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Jonathan R. Polimeni, Ph.D. - Publications

Affiliations: 
Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital, Boston, MA 
 Department of Radiology Harvard Medical School 
 Division of Health Sciences and Technology Massachusetts Institute of Technology, Cambridge, MA, United States 
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kotlarz P, Lankinen K, Hakonen M, Turpin T, Polimeni JR, Ahveninen J. Multilayer Network Analysis across Cortical Depths in Resting-State 7T fMRI. Biorxiv : the Preprint Server For Biology. PMID 38187540 DOI: 10.1101/2023.12.23.573208  0.306
2023 Edlow BL, Gilmore N, Tromly SL, Deary KB, McKinney IR, Hu CG, Kelemen JN, Maffei C, Tseng CJ, Llorden GR, Healy BC, Masood M, Cali RJ, Baxter T, Yao EF, ... ... Polimeni JR, et al. Optimizing Brain Health of United States Special Operations Forces. Journal of Special Operations Medicine : a Peer Reviewed Journal For Sof Medical Professionals. PMID 37851859 DOI: 10.55460/99QW-K0HG  0.411
2023 Haenelt D, Trampel R, Nasr S, Polimeni JR, Tootell RBH, Sereno MI, Pine KJ, Edwards LJ, Helbling S, Weiskopf N. High-resolution quantitative and functional MRI indicate lower myelination of thin and thick stripes in human secondary visual cortex. Elife. 12. PMID 36888685 DOI: 10.7554/eLife.78756  0.383
2022 Setzer B, Fultz NE, Gomez DEP, Williams SD, Bonmassar G, Polimeni JR, Lewis LD. A temporal sequence of thalamic activity unfolds at transitions in behavioral arousal state. Nature Communications. 13: 5442. PMID 36114170 DOI: 10.1038/s41467-022-33010-8  0.557
2022 Lankinen K, Ahlfors SP, Mamashli F, Blazejewska AI, Raij T, Turpin T, Polimeni JR, Ahveninen J. Cortical depth profiles of auditory and visual 7 T functional MRI responses in human superior temporal areas. Human Brain Mapping. PMID 35980015 DOI: 10.1002/hbm.26046  0.344
2022 Edlow BL, Bodien YG, Baxter T, Belanger H, Cali R, Deary K, Fischl B, Foulkes AS, Gilmore N, Greve DN, Hooker JM, Huang SY, Kelemen JN, Kimberly WT, Maffei C, ... ... Polimeni JR, et al. Long-Term Effects of Repeated Blast Exposure in United States Special Operations Forces Personnel: A Pilot Study Protocol. Journal of Neurotrauma. PMID 35620901 DOI: 10.1089/neu.2022.0030  0.43
2022 Wang J, Nasr S, Roe AW, Polimeni JR. Critical factors in achieving fine-scale functional MRI: Removing sources of inadvertent spatial smoothing. Human Brain Mapping. PMID 35417073 DOI: 10.1002/hbm.25867  0.48
2022 Balasubramanian M, Mulkern RV, Polimeni JR. In vivo irreversible and reversible transverse relaxation rates in human cerebral cortex via line scans at 7T with 250 micron resolution perpendicular to the cortical surface. Magnetic Resonance Imaging. PMID 35398027 DOI: 10.1016/j.mri.2022.04.001  0.688
2021 Nasr S, Kleinfeld D, Polimeni JR. The Global Configuration of Visual Stimuli Alters Co-Fluctuations of Cross-Hemispheric Human Brain Activity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 41: 9756-9766. PMID 34663628 DOI: 10.1523/JNEUROSCI.3214-20.2021  0.421
2021 Tian Q, Zaretskaya N, Fan Q, Ngamsombat C, Bilgic B, Polimeni JR, Huang SY. Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. Neuroimage. 117946. PMID 33711484 DOI: 10.1016/j.neuroimage.2021.117946  0.491
2020 Tian Q, Bilgic B, Fan Q, Ngamsombat C, Zaretskaya N, Fultz NE, Ohringer NA, Chaudhari AS, Hu Y, Witzel T, Setsompop K, Polimeni JR, Huang SY. Improving in vivo human cerebral cortical surface reconstruction using data-driven super-resolution. Cerebral Cortex (New York, N.Y. : 1991). PMID 32887984 DOI: 10.1093/Cercor/Bhaa237  0.481
2020 Balasubramanian M, Mulkern RV, Neil JJ, Maier SE, Polimeni JR. Probing in vivo cortical myeloarchitecture in humans via line-scan diffusion acquisitions at 7 T with 250-500 micron radial resolution. Magnetic Resonance in Medicine. PMID 32738088 DOI: 10.1002/Mrm.28419  0.655
2020 Nasr S, LaPierre C, Vaughn CE, Witzel T, Stockmann JP, Polimeni JR. In vivo functional localization of the temporal monocular crescent representation in human primary visual cortex. Neuroimage. 116516. PMID 31904490 DOI: 10.1016/J.Neuroimage.2020.116516  0.486
2019 Bause J, Polimeni JR, Stelzer J, In MH, Ehses P, Kraemer-Fernandez P, Aghaeifar A, Lacosse E, Pohmann R, Scheffler K. Impact of prospective motion correction, distortion correction methods and large vein bias on the spatial accuracy of cortical laminar fMRI at 9.4 Tesla. Neuroimage. 116434. PMID 31812715 DOI: 10.1016/j.neuroimage.2019.116434  0.458
2019 Fultz NE, Bonmassar G, Setsompop K, Stickgold RA, Rosen BR, Polimeni JR, Lewis LD. Coupled electrophysiological, hemodynamic, and cerebrospinal fluid oscillations in human sleep. Science (New York, N.Y.). 366: 628-631. PMID 31672896 DOI: 10.1126/Science.Aax5440  0.58
2019 Edlow BL, Mareyam A, Horn A, Polimeni JR, Witzel T, Tisdall MD, Augustinack JC, Stockmann JP, Diamond BR, Stevens A, Tirrell LS, Folkerth RD, Wald LL, Fischl B, van der Kouwe A. 7 Tesla MRI of the ex vivo human brain at 100 micron resolution. Scientific Data. 6: 244. PMID 31666530 DOI: 10.1038/S41597-019-0254-8  0.545
2019 Balasubramanian M, Polimeni JR, Mulkern RV. In vivo measurements of irreversible and reversible transverse relaxation rates in human basal ganglia at 7 T: making inferences about the microscopic and mesoscopic structure of iron and calcification deposits. Nmr in Biomedicine. e4140. PMID 31322331 DOI: 10.1002/Nbm.4140  0.567
2019 Viessmann O, Scheffler K, Bianciardi M, Wald LL, Polimeni JR. Dependence of resting-state fMRI fluctuation amplitudes on cerebral cortical orientation relative to the direction of B0 and anatomical axes. Neuroimage. PMID 31002965 DOI: 10.1016/J.Neuroimage.2019.04.036  0.467
2019 Blazejewska A, Fischl B, Wald LL, Polimeni JR. Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. Neuroimage. PMID 30690157 DOI: 10.1016/J.Neuroimage.2019.01.054  0.607
2019 Huber L, Merriam E, Kim I, Chai Y, Kashyap S, Polimeni J, Shim WM, Kim S, Ivanov D, Poser B, Bandettini P. Measuring layer-dependent CBV fMRI in the visual system F1000research. 8. DOI: 10.7490/F1000Research.1116770.1  0.417
2018 Lewis LD, Setsompop K, Rosen BR, Polimeni JR. Stimulus-dependent hemodynamic response timing across the human subcortical-cortical visual pathway identified through high spatiotemporal resolution 7T fMRI. Neuroimage. PMID 29935223 DOI: 10.1016/j.neuroimage.2018.06.056  0.437
2017 Zaretskaya N, Fischl B, Reuter M, Renvall V, Polimeni JR. Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. Neuroimage. PMID 28970143 DOI: 10.1016/j.neuroimage.2017.09.060  0.625
2017 Tong T, Aganj I, Ge T, Polimeni JR, Fischl B. Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. Neuroimage. PMID 28716714 DOI: 10.1016/J.Neuroimage.2017.07.019  0.545
2017 Polimeni JR, Renvall V, Zaretskaya N, Fischl B. Analysis strategies for high-resolution UHF-fMRI data. Neuroimage. PMID 28461062 DOI: 10.1016/j.neuroimage.2017.04.053  0.575
2017 Lin FH, Polimeni JR, Lin JL, Tsai KW, Chu YH, Wu PY, Li YT, Hsu YC, Tsai SY, Kuo WJ. Relative latency and temporal variability of hemodynamic responses at the human primary visual cortex. Neuroimage. PMID 28119135 DOI: 10.1016/j.neuroimage.2017.01.041  0.464
2016 Graedel NN, Polimeni JR, Guerin B, Gagoski B, Bonmassar G, Wald LL. Erratum to an anatomically realistic temperature phantom for radiofrequency heating measurements (Magn Reson Med 2015;73:442-450). Magnetic Resonance in Medicine. 76: 1642. PMID 27747939 DOI: 10.1002/Mrm.26363  0.563
2016 Ahveninen J, Chang WT, Huang S, Keil B, Kopco N, Rossi S, Bonmassar G, Witzel T, Polimeni JR. Intracortical depth analyses of frequency-sensitive regions of human auditory cortex using 7T fMRI. Neuroimage. PMID 27608603 DOI: 10.1016/J.Neuroimage.2016.09.010  0.688
2016 Renvall V, Witzel T, Wald LL, Polimeni JR. Automatic cortical surface reconstruction of high-resolution T1 echo planar imaging data. Neuroimage. 134: 338-54. PMID 27079529 DOI: 10.1016/J.Neuroimage.2016.04.004  0.452
2016 Nasr S, Polimeni JR, Tootell RB. Interdigitated Color- and Disparity-Selective Columns within Human Visual Cortical Areas V2 and V3. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 1841-57. PMID 26865609 DOI: 10.1523/JNEUROSCI.3518-15.2016  0.458
2014 Grabner G, Poser BA, Fujimoto K, Polimeni JR, Wald LL, Trattnig S, Toni I, Barth M. A study-specific fMRI normalization approach that operates directly on high resolution functional EPI data at 7 Tesla. Neuroimage. 100: 710-4. PMID 24973602 DOI: 10.1016/J.Neuroimage.2014.06.045  0.429
2014 Fujimoto K, Polimeni JR, van der Kouwe AJ, Reuter M, Kober T, Benner T, Fischl B, Wald LL. Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. Neuroimage. 90: 60-73. PMID 24345388 DOI: 10.1016/J.Neuroimage.2013.12.012  0.609
2013 Lombaert H, Grady L, Polimeni JR, Cheriet F. FOCUSR: feature oriented correspondence using spectral regularization--a method for precise surface matching. Ieee Transactions On Pattern Analysis and Machine Intelligence. 35: 2143-60. PMID 23868776 DOI: 10.1109/Tpami.2012.276  0.64
2013 Glasser MF, Sotiropoulos SN, Wilson JA, Coalson TS, Fischl B, Andersson JL, Xu J, Jbabdi S, Webster M, Polimeni JR, Van Essen DC, Jenkinson M. The minimal preprocessing pipelines for the Human Connectome Project. Neuroimage. 80: 105-24. PMID 23668970 DOI: 10.1016/J.Neuroimage.2013.04.127  0.581
2013 Weller DS, Polimeni JR, Grady L, Wald LL, Adalsteinsson E, Goyal VK. Sparsity-promoting calibration for GRAPPA accelerated parallel MRI reconstruction. Ieee Transactions On Medical Imaging. 32: 1325-35. PMID 23584259 DOI: 10.1109/Tmi.2013.2256923  0.629
2012 Cohen-Adad J, Polimeni JR, Helmer KG, Benner T, McNab JA, Wald LL, Rosen BR, Mainero C. T₂* mapping and B₀ orientation-dependence at 7 T reveal cyto- and myeloarchitecture organization of the human cortex. Neuroimage. 60: 1006-14. PMID 22270354 DOI: 10.1016/J.Neuroimage.2012.01.053  0.457
2012 Weller DS, Polimeni JR, Grady L, Wald LL, Adalsteinsson E, Goyal VK. Denoising sparse images from GRAPPA using the nullspace method. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 68: 1176-89. PMID 22213069 DOI: 10.1002/Mrm.24116  0.646
2011 Iacono MI, Makris N, Mainardi L, Gale J, van der Kouwe A, Mareyam A, Polimeni JR, Wald LL, Fischl B, Eskandar EN, Bonmassar G. Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2011: 5706-9. PMID 22255635 DOI: 10.1109/IEMBS.2011.6091381  0.694
2011 Lombaert H, Grady L, Polimeni JR, Cheriet F. Fast brain matching with spectral correspondence. Information Processing in Medical Imaging : Proceedings of the ... Conference. 22: 660-73. PMID 21761694 DOI: 10.1007/978-3-642-22092-0_54  0.689
2011 Yeo BT, Krienen FM, Sepulcre J, Sabuncu MR, Lashkari D, Hollinshead M, Roffman JL, Smoller JW, Zöllei L, Polimeni JR, Fischl B, Liu H, Buckner RL. The organization of the human cerebral cortex estimated by intrinsic functional connectivity. Journal of Neurophysiology. 106: 1125-65. PMID 21653723 DOI: 10.1152/Jn.00338.2011  0.575
2011 Weller DS, Polimeni JR, Grady L, Wald LL, Adalsteinsson E, Goyal VK. Regularizing GRAPPA using simultaneous sparsity to recover de-noised images Proceedings of Spie - the International Society For Optical Engineering. 8138. DOI: 10.1117/12.896655  0.633
2010 Polimeni JR, Fischl B, Greve DN, Wald LL. Laminar analysis of 7T BOLD using an imposed spatial activation pattern in human V1. Neuroimage. 52: 1334-46. PMID 20460157 DOI: 10.1016/J.Neuroimage.2010.05.005  0.616
2010 Balasubramanian M, Polimeni JR, Schwartz EL. Near-isometric flattening of brain surfaces. Neuroimage. 51: 694-703. PMID 20149886 DOI: 10.1016/J.Neuroimage.2010.02.008  0.74
2009 Fischl B, Stevens AA, Rajendran N, Yeo BT, Greve DN, Van Leemput K, Polimeni JR, Kakunoori S, Buckner RL, Pacheco J, Salat DH, Melcher J, Frosch MP, Hyman BT, Grant PE, et al. Predicting the location of entorhinal cortex from MRI. Neuroimage. 47: 8-17. PMID 19376238 DOI: 10.1016/J.Neuroimage.2009.04.033  0.594
2009 Balasubramanian M, Polimeni JR, Schwartz EL. Exact geodesics and shortest paths on polyhedral surfaces. Ieee Transactions On Pattern Analysis and Machine Intelligence. 31: 1006-16. PMID 19372606 DOI: 10.1109/Tpami.2008.213  0.659
2009 Hinds O, Polimeni JR, Rajendran N, Balasubramanian M, Amunts K, Zilles K, Schwartz EL, Fischl B, Triantafyllou C. Locating the functional and anatomical boundaries of human primary visual cortex. Neuroimage. 46: 915-22. PMID 19328238 DOI: 10.1016/J.Neuroimage.2009.03.036  0.788
2009 Polimeni J, Fischl B, Greve D, Wald L. Laminar analysis of high isotropic resolution BOLD activation with a resolution pattern stimulus in human V1 at 7T Neuroimage. 47: S196. DOI: 10.1016/S1053-8119(09)72220-7  0.581
2008 Lin FH, Witzel T, Mandeville JB, Polimeni JR, Zeffiro TA, Greve DN, Wiggins G, Wald LL, Belliveau JW. Event-related single-shot volumetric functional magnetic resonance inverse imaging of visual processing. Neuroimage. 42: 230-47. PMID 18538587 DOI: 10.1016/J.Neuroimage.2008.04.179  0.431
2008 Hinds O, Polimeni JR, Rajendran N, Balasubramanian M, Wald LL, Augustinack JC, Wiggins G, Rosas HD, Fischl B, Schwartz EL. The intrinsic shape of human and macaque primary visual cortex. Cerebral Cortex (New York, N.Y. : 1991). 18: 2586-95. PMID 18308709 DOI: 10.1093/Cercor/Bhn016  0.784
2008 Hinds OP, Rajendran N, Polimeni JR, Augustinack JC, Wiggins G, Wald LL, Diana Rosas H, Potthast A, Schwartz EL, Fischl B. Accurate prediction of V1 location from cortical folds in a surface coordinate system. Neuroimage. 39: 1585-99. PMID 18055222 DOI: 10.1016/J.Neuroimage.2007.10.033  0.806
2006 Polimeni JR, Balasubramanian M, Schwartz EL. Multi-area visuotopic map complexes in macaque striate and extra-striate cortex. Vision Research. 46: 3336-59. PMID 16831455 DOI: 10.1016/J.Visres.2006.03.006  0.767
2005 Polimeni JR, Granquist-Fraser D, Wood RJ, Schwartz EL. Physical limits to spatial resolution of optical recording: clarifying the spatial structure of cortical hypercolumns. Proceedings of the National Academy of Sciences of the United States of America. 102: 4158-63. PMID 15746240 DOI: 10.1073/Pnas.0500291102  0.731
2005 Polimeni JR, Hinds OP, Balasubramanian M, van der Kouwe AJW, Wald LL, Dale AM, Fischl B, Schwartz EL. Two-dimensional mathematical structure of the human visuotopic map complex in V1, V2, and V3 measured via fMRI at 3 and 7 Tesla Journal of Vision. 5: 898-898. DOI: 10.1167/5.8.898  0.786
2005 Wagner RE, Polimeni JR, Schwartz EL. Gibson, meet topography: The dipole structure of extra striate cortex facilitates navigation via optical flow Journal of Vision. 5: 895-895. DOI: 10.1167/5.8.895  0.652
2002 Balasubramanian M, Polimeni J, Schwartz EL. The V1 -V2-V3 complex: quasiconformal dipole maps in primate striate and extra-striate cortex. Neural Networks : the Official Journal of the International Neural Network Society. 15: 1157-63. PMID 12425434 DOI: 10.1016/S0893-6080(02)00094-1  0.733
2002 Polimeni J, Schwartz E. Neural representation of sensory data Behavioral and Brain Sciences. 25: 207-208. DOI: 10.1017/S0140525X02470045  0.625
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