Forest Rohwer - Publications

Affiliations: 
San Diego State University, San Diego, CA, United States 

101 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, Del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Kelly LW, Luque A, Nulton J, Paul L, ... ... Rohwer F, et al. Variability and host density independence in inductions-based estimates of environmental lysogeny. Nature Microbiology. 2: 17064. PMID 28452987 DOI: 10.1038/nmicrobiol.2017.64  0.48
2016 Cobián Güemes AG, Youle M, Cantú VA, Felts B, Nulton J, Rohwer F. Viruses as Winners in the Game of Life. Annual Review of Virology. 3: 197-214. PMID 27741409 DOI: 10.1146/annurev-virology-100114-054952  0.36
2016 Quistad SD, Lim YW, Silva GG, Nelson CE, Haas AF, Kelly LW, Edwards RA, Rohwer FL. Using viromes to predict novel immune proteins in non-model organisms. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27581878 DOI: 10.1098/rspb.2016.1200  0.48
2016 Haas AF, Fairoz MF, Kelly LW, Nelson CE, Dinsdale EA, Edwards RA, Giles S, Hatay M, Hisakawa N, Knowles B, Lim YW, Maughan H, Pantos O, Roach TN, Sanchez SE, ... ... Rohwer F, et al. Global microbialization of coral reefs. Nature Microbiology. 1: 16042. PMID 27572833 DOI: 10.1038/nmicrobiol.2016.42  0.48
2016 Quinn RA, Vermeij MJ, Hartmann AC, Galtier d'Auriac I, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F. Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27122568 DOI: 10.1098/rspb.2016.0469  0.48
2016 McDole Somera T, Bailey B, Barott K, Grasis J, Hatay M, Hilton BJ, Hisakawa N, Nosrat B, Nulton J, Silveira CB, Sullivan C, Brainard RE, Rohwer F. Energetic differences between bacterioplankton trophic groups and coral reef resistance. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27097927 DOI: 10.1098/rspb.2016.0467  0.36
2016 Smith JE, Brainard R, Carter A, Grillo S, Edwards C, Harris J, Lewis L, Obura D, Rohwer F, Sala E, Vroom PS, Sandin S. Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific. Proceedings. Biological Sciences / the Royal Society. 283. PMID 26740615 DOI: 10.1098/rspb.2015.1985  0.48
2015 Hisakawa N, Quistad SD, Hester ER, Martynova D, Maughan H, Sala E, Gavrilo MV, Rohwer F. Metagenomic and satellite analyses of red snow in the Russian Arctic. Peerj. 3: e1491. PMID 26713242 DOI: 10.7717/peerj.1491  0.48
2015 Rohwer F, Segall AM. In retrospect: A century of phage lessons. Nature. 528: 46-8. PMID 26632584 DOI: 10.1038/528046a  0.48
2015 Quinn RA, Phelan VV, Whiteson KL, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein PC, Rohwer FL. Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. The Isme Journal. PMID 26623545 DOI: 10.1038/ismej.2015.207  0.48
2015 Haas AF, Guibert M, Foerschner A, Co T, Calhoun S, George E, Hatay M, Dinsdale E, Sandin SA, Smith JE, Vermeij MJ, Felts B, Dustan P, Salamon P, Rohwer F. Can we measure beauty? Computational evaluation of coral reef aesthetics. Peerj. 3: e1390. PMID 26587350 DOI: 10.7717/peerj.1390  0.48
2015 Hester ER, Barott KL, Nulton J, Vermeij MJ, Rohwer FL. Stable and sporadic symbiotic communities of coral and algal holobionts. The Isme Journal. PMID 26555246 DOI: 10.1038/ismej.2015.190  0.48
2015 Barr JJ, Auro R, Sam-Soon N, Kassegne S, Peters G, Bonilla N, Hatay M, Mourtada S, Bailey B, Youle M, Felts B, Baljon A, Nulton J, Salamon P, Rohwer F. Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters. Proceedings of the National Academy of Sciences of the United States of America. 112: 13675-80. PMID 26483471 DOI: 10.1073/pnas.1508355112  0.48
2015 Kryshtafovych A, Moult J, Baslé A, Burgin A, Craig TK, Edwards RA, Fass D, Hartmann MD, Korycinski M, Lewis RJ, Lorimer D, Lupas AN, Newman J, Peat TS, Piepenbrink KH, ... ... Rohwer F, et al. Some of the most interesting CASP11 targets through the eyes of their authors. Proteins. PMID 26473983 DOI: 10.1002/prot.24942  0.48
2015 Reyes A, Blanton LV, Cao S, Zhao G, Manary M, Trehan I, Smith MI, Wang D, Virgin HW, Rohwer F, Gordon JI. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition. Proceedings of the National Academy of Sciences of the United States of America. 112: 11941-6. PMID 26351661 DOI: 10.1073/pnas.1514285112  0.48
2015 Roitman S, Flores-Uribe J, Philosof A, Knowles B, Rohwer F, Ignacio-Espinoza JC, Sullivan MB, Cornejo-Castillo FM, Sánchez P, Acinas SG, Dupont CL, Béjà O. Closing the gaps on the viral photosystem-I psaDCAB gene organization. Environmental Microbiology. PMID 26310718 DOI: 10.1111/1462-2920.13036  0.48
2015 Sanchez SE, Cuevas DA, Rostron JE, Liang TY, Pivaroff CG, Haynes MR, Nulton J, Felts B, Bailey BA, Salamon P, Edwards RA, Burgin AB, Segall AM, Rohwer F. Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins. Journal of Visualized Experiments : Jove. PMID 26132888 DOI: 10.3791/52854  0.48
2015 Garg N, Kapono C, Lim YW, Koyama N, Vermeij MJ, Conrad D, Rohwer F, Dorrestein PC. Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. International Journal of Mass Spectrometry. 377: 719-717. PMID 25844058 DOI: 10.1016/j.ijms.2014.06.005  0.48
2015 Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. The Isme Journal. 9: 1052. PMID 25777574 DOI: 10.1038/ismej.2014.266  0.36
2015 Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. The Isme Journal. 9: 1024-38. PMID 25514533 DOI: 10.1038/ismej.2014.234  0.48
2014 Lim YW, Haynes M, Furlan M, Robertson CE, Harris JK, Rohwer F. Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples. Journal of Visualized Experiments : Jove. PMID 25549184 DOI: 10.3791/52117  0.48
2014 Haas AF, Knowles B, Lim YW, McDole Somera T, Kelly LW, Hatay M, Rohwer F. Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology. Journal of Visualized Experiments : Jove. e52131. PMID 25407983 DOI: 10.3791/52131  0.48
2014 Zarei S, Mirtar A, Rohwer F, Salamon P. Stochastic tracking of infection in a CF lung. Plos One. 9: e111245. PMID 25360611 DOI: 10.1371/journal.pone.0111245  0.36
2014 Grasis JA, Lachnit T, Anton-Erxleben F, Lim YW, Schmieder R, Fraune S, Franzenburg S, Insua S, Machado G, Haynes M, Little M, Kimble R, Rosenstiel P, Rohwer FL, Bosch TC. Species-specific viromes in the ancestral holobiont Hydra. Plos One. 9: e109952. PMID 25343582 DOI: 10.1371/journal.pone.0109952  0.48
2014 Freeman SE, Rohwer FL, D'Spain GL, Friedlander AM, Gregg AK, Sandin SA, Buckingham MJ. The origins of ambient biological sound from coral reef ecosystems in the Line Islands archipelago. The Journal of the Acoustical Society of America. 135: 1775-88. PMID 25234977 DOI: 10.1121/1.4865922  0.48
2014 Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin SA, Smith JE, ... ... Rohwer F, et al. Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. Peerj. 2: e520. PMID 25177534 DOI: 10.7717/peerj.520  0.48
2014 Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, ... ... Rohwer F, et al. Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences of the United States of America. 111: 10227-32. PMID 24982156 DOI: 10.1073/pnas.1403319111  0.48
2014 Quistad SD, Stotland A, Barott KL, Smurthwaite CA, Hilton BJ, Grasis JA, Wolkowicz R, Rohwer FL. Evolution of TNF-induced apoptosis reveals 550 My of functional conservation. Proceedings of the National Academy of Sciences of the United States of America. 111: 9567-72. PMID 24927546 DOI: 10.1073/pnas.1405912111  0.48
2014 Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL. Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung. Mbio. 5: e00956-13. PMID 24643867 DOI: 10.1128/mBio.00956-13  0.48
2014 Lim YW, Evangelista JS, Schmieder R, Bailey B, Haynes M, Furlan M, Maughan H, Edwards R, Rohwer F, Conrad D. Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis. Journal of Clinical Microbiology. 52: 425-37. PMID 24478471 DOI: 10.1128/JCM.02204-13  0.48
2014 Whiteson KL, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F. Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation. The Isme Journal. 8: 1247-58. PMID 24401860 DOI: 10.1038/ismej.2013.229  0.48
2014 Kryshtafovych A, Moult J, Bales P, Bazan JF, Biasini M, Burgin A, Chen C, Cochran FV, Craig TK, Das R, Fass D, Garcia-Doval C, Herzberg O, Lorimer D, Luecke H, ... ... Rohwer F, et al. Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10. Proteins. 82: 26-42. PMID 24318984 DOI: 10.1002/prot.24489  0.48
2013 Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI. Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut. Proceedings of the National Academy of Sciences of the United States of America. 110: 20236-41. PMID 24259713 DOI: 10.1073/pnas.1319470110  0.48
2013 Haas AF, Nelson CE, Rohwer F, Wegley-Kelly L, Quistad SD, Carlson CA, Leichter JJ, Hatay M, Smith JE. Influence of coral and algal exudates on microbially mediated reef metabolism. Peerj. 1: e108. PMID 23882445 DOI: 10.7717/peerj.108  0.48
2013 Haas AF, Gregg AK, Smith JE, Abieri ML, Hatay M, Rohwer F. Visualization of oxygen distribution patterns caused by coral and algae. Peerj. 1: e106. PMID 23882443 DOI: 10.7717/peerj.106  0.48
2013 Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F. Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data. Plos One. 8: e64285. PMID 23737977 DOI: 10.1371/journal.pone.0064285  0.48
2013 Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proceedings of the National Academy of Sciences of the United States of America. 110: 10771-6. PMID 23690590 DOI: 10.1073/pnas.1305923110  0.48
2013 Mokili JL, Dutilh BE, Lim YW, Schneider BS, Taylor T, Haynes MR, Metzgar D, Myers CA, Blair PJ, Nosrat B, Wolfe ND, Rohwer F. Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness. Plos One. 8: e58404. PMID 23554892 DOI: 10.1371/journal.pone.0058404  0.48
2013 Frank JA, Lorimer D, Youle M, Witte P, Craig T, Abendroth J, Rohwer F, Edwards RA, Segall AM, Burgin AB. Structure and function of a cyanophage-encoded peptide deformylase. The Isme Journal. 7: 1150-60. PMID 23407310 DOI: 10.1038/ismej.2013.4  0.48
2013 Nelson CE, Goldberg SJ, Wegley Kelly L, Haas AF, Smith JE, Rohwer F, Carlson CA. Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. The Isme Journal. 7: 962-79. PMID 23303369 DOI: 10.1038/ismej.2012.161  0.48
2013 Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ. Environmental distribution of coral-associated relatives of apicomplexan parasites. The Isme Journal. 7: 444-7. PMID 23151646 DOI: 10.1038/ismej.2012.129  0.48
2013 Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F. Cystic fibrosis therapy: a community ecology perspective. American Journal of Respiratory Cell and Molecular Biology. 48: 150-6. PMID 23103995 DOI: 10.1165/rcmb.2012-0059PS  0.48
2013 Lim YW, Schmieder R, Haynes M, Willner D, Furlan M, Youle M, Abbott K, Edwards R, Evangelista J, Conrad D, Rohwer F. Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. Journal of Cystic Fibrosis : Official Journal of the European Cystic Fibrosis Society. 12: 154-64. PMID 22951208 DOI: 10.1016/j.jcf.2012.07.009  0.48
2012 Zarei S, Mirtar A, Rohwer F, Conrad DJ, Theilmann RJ, Salamon P. Mucus distribution model in a lung with cystic fibrosis. Computational and Mathematical Methods in Medicine. 2012: 970809. PMID 23118803 DOI: 10.1155/2012/970809  0.48
2012 Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, ... Rohwer F, et al. Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology. 14: 3043-65. PMID 23039259 DOI: 10.1111/j.1462-2920.2012.02891.x  0.48
2012 McDole T, Nulton J, Barott KL, Felts B, Hand C, Hatay M, Lee H, Nadon MO, Nosrat B, Salamon P, Bailey B, Sandin SA, Vargas-Angel B, Youle M, Zgliczynski BJ, ... ... Rohwer F, et al. Assessing coral reefs on a Pacific-wide scale using the microbialization score. Plos One. 7: e43233. PMID 22970122 DOI: 10.1371/journal.pone.0043233  0.48
2012 Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI. Going viral: next-generation sequencing applied to phage populations in the human gut. Nature Reviews. Microbiology. 10: 607-17. PMID 22864264 DOI: 10.1038/nrmicro2853  0.48
2012 Youle M, Rohwer F, Stacy A, Whiteley M, Steel BC, Delalez NJ, Nord AL, Berry RM, Armitage JP, Kamoun S, Hogenhout S, Diggle SP, Gurney J, Pollitt EJ, Boetius A, et al. The Microbial Olympics. Nature Reviews. Microbiology. 10: 583-8. PMID 22796885 DOI: 10.1038/nrmicro2837  0.48
2012 Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ. Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs. Current Biology : Cb. 22: R518-9. PMID 22789997 DOI: 10.1016/j.cub.2012.04.047  0.48
2012 Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW. Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research. 40: e94. PMID 22434876 DOI: 10.1093/nar/gks251  0.48
2012 Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. The Isme Journal. 6: 915-26. PMID 22158393 DOI: 10.1038/ismej.2011.169  0.48
2012 Barott KL, Rodriguez-Mueller B, Youle M, Marhaver KL, Vermeij MJ, Smith JE, Rohwer FL. Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae. Proceedings. Biological Sciences / the Royal Society. 279: 1655-64. PMID 22090385 DOI: 10.1098/rspb.2011.2155  0.48
2012 Willner D, Haynes MR, Furlan M, Hanson N, Kirby B, Lim YW, Rainey PB, Schmieder R, Youle M, Conrad D, Rohwer F. Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology. 46: 127-31. PMID 21980056 DOI: 10.1165/rcmb.2011-0253OC  0.48
2012 Kelly LW, Barott KL, Dinsdale E, Friedlander AM, Nosrat B, Obura D, Sala E, Sandin SA, Smith JE, Vermeij MJ, Williams GJ, Willner D, Rohwer F. Black reefs: iron-induced phase shifts on coral reefs. The Isme Journal. 6: 638-49. PMID 21881615 DOI: 10.1038/ismej.2011.114  0.48
2012 Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, Rohwer F, Conrad D. Spatial distribution of microbial communities in the cystic fibrosis lung. The Isme Journal. 6: 471-4. PMID 21796216 DOI: 10.1038/ismej.2011.104  0.48
2011 Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F. New abundant microbial groups in aquatic hypersaline environments. Scientific Reports. 1: 135. PMID 22355652 DOI: 10.1038/srep00135  0.48
2011 Haas AF, Nelson CE, Wegley Kelly L, Carlson CA, Rohwer F, Leichter JJ, Wyatt A, Smith JE. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. Plos One. 6: e27973. PMID 22125645 DOI: 10.1371/journal.pone.0027973  0.48
2011 Ng TF, Willner DL, Lim YW, Schmieder R, Chau B, Nilsson C, Anthony S, Ruan Y, Rohwer F, Breitbart M. Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. Plos One. 6: e20579. PMID 21674005 DOI: 10.1371/journal.pone.0020579  0.48
2011 Sharon I, Battchikova N, Aro EM, Giglione C, Meinnel T, Glaser F, Pinter RY, Breitbart M, Rohwer F, Béjà O. Comparative metagenomics of microbial traits within oceanic viral communities. The Isme Journal. 5: 1178-90. PMID 21307954 DOI: 10.1038/ismej.2011.2  0.48
2011 Barott KL, Rodriguez-Brito B, JanouÅ¡kovec J, Marhaver KL, Smith JE, Keeling P, Rohwer FL. Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environmental Microbiology. 13: 1192-204. PMID 21272183 DOI: 10.1111/j.1462-2920.2010.02419.x  0.48
2011 Alperovitch-Lavy A, Sharon I, Rohwer F, Aro EM, Glaser F, Milo R, Nelson N, Béjà O. Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets. Environmental Microbiology. 13: 24-32. PMID 20649642 DOI: 10.1111/j.1462-2920.2010.02304.x  0.48
2011 Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America. 108: 4547-53. PMID 20547834 DOI: 10.1073/pnas.1000089107  0.48
2010 Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, Gordon JI. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 466: 334-8. PMID 20631792 DOI: 10.1038/nature09199  0.48
2010 Barott KL, Caselle JE, Dinsdale EA, Friedlander AM, Maragos JE, Obura D, Rohwer FL, Sandin SA, Smith JE, Zgliczynski B. The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem. Plos One. 5: e10950. PMID 20539746 DOI: 10.1371/journal.pone.0010950  0.48
2010 He S, Kunin V, Haynes M, Martin HG, Ivanova N, Rohwer F, Hugenholtz P, McMahon KD. Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environmental Microbiology. 12: 1205-17. PMID 20148930 DOI: 10.1111/j.1462-2920.2010.02163.x  0.48
2010 Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, ... ... Rohwer F, et al. Viral and microbial community dynamics in four aquatic environments. The Isme Journal. 4: 739-51. PMID 20147985 DOI: 10.1038/ismej.2010.1  0.48
2009 Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, ... ... Rohwer F, et al. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. Plos Computational Biology. 5: e1000593. PMID 20011103 DOI: 10.1371/journal.pcbi.1000593  0.48
2009 Barott K, Smith J, Dinsdale E, Hatay M, Sandin S, Rohwer F. Hyperspectral and Physiological Analyses of Coral-Algal Interactions Plos One. 4. PMID 19956632 DOI: 10.1371/journal.pone.0008043  0.48
2009 Pasić L, Rodriguez-Mueller B, Martin-Cuadrado AB, Mira A, Rohwer F, Rodriguez-Valera F. Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber. Bmc Genomics. 10: 570. PMID 19951421 DOI: 10.1186/1471-2164-10-570  0.48
2009 Rodriguez-Valera F, Martin-Cuadrado AB, Rodriguez-Brito B, Pasić L, Thingstad TF, Rohwer F, Mira A. Explaining microbial population genomics through phage predation. Nature Reviews. Microbiology. 7: 828-36. PMID 19834481 DOI: 10.1038/nrmicro2235  0.48
2009 Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI, Nelson N, Béjà O. Photosystem I gene cassettes are present in marine virus genomes. Nature. 461: 258-62. PMID 19710652 DOI: 10.1038/nature08284  0.48
2009 Angly F, Youle M, Nosrat B, Srinagesh S, Rodriguez-Brito B, McNairnie P, Deyanat-Yazdi G, Breitbart M, Rohwer F. Genomic analysis of multiple Roseophage SIO1 strains. Environmental Microbiology. 11: 2863-73. PMID 19659499 DOI: 10.1111/j.1462-2920.2009.02021.x  0.48
2009 Rohwer F, Thurber RV. Viruses manipulate the marine environment. Nature. 459: 207-12. PMID 19444207 DOI: 10.1038/nature08060  0.48
2009 Thurber RV, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly F, Dinsdale E, Kelly L, Rohwer F. Metagenomic analysis of stressed coral holobionts Environmental Microbiology. 11: 2148-2163. PMID 19397678 DOI: 10.1111/j.1462-2920.2009.01935.x  0.48
2009 Willner D, Thurber RV, Rohwer F. Metagenomic signatures of 86 microbial and viral metagenomes. Environmental Microbiology. 11: 1752-66. PMID 19302541 DOI: 10.1111/j.1462-2920.2009.01901.x  0.48
2009 Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F. Laboratory procedures to generate viral metagenomes. Nature Protocols. 4: 470-83. PMID 19300441 DOI: 10.1038/nprot.2009.10  0.48
2009 Breitbart M, Hoare A, Nitti A, Siefert J, Haynes M, Dinsdale E, Edwards R, Souza V, Rohwer F, Hollander D. Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico. Environmental Microbiology. 11: 16-34. PMID 18764874 DOI: 10.1111/j.1462-2920.2008.01725.x  0.48
2008 McDaniel L, Breitbart M, Mobberley J, Long A, Haynes M, Rohwer F, Paul JH. Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression. Plos One. 3: e3263. PMID 18810270 DOI: 10.1371/journal.pone.0003263  0.48
2008 Breitbart M, Haynes M, Kelley S, Angly F, Edwards RA, Felts B, Mahaffy JM, Mueller J, Nulton J, Rayhawk S, Rodriguez-Brito B, Salamon P, Rohwer F. Viral diversity and dynamics in an infant gut. Research in Microbiology. 159: 367-73. PMID 18541415 DOI: 10.1016/j.resmic.2008.04.006  0.48
2008 Marhaver KL, Edwards RA, Rohwer F. Viral communities associated with healthy and bleaching corals Environmental Microbiology. 10: 2277-2286. PMID 18479440 DOI: 10.1111/j.1462-2920.2008.01652.x  0.48
2008 Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, ... ... Rohwer F, et al. Functional metagenomic profiling of nine biomes. Nature. 452: 629-32. PMID 18337718 DOI: 10.1038/nature06810  0.48
2008 Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, ... ... Rohwer F, et al. Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature. 452: 340-3. PMID 18311127 DOI: 10.1038/nature06735  0.48
2008 Kunin V, He S, Warnecke F, Peterson SB, Garcia Martin H, Haynes M, Ivanova N, Blackall LL, Breitbart M, Rohwer F, McMahon KD, Hugenholtz P. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Research. 18: 293-7. PMID 18077539 DOI: 10.1101/gr.6835308  0.48
2007 Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Applied and Environmental Microbiology. 73: 7059-66. PMID 17827313 DOI: 10.1128/AEM.00358-07  0.48
2007 Hoffmann KH, Rodriguez-Brito B, Breitbart M, Bangor D, Angly F, Felts B, Nulton J, Rohwer F, Salamon P. Power law rank-abundance models for marine phage communities. Fems Microbiology Letters. 273: 224-8. PMID 17559407 DOI: 10.1111/j.1574-6968.2007.00790.x  0.48
2006 Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, ... ... Rohwer F, et al. The marine viromes of four oceanic regions. Plos Biology. 4: e368. PMID 17090214 DOI: 10.1371/journal.pbio.0040368  0.48
2006 Casas V, Miyake J, Balsley H, Roark J, Telles S, Leeds S, Zurita I, Breitbart M, Bartlett D, Azam F, Rohwer F. Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California. Fems Microbiology Letters. 261: 141-9. PMID 16842371 DOI: 10.1111/j.1574-6968.2006.00345.x  0.48
2006 Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC, Rohwer F. Using pyrosequencing to shed light on deep mine microbial ecology. Bmc Genomics. 7: 57. PMID 16549033 DOI: 10.1186/1471-2164-7-57  0.48
2006 Yu Y, Breitbart M, McNairnie P, Rohwer F. FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. Bmc Bioinformatics. 7: 57. PMID 16464253 DOI: 10.1186/1471-2105-7-57  0.48
2006 Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, Hibberd ML, Liu ET, Rohwer F, Ruan Y. RNA viral community in human feces: prevalence of plant pathogenic viruses. Plos Biology. 4: e3. PMID 16336043 DOI: 10.1371/journal.pbio.0040003  0.48
2005 Breitbart M, Rohwer F. Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques. 39: 729-36. PMID 16312220 DOI: 10.2144/000112019  0.48
2005 Breitbart M, Rohwer F. Here a virus, there a virus, everywhere the same virus? Trends in Microbiology. 13: 278-84. PMID 15936660 DOI: 10.1016/j.tim.2005.04.003  0.48
2005 Angly F, Rodriguez-Brito B, Bangor D, McNairnie P, Breitbart M, Salamon P, Felts B, Nulton J, Mahaffy J, Rohwer F. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. Bmc Bioinformatics. 6: 41. PMID 15743531 DOI: 10.1186/1471-2105-6-41  0.48
2005 Breitbart M, Bhagooli R, Griffin S, Johnston I, Rohwer F. Microbial communities associated with skeletal tumors on Porites compressa. Fems Microbiology Letters. 243: 431-6. PMID 15686846 DOI: 10.1016/j.femsle.2005.01.004  0.48
2004 Casas V, Kline DI, Wegley L, Yu Y, Breitbart M, Rohwer F. Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environmental Microbiology. 6: 1137-48. PMID 15479247 DOI: 10.1111/j.1462-2920.2004.00647.x  0.48
2004 Breitbart M, Miyake JH, Rohwer F. Global distribution of nearly identical phage-encoded DNA sequences. Fems Microbiology Letters. 236: 249-56. PMID 15251204 DOI: 10.1016/j.femsle.2004.05.042  0.48
2004 Breitbart M, Felts B, Kelley S, Mahaffy JM, Nulton J, Salamon P, Rohwer F. Diversity and population structure of a near-shore marine-sediment viral community. Proceedings. Biological Sciences / the Royal Society. 271: 565-74. PMID 15156913 DOI: 10.1098/rspb.2003.2628  0.48
2004 Breitbart M, Wegley L, Leeds S, Schoenfeld T, Rohwer F. Phage community dynamics in hot springs. Applied and Environmental Microbiology. 70: 1633-40. PMID 15006788 DOI: 10.1128/AEM.70.3.1633-1640.2004  0.48
2003 Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P, Rohwer F. Metagenomic analyses of an uncultured viral community from human feces. Journal of Bacteriology. 185: 6220-3. PMID 14526037 DOI: 10.1128/JB.185.20.6220-6223.2003  0.48
2003 Fung MM, Rohwer F, McGuire KL. IL-2 activation of a PI3K-dependent STAT3 serine phosphorylation pathway in primary human T cells. Cellular Signalling. 15: 625-36. PMID 12681450 DOI: 10.1016/S0898-6568(03)00003-2  0.48
2002 Breitbart M, Salamon P, Andresen B, Mahaffy JM, Segall AM, Mead D, Azam F, Rohwer F. Genomic analysis of uncultured marine viral communities. Proceedings of the National Academy of Sciences of the United States of America. 99: 14250-5. PMID 12384570 DOI: 10.1073/pnas.202488399  0.48
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