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Vicente Pelechano - Publications

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48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chia M, Li C, Marques S, Pelechano V, Luscombe NM, van Werven FJ. High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts. Genome Biology. 22: 34. PMID 33446241 DOI: 10.1186/s13059-020-02245-3  0.5
2020 Wang J, Li B, Marques S, Steinmetz LM, Wei W, Pelechano V. TIF-Seq2 disentangles overlapping isoforms in complex human transcriptomes. Nucleic Acids Research. PMID 32816037 DOI: 10.1093/Nar/Gkaa691  0.712
2020 Liang S, Ezerskyte M, Wang J, Pelechano V, Dreij K. Transcriptional mutagenesis dramatically alters genome-wide p53 transactivation landscape. Scientific Reports. 10: 13513. PMID 32782319 DOI: 10.1038/S41598-020-70412-4  0.409
2020 Wu M, Karadoulama E, Lloret-Llinares M, Rouviere JO, Vaagensø CS, Moravec M, Li B, Wang J, Wu G, Gockert M, Pelechano V, Jensen TH, Sandelin A. The RNA exosome shapes the expression of key protein-coding genes. Nucleic Acids Research. PMID 32710631 DOI: 10.1093/nar/gkaa594  0.543
2020 Thomas QA, Ard R, Liu J, Li B, Wang J, Pelechano V, Marquardt S. Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis. Nature Communications. 11: 2589. PMID 32444691 DOI: 10.1038/s41467-020-16390-7  0.588
2019 Wei W, Hennig BP, Wang J, Zhang Y, Piazza I, Pareja Sanchez Y, Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V. Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast. Genome Research. PMID 31740578 DOI: 10.1101/Gr.243378.118  0.706
2019 Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, Bach-Pages M, Cox V, Avolio R, Davis T, Hester S, Sohier TJM, Li B, Heikel G, Michlewski G, ... ... Pelechano V, et al. System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Molecular Cell. PMID 30799147 DOI: 10.1016/J.Molcel.2019.01.017  0.362
2019 Nielsen M, Ard R, Leng X, Ivanov M, Kindgren P, Pelechano V, Marquardt S. Transcription-driven Chromatin repression of Intragenic transcription start sites. Plos Genetics. 15: e1007969. PMID 30707695 DOI: 10.1371/journal.pgen.1007969  0.52
2018 Gaviraghi M, Vivori C, Pareja Sanchez Y, Invernizzi F, Cattaneo A, Santoliquido BM, Frenquelli M, Segalla S, Bachi A, Doglioni C, Pelechano V, Cittaro D, Tonon G. Tumor suppressor PNRC1 blocks rRNA maturation by recruiting the decapping complex to the nucleolus. The Embo Journal. PMID 30373810 DOI: 10.15252/embj.201899179  0.376
2018 Garre E, Pelechano V, Sánchez Del Pino M, Alepuz P, Sunnerhagen P. The Lsm1-7/Pat1 complex binds to stress-activated mRNAs and modulates the response to hyperosmotic shock. Plos Genetics. 14: e1007563. PMID 30059503 DOI: 10.1371/Journal.Pgen.1007563  0.391
2018 Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V. Multiplexed ChIP-Seq Using Direct Nucleosome Barcoding: A Tool for High-Throughput Chromatin Analysis. Methods in Molecular Biology (Clifton, N.J.). 1689: 177-194. PMID 29027175 DOI: 10.1007/978-1-4939-7380-4_16  0.575
2017 Pelechano V. From transcriptional complexity to cellular phenotypes: Lessons from yeast. Yeast (Chichester, England). 34: 475-482. PMID 28866863 DOI: 10.1002/yea.3277  0.419
2017 Gómez-Herreros F, Margaritis T, Rodríguez-Galán O, Pelechano V, Begley V, Millán-Zambrano G, Morillo-Huesca M, Muñoz-Centeno MC, Pérez-Ortín JE, de la Cruz J, Holstege FCP, Chávez S. The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation. Nucleic Acids Research. PMID 28637236 DOI: 10.1093/nar/gkx529  0.508
2017 Pelechano V, Alepuz P. eIF5A facilitates translation termination globally and promotes the elongation of many non polyproline-specific tripeptide sequences. Nucleic Acids Research. 45: 7326-7338. PMID 28549188 DOI: 10.1093/nar/gkx479  0.404
2016 Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/Science.Aaf1420  0.49
2016 Chen Y, Pai AA, Herudek J, Lubas M, Meola N, Järvelin AI, Andersson R, Pelechano V, Steinmetz LM, Jensen TH, Sandelin A. Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters. Nature Genetics. PMID 27455346 DOI: 10.1038/Ng.3616  0.694
2016 Chlamydas S, Holz H, Samata M, Chelmicki T, Georgiev P, Pelechano V, Dündar F, Dasmeh P, Mittler G, Cadete FT, Ramírez F, Conrad T, Wei W, Raja S, Manke T, et al. Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation. Nature Structural & Molecular Biology. PMID 27183194 DOI: 10.1038/Nsmb.3233  0.65
2016 Garrido-Godino AI, García-López MC, García-Martínez J, Pelechano V, Medina DA, Pérez-Ortín JE, Navarro F. Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability during stress situations in yeast. Biochimica Et Biophysica Acta. 1859: 731-43. PMID 27001033 DOI: 10.1016/j.bbagrm.2016.03.008  0.474
2016 Adjalley SH, Chabbert CD, Klaus B, Pelechano V, Steinmetz LM. Landscape and Dynamics of Transcription Initiation in the Malaria Parasite Plasmodium falciparum. Cell Reports. PMID 26947071 DOI: 10.1016/J.Celrep.2016.02.025  0.658
2016 Pelechano V, Wei W, Steinmetz LM. Genome-wide quantification of 5'-phosphorylated mRNA degradation intermediates for analysis of ribosome dynamics. Nature Protocols. 11: 359-76. PMID 26820793 DOI: 10.1038/Nprot.2016.026  0.648
2016 Jordán-Pla A, Miguel A, Serna E, Pelechano V, Pérez-Ortín JE. Biotin-Genomic Run-On (Bio-GRO): A High-Resolution Method for the Analysis of Nascent Transcription in Yeast. Methods in Molecular Biology (Clifton, N.J.). 1361: 125-39. PMID 26483020 DOI: 10.1007/978-1-4939-3079-1_8  0.562
2016 Wilkening S, Pelechano V, Steinmetz LM. Genome-Wide Identification of Alternative Polyadenylation Events Using 3'T-Fill. Methods in Molecular Biology (Clifton, N.J.). 1358: 295-302. PMID 26463391 DOI: 10.1007/978-1-4939-3067-8_18  0.614
2015 García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE. The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons. Nucleic Acids Research. PMID 26717982 DOI: 10.1093/Nar/Gkv1512  0.621
2015 Schmid M, Olszewski P, Pelechano V, Gupta I, Steinmetz LM, Jensen TH. The Nuclear PolyA-Binding Protein Nab2p Is Essential for mRNA Production. Cell Reports. 12: 128-39. PMID 26119729 DOI: 10.1016/J.Celrep.2015.06.008  0.632
2015 Pelechano V, Wei W, Steinmetz LM. Widespread Co-translational RNA Decay Reveals Ribosome Dynamics. Cell. 161: 1400-12. PMID 26046441 DOI: 10.1016/J.Cell.2015.05.008  0.659
2015 Chabbert CD, Adjalley SH, Klaus B, Fritsch ES, Gupta I, Pelechano V, Steinmetz LM. A high-throughput ChIP-Seq for large-scale chromatin studies. Molecular Systems Biology. 11: 777. PMID 25583149 DOI: 10.15252/Msb.20145776  0.563
2015 Jordán-Pla A, Gupta I, de Miguel-Jiménez L, Steinmetz LM, Chávez S, Pelechano V, Pérez-Ortín JE. Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle. Nucleic Acids Research. 43: 787-802. PMID 25550430 DOI: 10.1093/Nar/Gku1349  0.688
2015 Velten L, Anders S, Pekowska A, Järvelin AI, Huber W, Pelechano V, Steinmetz LM. Single-cell polyadenylation site mapping reveals 3′ isoform choice variability Molecular Systems Biology. 11. DOI: 10.15252/msb.20156198  0.501
2014 Pelechano V, Wei W, Jakob P, Steinmetz LM. Genome-wide identification of transcript start and end sites by transcript isoform sequencing. Nature Protocols. 9: 1740-59. PMID 24967623 DOI: 10.1038/Nprot.2014.121  0.678
2014 Magraner-Pardo L, Pelechano V, Coloma MD, Tordera V. Dynamic remodeling of histone modifications in response to osmotic stress in Saccharomyces cerevisiae. Bmc Genomics. 15: 247. PMID 24678875 DOI: 10.1186/1471-2164-15-247  0.312
2014 Gupta I, Clauder-Münster S, Klaus B, Järvelin AI, Aiyar RS, Benes V, Wilkening S, Huber W, Pelechano V, Steinmetz LM. Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions. Molecular Systems Biology. 10: 719. PMID 24569168 DOI: 10.1002/Msb.135068  0.705
2013 Pelechano V, Steinmetz LM. Gene regulation by antisense transcription. Nature Reviews. Genetics. 14: 880-93. PMID 24217315 DOI: 10.1038/Nrg3594  0.691
2013 Ntini E, Järvelin AI, Bornholdt J, Chen Y, Boyd M, Jørgensen M, Andersson R, Hoof I, Schein A, Andersen PR, Andersen PK, Preker P, Valen E, Zhao X, Pelechano V, et al. Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality. Nature Structural & Molecular Biology. 20: 923-8. PMID 23851456 DOI: 10.1038/Nsmb.2640  0.704
2013 Pelechano V, Wei W, Steinmetz LM. Extensive transcriptional heterogeneity revealed by isoform profiling. Nature. 497: 127-31. PMID 23615609 DOI: 10.1038/Nature12121  0.718
2013 Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM. An efficient method for genome-wide polyadenylation site mapping and RNA quantification. Nucleic Acids Research. 41: e65. PMID 23295673 DOI: 10.1093/Nar/Gks1249  0.683
2012 Pelechano V, Wilkening S, Järvelin AI, Tekkedil MM, Steinmetz LM. Genome-wide polyadenylation site mapping. Methods in Enzymology. 513: 271-96. PMID 22929774 DOI: 10.1016/B978-0-12-391938-0.00012-4  0.696
2012 Schmid M, Poulsen MB, Olszewski P, Pelechano V, Saguez C, Gupta I, Steinmetz LM, Moore C, Jensen TH. Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Molecular Cell. 47: 267-80. PMID 22683267 DOI: 10.1016/J.Molcel.2012.05.005  0.593
2012 García-Martínez J, Ayala G, Pelechano V, Chávez S, Herrero E, Pérez-Ortín JE. The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast. Transcription. 3: 39-44. PMID 22456320 DOI: 10.4161/trns.3.1.19416  0.41
2011 García-López MC, Pelechano V, Mirón-García MC, Garrido-Godino AI, García A, Calvo O, Werner M, Pérez-Ortín JE, Navarro F. The conserved foot domain of RNA pol II associates with proteins involved in transcriptional initiation and/or early elongation. Genetics. 189: 1235-48. PMID 21954159 DOI: 10.1534/genetics.111.133215  0.476
2011 Pérez-Ortín JE, Jordán-Pla A, Pelechano V. A genomic view of mRNA turnover in yeast. Comptes Rendus Biologies. 334: 647-54. PMID 21819946 DOI: 10.1016/j.crvi.2011.05.013  0.457
2011 Wei W, Pelechano V, Järvelin AI, Steinmetz LM. Functional consequences of bidirectional promoters. Trends in Genetics : Tig. 27: 267-76. PMID 21601935 DOI: 10.1016/J.Tig.2011.04.002  0.661
2011 García-Martínez J, Pelechano V, Pérez-Ortín JE. Genomic-wide methods to evaluate transcription rates in yeast. Methods in Molecular Biology (Clifton, N.J.). 734: 25-44. PMID 21468983 DOI: 10.1007/978-1-61779-086-7_2  0.524
2010 Pelechano V, Chávez S, Pérez-Ortín JE. A complete set of nascent transcription rates for yeast genes. Plos One. 5: e15442. PMID 21103382 DOI: 10.1371/journal.pone.0015442  0.55
2010 Rodríguez-Gil A, García-Martínez J, Pelechano V, Muñoz-Centeno Mde L, Geli V, Pérez-Ortín JE, Chávez S. The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors. Nucleic Acids Research. 38: 4651-64. PMID 20385590 DOI: 10.1093/nar/gkq215  0.473
2010 Pelechano V, Pérez-Ortín JE. There is a steady-state transcriptome in exponentially growing yeast cells. Yeast (Chichester, England). 27: 413-22. PMID 20301094 DOI: 10.1002/yea.1768  0.36
2009 Pelechano V, Jimeno-González S, Rodríguez-Gil A, García-Martínez J, Pérez-Ortín JE, Chávez S. Regulon-specific control of transcription elongation across the yeast genome. Plos Genetics. 5: e1000614. PMID 19696888 DOI: 10.1371/journal.pgen.1000614  0.514
2008 Pelechano V, Pérez-Ortín JE. The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast. Yeast (Chichester, England). 25: 85-92. PMID 17914747 DOI: 10.1002/YEA.1548  0.366
2006 Pelechano V, García-Martínez J, Pérez-Ortín JE. A genomic study of the inter-ORF distances in Saccharomyces cerevisiae. Yeast (Chichester, England). 23: 689-99. PMID 16845687 DOI: 10.1002/YEA.1390  0.427
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