Seth M. Bybee, Ph.D. - Publications

Affiliations: 
2008 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Entomology Biology, Paleontology, Evolution and Development Biology

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Motyka M, Kusy D, Arias-Bohart ET, Bybee SM, Bocak L. Enigmatic : Shedding light on the delayed origin of bioluminescence in ancient Gondwanan click beetles. Iscience. 26: 108440. PMID 38077142 DOI: 10.1016/j.isci.2023.108440  0.359
2023 Saxton NA, Powell GS, Bybee SM. A story of vicariance? how the geology of oceanic archipelagos influenced the evolutionary history of endemic damselflies. Molecular Phylogenetics and Evolution. 186: 107831. PMID 37257796 DOI: 10.1016/j.ympev.2023.107831  0.798
2022 Saxton NA, Marinov MG, Bybee SM. Revision of Ober & Staniczek, 2009 (Odonata, Coenagrionidae), with description of seven new species. Zookeys. 1128: 129-169. PMID 36762242 DOI: 10.3897/zookeys.1128.89751  0.768
2022 Powell GS, Saxton NA, Pacheco YM, Stanger-Hall KF, Martin GJ, Kusy D, Felipe Lima Da Silveira L, Bocak L, Branham MA, Bybee SM. Beetle bioluminescence outshines extant aerial predators. Proceedings. Biological Sciences. 289: 20220821. PMID 35855602 DOI: 10.1098/rspb.2022.0821  0.769
2022 Dunn KN, Davis SR, Herhold HW, Stanger-Hall KF, Bybee SM, Branham MA. Morphological changes in the tracheal system associated with light organs of the firefly Photinus pyralis (Coleoptera: Lampyridae) across life stages. Plos One. 17: e0268112. PMID 35648743 DOI: 10.1371/journal.pone.0268112  0.65
2021 Sutherland LN, Powell GS, Bybee SM. Validating species distribution models to illuminate coastal fireflies in the South Pacific (Coleoptera: Lampyridae). Scientific Reports. 11: 17397. PMID 34462462 DOI: 10.1038/s41598-021-96534-x  0.724
2021 Saxton NA, Paxman EM, Dean AM, Jensen CR, Powell GS, Bybee SM. Factors Influencing the Distribution of Endemic Damselflies in Vanuatu. Insects. 12. PMID 34442236 DOI: 10.3390/insects12080670  0.775
2021 Suvorov A, Scornavacca C, Fujimoto MS, Bodily P, Clement M, Crandall KA, Whiting MF, Schrider DR, Bybee SM. Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies. Systematic Biology. PMID 34324671 DOI: 10.1093/sysbio/syab063  0.799
2021 Martin GJ, Lower SE, Suvorov A, Bybee SM. Molecular Evolution of Phototransduction Pathway Genes in Nocturnal and Diurnal Fireflies (Coleoptera: Lampyridae). Insects. 12. PMID 34207188 DOI: 10.3390/insects12060561  0.797
2021 Bybee SM, Kalkman VJ, Erickson RJ, Frandsen PB, Breinholt JW, Suvorov A, Dijkstra KB, Cordero-Rivera A, Skevington JH, Abbott JC, Sanchez Herrera M, Lemmon AR, Moriarty Lemmon E, Ware JL. Phylogeny and classification of Odonata using targeted genomics. Molecular Phylogenetics and Evolution. 107115. PMID 33609713 DOI: 10.1016/j.ympev.2021.107115  0.815
2020 Saxton NA, Powell GS, Bybee SM. Prevalence of leg regeneration in damselflies reevaluated: A case study in Coenagrionidae. Arthropod Structure & Development. 59: 100995. PMID 32977262 DOI: 10.1016/j.asd.2020.100995  0.779
2020 Saxton NA, Powell GS, Martin GJ, Bybee SM. Two new species of coastal Atyphella Olliff (Lampyridae: Luciolinae). Zootaxa. 4722: zootaxa.4722.3.4. PMID 32230625 DOI: 10.11646/Zootaxa.4722.3.4  0.799
2020 THEISCHINGER G, MARINOV M, BYBEE S, JENSEN C, THEUERKAUF J, RASHNI B.

The genus Gynacantha Rambur, 1842 in the South Pacific (Odonata: Anisoptera: Aeshnidae)

Zootaxa. 4778: 171-195. DOI: 10.11646/Zootaxa.4778.1.7 
0.327
2020 Kusy D, He J, Bybee SM, Motyka M, Bi W, Podsiadlowski L, Li X, Bocak L. Phylogenomic relationships of bioluminescent elateroids define the ‘lampyroid’ clade with clicking Sinopyrophoridae as its earliest member Systematic Entomology. DOI: 10.1111/Syen.12451  0.329
2020 Hadden RA, Saxton NA, Gerlach PS, Nielson PL, Brown SD, Bybee SM, Powell GS. Nitidulidae (Coleoptera: Cucujoidea) of Vanuatu Journal of Asia-Pacific Entomology. 23: 470-476. DOI: 10.1016/J.Aspen.2020.03.005  0.792
2019 Diray-Arce J, Knowles A, Suvorov A, O'Brien J, Hansen C, Bybee SM, Gul B, Khan MA, Nielsen BL. Identification and evolutionary characterization of salt-responsive transcription factors in the succulent halophyte Suaeda fruticosa. Plos One. 14: e0222940. PMID 31545841 DOI: 10.1371/Journal.Pone.0222940  0.775
2019 Toussaint EFA, Bybee SM, Erickson R, Condamine FL. Forest Giants on Different Evolutionary Branches: Ecomorphological Convergence in Helicopter Damselflies. Evolution; International Journal of Organic Evolution. PMID 30734925 DOI: 10.1111/Evo.13695  0.45
2019 Martin GJ, Stanger-Hall KF, Branham MA, Da Silveira LFL, Lower SE, Hall DW, Li X, Lemmon AR, Moriarty Lemmon E, Bybee SM. Higher-Level Phylogeny and Reclassification of Lampyridae (Coleoptera: Elateroidea) Insect Systematics and Diversity. 3. DOI: 10.1093/Isd/Ixz024  0.702
2019 Jensen JL, Manwaring KF, Gill RA, Sudweeks RS, Davies RS, Olsen JA, Phillips AJ, Bybee SM. Religious Affiliation and Religiosity and Their Impact on Scientific Beliefs in the United States Bioscience. 69: 292-304. DOI: 10.1093/Biosci/Biz014  0.322
2019 Saxton NA, Powell GS, Serrano SJ, Monson AK, Bybee SM. Natural history and ecological niche modelling of coastal Atyphella Olliff Larvae (Lampyridae: Luciolinae) in Vanuatu Journal of Natural History. 53: 2771-2780. DOI: 10.1080/00222933.2020.1749955  0.797
2018 Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, ... ... Bybee SM, et al. Firefly genomes illuminate parallel origins of bioluminescence in beetles. Elife. 7. PMID 30324905 DOI: 10.7554/Elife.36495  0.808
2018 Sánchez-Guillén RA, Cordero-Rivera A, Rivas-Torres A, Wellenreuther M, Bybee S, Hansson B, Velasquez-Vélez MI, Realpe E, Chávez-Ríos JR, Villalobos F, Dumont H. The evolutionary history of colour polymorphism in Ischnura damselflies. Journal of Evolutionary Biology. PMID 29746704 DOI: 10.1111/Jeb.13289  0.41
2018 Fallon TR, Lower SE, Chang C, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, ... ... Bybee SM, et al. Author response: Firefly genomes illuminate parallel origins of bioluminescence in beetles Elife. DOI: 10.7554/Elife.36495.176  0.764
2017 Sharkey CR, Fujimoto MS, Lord NP, Shin S, McKenna DD, Suvorov A, Martin GJ, Bybee SM. Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles. Scientific Reports. 7: 8. PMID 28127058 DOI: 10.1038/S41598-017-00061-7  0.785
2017 BÜSSE S, HECKMANN S, HÖRNSCHEMEYER T, BYBEE SM. The phylogenetic relevance of thoracic musculature: a case study including a description of the thorax anatomy of Zygoptera (Insecta: Odonata) larvae Systematic Entomology. 43: 31-42. DOI: 10.1111/Syen.12246  0.425
2016 Martin GJ, Branham MA, Whiting MF, Bybee SM. Total evidence phylogeny and the evolution of adult bioluminescence in fireflies (Coleoptera: Lampyridae). Molecular Phylogenetics and Evolution. PMID 27998815 DOI: 10.1016/J.Ympev.2016.12.017  0.775
2016 Bybee S, Córdoba-Aguilar A, Duryea MC, Futahashi R, Hansson B, Lorenzo-Carballa MO, Schilder R, Stoks R, Suvorov A, Svensson EI, Swaegers J, Takahashi Y, Watts PC, Wellenreuther M. Odonata (dragonflies and damselflies) as a bridge between ecology and evolutionary genomics. Frontiers in Zoology. 13: 46. PMID 27766110 DOI: 10.1186/S12983-016-0176-7  0.797
2016 Suvorov A, Jensen NO, Sharkey CR, Fujimoto MS, Bodily P, Wightman HM, Ogden TH, Clement MJ, Bybee SM. Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata. Molecular Ecology. PMID 27758014 DOI: 10.1111/Mec.13884  0.796
2016 Fujimoto MS, Suvorov A, Jensen NO, Clement MJ, Snell Q, Bybee SM. The OGCleaner: filtering false-positive homology clusters. Bioinformatics (Oxford, England). PMID 27614349 DOI: 10.1093/Bioinformatics/Btw571  0.768
2016 Lord NP, Plimpton RL, Sharkey CR, Suvorov A, Lelito JP, Willardson BM, Bybee SM. A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae). Bmc Evolutionary Biology. 16: 107. PMID 27193495 DOI: 10.1186/S12862-016-0674-4  0.784
2016 Naegle MA, Mugleston JD, Bybee SM, Whiting MF. Reassessing the phylogenetic position of the epizoic earwigs (Insecta: Dermaptera). Molecular Phylogenetics and Evolution. 100: 382-90. PMID 27033951 DOI: 10.1016/J.Ympev.2016.03.012  0.663
2016 Fujimoto MS, Suvorov A, Jensen NO, Clement MJ, Bybee SM. Detecting false positive sequence homology: a machine learning approach. Bmc Bioinformatics. 17: 101. PMID 26911862 DOI: 10.1186/S12859-016-0955-3  0.785
2016 Mugleston J, Naegle M, Song H, Bybee SM, Ingley S, Suvorov A, Whiting MF. Reinventing the leaf: Multiple origins of leaf-like wings in katydids (Orthoptera:Tettigoniidae) Invertebrate Systematics. 30: 335-352. DOI: 10.1071/Is15055  0.783
2016 Manwaring KF, Whiting MF, Wilcox E, Bybee SM. A study of common scorpionfly (Mecoptera: Panorpidae) visual systems reveals the expression of a single opsin Organisms Diversity and Evolution. 16: 201-209. DOI: 10.1007/S13127-015-0241-7  0.667
2015 Manwaring KF, Jensen JL, Gill RA, Bybee SM. Influencing highly religious undergraduate perceptions of evolution: Mormons as a case study Evolution: Education and Outreach. 8. DOI: 10.1186/S12052-015-0051-6  0.319
2015 BYBEE SM, HANSEN Q, BÜSSE S, CAHILL WIGHTMAN HM, BRANHAM MA. For consistency's sake: the precise use of larva, nymph and naiad within Insecta Systematic Entomology. 40: 667-670. DOI: 10.1111/Syen.12136  0.641
2015 Martin GJ, Lord NP, Branham MA, Bybee SM. Review of the firefly visual system (Coleoptera: Lampyridae) and evolution of the opsin genes underlying color vision Organisms Diversity and Evolution. DOI: 10.1007/S13127-015-0212-Z  0.792
2014 Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, et al. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. Bmc Bioinformatics. 15: 350. PMID 25407802 DOI: 10.1186/S12859-014-0350-X  0.795
2013 Dijkstra KDB, Bechly G, Bybee SM, Dow RA, Dumont HJ, Fleck G, Garrison RW, Hämäläinen M, Kalkman VJ, Karube H, May ML, Orr AG, Paulson DR, Rehn AC, Theischinger G, et al. The classification and diversity of dragonflies and damselflies (Odonata) Zootaxa. 3703: 36-45. DOI: 10.11646/Zootaxa.3703.1.9  0.338
2012 Bybee SM, Yuan F, Ramstetter MD, Llorente-Bousquets J, Reed RD, Osorio D, Briscoe AD. UV photoreceptors and UV-yellow wing pigments in Heliconius butterflies allow a color signal to serve both mimicry and intraspecific communication. The American Naturalist. 179: 38-51. PMID 22173459 DOI: 10.1086/663192  0.613
2012 Ingley SJ, Bybee SM, Tennessen KJ, Whiting MF, Branham MA. Life on the fly: Phylogenetics and evolution of the helicopter damselflies (Odonata, Pseudostigmatidae) Zoologica Scripta. 41: 637-650. DOI: 10.1111/J.1463-6409.2012.00555.X  0.807
2012 Bybee SM, Johnson KK, Gering EJ, Whiting MF, Crandall KA. All the better to see you with: A review of odonate color vision with transcriptomic insight into the odonate eye Organisms Diversity and Evolution. 12: 241-250. DOI: 10.1007/S13127-012-0090-6  0.752
2011 Bybee SM, Bracken-Grissom H, Haynes BD, Hermansen RA, Byers RL, Clement MJ, Udall JA, Wilcox ER, Crandall KA. Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biology and Evolution. 3: 1312-23. PMID 22002916 DOI: 10.1093/Gbe/Evr106  0.78
2011 Bybee SM, Bracken-Grissom HD, Hermansen RA, Clement MJ, Crandall KA, Felder DL. Directed next generation sequencing for phylogenetics: An example using Decapoda (Crustacea) Zoologischer Anzeiger. 250: 497-506. DOI: 10.1016/J.Jcz.2011.05.010  0.761
2010 Briscoe AD, Bybee SM, Bernard GD, Yuan F, Sison-Mangus MP, Reed RD, Warren AD, Llorente-Bousquets J, Chiao CC. Positive selection of a duplicated UV-sensitive visual pigment coincides with wing pigment evolution in Heliconius butterflies. Proceedings of the National Academy of Sciences of the United States of America. 107: 3628-33. PMID 20133601 DOI: 10.1073/Pnas.0910085107  0.782
2010 Bybee SM, Zaspel JM, Beucke KA, Scott CH, Smith BW, Branham MA. Are molecular data supplanting morphological data in modern phylogenetic studies? Systematic Entomology. 35: 2-5. DOI: 10.1111/J.1365-3113.2009.00496.X  0.755
2010 Briscoe AD, Bybee SM, Bernard GD, Yuan F, Sison-Mangus MP, Reed RD, Warren AD, Llorente-Bousquets J, Chiao CC. Reply to Nozawa et al.: Complementary statistical methods support positive selection of a duplicated UV opsin gene in Heliconius Proceedings of the National Academy of Sciences of the United States of America. 107: E97. DOI: 10.1073/Pnas.1004040107  0.781
2010 Capa M, Bybee DR, Bybee SM. Establishing species and species boundaries in Sabellastarte Krøyer, 1856 (Annelida: Sabellidae): an integrative approach Organisms Diversity & Evolution. 10: 351-371. DOI: 10.1007/S13127-010-0033-Z  0.433
2009 Nel A, Fleck G, Garrouste R, Gand G, Lapeyrie J, Bybee SM, Prokop J. Revision of Permo-Carboniferous griffenflies (Insecta: Odonatoptera: Meganisoptera) based upon new species and redescription of selected poorly known taxa from Eurasia Palaeontographica Abteilung A. 289: 89-121. DOI: 10.1127/Pala/289/2009/89  0.402
2008 Bybee SM, Ogden TH, Branham MA, Whiting MF. Molecules, morphology and fossils: a comprehensive approach to odonate phylogeny and the evolution of the odonate wing. Cladistics : the International Journal of the Willi Hennig Society. 24: 477-514. PMID 34879634 DOI: 10.1111/j.1096-0031.2007.00191.x  0.767
2008 BYBEE SM, TENNESSEN KJ. Description of the female and nymph of Philogenia mangosisa from southern Ecuador (Odonata: Megapodagrionidae) Zootaxa. 1787: 63. DOI: 10.11646/Zootaxa.1787.1.4  0.325
2008 Bybee SM, Ogden TH, Branham MA, Whiting MF. Molecules, morphology and fossils: A comprehensive approach to odonate phylogeny and the evolution of the odonate wing Cladistics. 24: 477-514. DOI: 10.1111/J.1096-0031.2007.00191.X  0.778
2008 Bybee SM, Branham MA. Scanning Rocks for Data American Entomologist. 54: 214-217. DOI: 10.1093/Ae/54.4.214  0.65
2006 NEARNS EH, BRANHAM MA, BYBEE SM. Cerambycidae (Coleoptera) types of the Fernando de Zayas collection, Havana, Cuba Zootaxa. 1270: 1. DOI: 10.11646/Zootaxa.1270.1.1  0.757
2004 Bybee SM, Taylor SD, Riley Nelson C, Whiting MF. A phylogeny of robber flies (Diptera: Asilidae) at the subfamilial level: molecular evidence. Molecular Phylogenetics and Evolution. 30: 789-97. PMID 15012956 DOI: 10.1016/S1055-7903(03)00253-7  0.651
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