewide divergence between independent invasions of the European green crab (Carcinus maenas) in the Northwest Atlantic. Ecology and Evolution. 7: 2513-2524. PMID 28428843 DOI: 10.1002/Ece3.2872 |
0.405 |
|
| 2017 |
Chan CX, Beiko RG, Ragan MA. Scaling Up the Phylogenetic Detection of Lateral Gene Transfer Events. Methods in Molecular Biology (Clifton, N.J.). 1525: 421-432. PMID 27896730 DOI: 10.1007/978-1-4939-6622-6_16 |
0.502 |
|
| 2016 |
Hajibabaei M, Baird DJ, Fahner NA, Beiko R, Golding GB. A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27481782 DOI: 10.1098/Rstb.2015.0330 |
0.3 |
|
| 2016 |
Rutherford K, Meehan CJ, Langille MG, Tyack SG, McKay JC, McLean NL, Benkel K, Beiko RG, Benkel B. Discovery of an expended set of avian leukosis subroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline. Poultry Science. PMID 27354549 DOI: 10.3382/Ps/Pew194 |
0.42 |
|
| 2016 |
Zhan L, Paterson IG, Fraser BA, Watson B, Bradbury IR, Nadukkalam Ravindran P, Reznick D, Beiko RG, Bentzen P. MEGASAT: automated inference of microsatellite genotypes from sequence data. Molecular Ecology Resources. PMID 27333119 DOI: 10.1111/1755-0998.12561 |
0.31 |
|
| 2016 |
Dhanani AS, Block G, Dewar K, Forgetta V, Topp E, Beiko RG, Diarra MS. Correction: Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens. Plos One. 11: e0148706. PMID 26854571 DOI: 10.1371/Journal.Pone.0148706 |
0.418 |
|
| 2016 |
Petkau A, Bristow F, Matthews T, Adam J, Mabon P, Sieffert C, Enns E, Cabral J, Thiessen J, Knox N, Dooley D, Reimer A, Taboada E, Keddy A, Beiko RG, et al. Outbreak surveillance and investigation using IRIDA and SNVPhyl F1000research. 5. DOI: 10.7490/F1000Research.1112511.1 |
0.55 |
|
| 2015 |
Pesaranghader A, Matwin S, Sokolova M, Beiko RG. simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes. Bioinformatics (Oxford, England). PMID 26708333 DOI: 10.1093/Bioinformatics/Btv755 |
0.302 |
|
| 2015 |
Beiko RG. Microbial malaise: how can we classify the microbiome? Trends in Microbiology. 23: 671-9. PMID 26439295 DOI: 10.1016/J.Tim.2015.08.009 |
0.415 |
|
| 2015 |
Ning J, Beiko RG. Phylogenetic approaches to microbial community classification. Microbiome. 3: 47. PMID 26437943 DOI: 10.1186/S40168-015-0114-5 |
0.343 |
|
| 2015 |
Meehan CJ, Langille MG, Beiko RG. Frailty and the Microbiome. Interdisciplinary Topics in Gerontology and Geriatrics. 41: 54-65. PMID 26301979 DOI: 10.1159/000381162 |
0.59 |
|
| 2015 |
Wong DH, Beiko RG. Transfer of energy pathway genes in microbial enhanced biological phosphorus removal communities. Bmc Genomics. 16: 526. PMID 26173980 DOI: 10.1186/S12864-015-1752-5 |
0.402 |
|
| 2014 |
Langille MG, Meehan CJ, Koenig JE, Dhanani AS, Rose RA, Howlett SE, Beiko RG. Microbial shifts in the aging mouse gut. Microbiome. 2: 50. PMID 25520805 DOI: 10.1186/S40168-014-0050-9 |
0.564 |
|
| 2014 |
O'Doherty KC, Neufeld JD, Brinkman FS, Gardner H, Guttman DS, Beiko RG. Opinion: Conservation and stewardship of the human microbiome. Proceedings of the National Academy of Sciences of the United States of America. 111: 14312-3. PMID 25294925 DOI: 10.1073/Pnas.1413200111 |
0.606 |
|
| 2014 |
Whidden C, Zeh N, Beiko RG. Supertrees Based on the Subtree Prune-and-Regraft Distance. Systematic Biology. 63: 566-81. PMID 24695589 DOI: 10.1093/Sysbio/Syu023 |
0.414 |
|
| 2014 |
Meehan CJ, Beiko RG. A phylogenomic view of ecological specialization in the lachnospiraceae, a family of digestive tract-associated bacteria Genome Biology and Evolution. 6: 703-713. PMID 24625961 DOI: 10.1093/Gbe/Evu050 |
0.414 |
|
| 2014 |
Boon E, Meehan CJ, Whidden C, Wong DH, Langille MG, Beiko RG. Interactions in the microbiome: communities of organisms and communities of genes. Fems Microbiology Reviews. 38: 90-118. PMID 23909933 DOI: 10.1111/1574-6976.12035 |
0.629 |
|
| 2013 |
Eveleigh RJ, Meehan CJ, Archibald JM, Beiko RG. Being Aquifex aeolicus: Untangling a hyperthermophile's checkered past. Genome Biology and Evolution. 5: 2478-97. PMID 24281050 DOI: 10.1093/Gbe/Evt195 |
0.483 |
|
| 2013 |
Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnology. 31: 814-21. PMID 23975157 DOI: 10.1038/Nbt.2676 |
0.671 |
|
| 2013 |
Parks DH, Mankowski T, Zangooei S, Porter MS, Armanini DG, Baird DJ, Langille MG, Beiko RG. GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework. Plos One. 8: e69885. PMID 23922841 DOI: 10.1371/Journal.Pone.0069885 |
0.639 |
|
| 2013 |
Porter MS, Beiko RG. SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles. Bioinformatics (Oxford, England). 29: 1858-64. PMID 23732273 DOI: 10.1093/Bioinformatics/Btt313 |
0.371 |
|
| 2013 |
Parks DH, Beiko RG. Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities. The Isme Journal. 7: 173-83. PMID 22855211 DOI: 10.1038/Ismej.2012.88 |
0.361 |
|
| 2012 |
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, ... ... Beiko RG, et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature. 492: 59-65. PMID 23201678 DOI: 10.1038/Nature11681 |
0.634 |
|
| 2012 |
Smith SE, Showers-Corneli P, Dardenne CN, Harpending HH, Martin DP, Beiko RG. Comparative genomic and phylogenetic approaches to characterize the role of genetic recombination in mycobacterial evolution. Plos One. 7: e50070. PMID 23189179 DOI: 10.1371/Journal.Pone.0050070 |
0.483 |
|
| 2012 |
Meehan CJ, Beiko RG. Lateral gene transfer of an ABC transporter complex between major constituents of the human gut microbiome Bmc Microbiology. 12. PMID 23116195 DOI: 10.1186/1471-2180-12-248 |
0.353 |
|
| 2012 |
Parks DH, Beiko RG. Measuring community similarity with phylogenetic networks. Molecular Biology and Evolution. 29: 3947-58. PMID 22915830 DOI: 10.1093/Molbev/Mss200 |
0.333 |
|
| 2012 |
Hug LA, Beiko RG, Rowe AR, Richardson RE, Edwards EA. Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community. Bmc Genomics. 13: 327. PMID 22823523 DOI: 10.1186/1471-2164-13-327 |
0.365 |
|
| 2012 |
MacDonald NJ, Parks DH, Beiko RG. Rapid identification of high-confidence taxonomic assignments for metagenomic data Nucleic Acids Research. 40. PMID 22532608 DOI: 10.1093/Nar/Gks335 |
0.427 |
|
| 2012 |
Langille MGI, Meehan CJ, Beiko RG. Human microbiome: A genetic bazaar for microbes? Current Biology. 22: R20-R22. PMID 22240474 DOI: 10.1016/J.Cub.2011.11.023 |
0.636 |
|
| 2011 |
Parks DH, MacDonald NJ, Beiko RG. Classifying short genomic fragments from novel lineages using composition and homology Bmc Bioinformatics. 12. PMID 21827705 DOI: 10.1186/1471-2105-12-328 |
0.424 |
|
| 2011 |
Beiko RG. Telling the whole story in a 10,000-genome world. Biology Direct. 6: 34. PMID 21714939 DOI: 10.1186/1745-6150-6-34 |
0.454 |
|
| 2011 |
Chan CX, Beiko RG, Ragan MA. Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements. Journal of Bacteriology. 193: 3964-77. PMID 21622749 DOI: 10.1128/Jb.01524-10 |
0.436 |
|
| 2010 |
Holloway C, Beiko RG. Assembling networks of microbial genomes using linear programming. Bmc Evolutionary Biology. 10: 360. PMID 21092133 DOI: 10.1186/1471-2148-10-360 |
0.421 |
|
| 2010 |
Slater FR, Johnson CR, Blackall LL, Beiko RG, Bond PL. Monitoring associations between clade-level variation, overall community structure and ecosystem function in enhanced biological phosphorus removal (EBPR) systems using terminal-restriction fragment length polymorphism (T-RFLP). Water Research. 44: 4908-23. PMID 20701946 DOI: 10.1016/J.Watres.2010.07.028 |
0.321 |
|
| 2010 |
MacDonald NJ, Beiko RG. Efficient learning of microbial genotype-phenotype association rules Bioinformatics. 26: 1834-1840. PMID 20529891 DOI: 10.1093/Bioinformatics/Btq305 |
0.407 |
|
| 2010 |
Perry SC, Beiko RG. Distinguishing microbial genome fragments based on their composition: evolutionary and comparative genomic perspectives. Genome Biology and Evolution. 2: 117-31. PMID 20333228 DOI: 10.1093/Gbe/Evq004 |
0.464 |
|
| 2010 |
Parks DH, Beiko RG. Identifying biologically relevant differences between metagenomic communities. Bioinformatics (Oxford, England). 26: 715-21. PMID 20130030 DOI: 10.1093/Bioinformatics/Btq041 |
0.345 |
|
| 2010 |
Beiko RG. Gene sharing and genome evolution: networks in trees and trees in networks Biology & Philosophy. 25: 659-673. DOI: 10.1007/S10539-010-9217-3 |
0.403 |
|
| 2009 |
Chan CX, Beiko RG, Darling AE, Ragan MA. Lateral transfer of genes and gene fragments in prokaryotes. Genome Biology and Evolution. 1: 429-38. PMID 20333212 DOI: 10.1093/Gbe/Evp044 |
0.43 |
|
| 2009 |
MacDonald N, Parks D, Beiko R. SeqMonitor: influenza analysis pipeline and visualization. Plos Currents. 1. PMID 20025203 DOI: 10.1371/Currents.Rrn1040 |
0.371 |
|
| 2009 |
Parks DH, Porter M, Churcher S, Wang S, Blouin C, Whalley J, Brooks S, Beiko RG. GenGIS: A geospatial information system for genomic data. Genome Research. 19: 1896-904. PMID 19635847 DOI: 10.1101/Gr.095612.109 |
0.423 |
|
| 2009 |
Ragan MA, Beiko RG. Lateral genetic transfer: open issues. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2241-51. PMID 19571244 DOI: 10.1098/Rstb.2009.0031 |
0.443 |
|
| 2009 |
Beiko RG, Ragan MA. Untangling hybrid phylogenetic signals: horizontal gene transfer and artifacts of phylogenetic reconstruction. Methods in Molecular Biology (Clifton, N.J.). 532: 241-56. PMID 19271189 DOI: 10.1007/978-1-60327-853-9_14 |
0.444 |
|
| 2009 |
Chan CX, Darling AE, Beiko RG, Ragan MA. Are protein domains modules of lateral genetic transfer? Plos One. 4: e4524. PMID 19229333 DOI: 10.1371/Journal.Pone.0004524 |
0.39 |
|
| 2008 |
Beiko RG, Doolittle WF, Charlebois RL. The impact of reticulate evolution on genome phylogeny. Systematic Biology. 57: 844-56. PMID 19085328 DOI: 10.1080/10635150802559265 |
0.704 |
|
| 2008 |
Beiko RG, Ragan MA. Detecting lateral genetic transfer : a phylogenetic approach. Methods in Molecular Biology (Clifton, N.J.). 452: 457-69. PMID 18566777 DOI: 10.1007/978-1-60327-159-2_21 |
0.513 |
|
| 2007 |
Davies MR, McMillan DJ, Beiko RG, Barroso V, Geffers R, Sriprakash KS, Chhatwal GS. Virulence profiling of Streptococcus dysgalactiae subspecies equisimilis isolated from infected humans reveals 2 distinct genetic lineages that do not segregate with their phenotypes or propensity to cause diseases. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 44: 1442-54. PMID 17479940 DOI: 10.1086/516780 |
0.307 |
|
| 2007 |
Beiko RG, Charlebois RL. A simulation test bed for hypotheses of genome evolution. Bioinformatics (Oxford, England). 23: 825-31. PMID 17267425 DOI: 10.1093/Bioinformatics/Btm024 |
0.709 |
|
| 2006 |
Chan CX, Beiko RG, Ragan MA. Detecting recombination in evolving nucleotide sequences. Bmc Bioinformatics. 7: 412. PMID 16978423 DOI: 10.1186/1471-2105-7-412 |
0.379 |
|
| 2006 |
McMillan DJ, Beiko RG, Geffers R, Buer J, Schouls LM, Vlaminckx BJM, Wannet WJB, Sriprakash KS, Chhatwal GS. Genes for the Majority of Group A Streptococcal Virulence Factors and Extracellular Surface Proteins Do Not Confer an Increased Propensity to Cause Invasive Disease Clinical Infectious Diseases. 43: 884-891. PMID 16941370 DOI: 10.1086/507537 |
0.34 |
|
| 2006 |
Beiko RG, Hamilton N. Phylogenetic identification of lateral genetic transfer events. Bmc Evolutionary Biology. 6: 15. PMID 16472400 DOI: 10.1186/1471-2148-6-15 |
0.344 |
|
| 2006 |
Ragan MA, Harlow TJ, Beiko RG. Do different surrogate methods detect lateral genetic transfer events of different relative ages? Trends in Microbiology. 14: 4-8. PMID 16356716 DOI: 10.1016/J.Tim.2005.11.004 |
0.372 |
|
| 2005 |
Beiko RG, Harlow TJ, Ragan MA. Highways of gene sharing in prokaryotes. Proceedings of the National Academy of Sciences of the United States of America. 102: 14332-7. PMID 16176988 DOI: 10.1073/Pnas.0504068102 |
0.491 |
|
| 2005 |
Beiko RG, Chan CX, Ragan MA. A word-oriented approach to alignment validation. Bioinformatics (Oxford, England). 21: 2230-9. PMID 15728118 DOI: 10.1093/Bioinformatics/Bti335 |
0.324 |
|
| 2005 |
Beiko RG, Charlebois RL. GANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNA. Bmc Bioinformatics. 6: 36. PMID 15725347 DOI: 10.1186/1471-2105-6-36 |
0.655 |
|
| 2003 |
Charlebois RL, Clarke GD, Beiko RG, St Jean A. Characterization of species-specific genes using a flexible, web-based querying system. Fems Microbiology Letters. 225: 213-20. PMID 12951244 DOI: 10.1016/S0378-1097(03)00512-3 |
0.698 |
|
| 2003 |
Charlebois RL, Beiko RG, Ragan MA. Microbial phylogenomics: Branching out. Nature. 421: 217. PMID 12529621 DOI: 10.1038/421217A |
0.666 |
|
| 2002 |
Martin CC, Tsang CH, Beiko RG, Krone PH. Expression and genomic organization of the zebrafish chaperonin gene complex. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 804-11. PMID 12416612 DOI: 10.1139/G02-044 |
0.333 |
|
| 2002 |
Clarke GD, Beiko RG, Ragan MA, Charlebois RL. Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores. Journal of Bacteriology. 184: 2072-80. PMID 11914337 DOI: 10.1128/Jb.184.8.2072-2080.2002 |
0.722 |
|
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