Jianrong Wang - Publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Tai YY, Yu Q, Tang Y, Sun W, Kelly NJ, Okawa S, Zhao J, Schwantes-An TH, Lacoux C, Torrino S, Al Aaraj Y, El Khoury W, Negi V, Liu M, Corey CG, ... ... Wang J, et al. Allele-specific control of rodent and human lncRNA KMT2E-AS1 promotes hypoxic endothelial pathology in pulmonary hypertension. Science Translational Medicine. 16: eadd2029. PMID 38198571 DOI: 10.1126/scitranslmed.add2029  0.306
2023 Das Adhikari S, Cui Y, Wang J. BayesKAT: Bayesian Optimal Kernel-based Test for genetic association studies reveals joint genetic effects in complex diseases. Biorxiv : the Preprint Server For Biology. PMID 37905124 DOI: 10.1101/2023.10.18.562824  0.335
2021 Wang J, Song H, Zhang Y. Comprehensive analysis of gene expression and DNA methylation for preeclampsia progression. Journal of the Chinese Medical Association : Jcma. PMID 33595987 DOI: 10.1097/JCMA.0000000000000499  0.315
2021 Wang H, Yang J, Wang J. Leverage Large-Scale Biological Networks to Decipher the Genetic Basis of Human Diseases Using Machine Learning. Methods in Molecular Biology (Clifton, N.J.). 2190: 229-248. PMID 32804369 DOI: 10.1007/978-1-0716-0826-5_11  0.396
2020 Wang H, Yang J, Zhang Y, Wang J. Discover novel disease-associated genes based on regulatory networks of long-range chromatin interactions. Methods (San Diego, Calif.). PMID 33096239 DOI: 10.1016/j.ymeth.2020.10.010  0.332
2019 Chen J, Shang J, Wang J, Sun Y. A binning tool to reconstruct viral haplotypes from assembled contigs. Bmc Bioinformatics. 20: 544. PMID 31684876 DOI: 10.1186/S12859-019-3138-1  0.403
2018 Rishishwar L, Wang L, Wang J, Yi SV, Lachance J, King Jordan I. Evidence for positive selection on recent human transposable element insertions. Gene. PMID 29953920 DOI: 10.1016/J.Gene.2018.06.077  0.516
2018 Shao F, Wang J, Xu H, Peng Z. FishTEDB: a collective database of transposable elements identified in the complete genomes of fish. Database : the Journal of Biological Databases and Curation. 2018. PMID 29688350 DOI: 10.1093/Database/Bax106  0.364
2017 Marco E, Meuleman W, Huang J, Glass K, Pinello L, Wang J, Kellis M, Yuan GC. Multi-scale chromatin state annotation using a hierarchical hidden Markov model. Nature Communications. 8: 15011. PMID 28387224 DOI: 10.1038/Ncomms15011  0.739
2016 Clayton EA, Wang L, Rishishwar L, Wang J, McDonald JF, Jordan IK. Patterns of Transposable Element Expression and Insertion in Cancer. Frontiers in Molecular Biosciences. 3: 76. PMID 27900322 DOI: 10.3389/Fmolb.2016.00076  0.426
2015 Wang J, Vicente-García C, Seruggia D, Moltó E, Fernandez-Miñán A, Neto A, Lee E, Gómez-Skarmeta JL, Montoliu L, Lunyak VV, Jordan IK. MIR retrotransposon sequences provide insulators to the human genome. Proceedings of the National Academy of Sciences of the United States of America. 112: E4428-37. PMID 26216945 DOI: 10.1073/Pnas.1507253112  0.384
2014 Jjingo D, Conley AB, Wang J, Mariño-Ramírez L, Lunyak VV, Jordan IK. Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression. Mobile Dna. 5: 14. PMID 25018785 DOI: 10.1186/1759-8753-5-14  0.359
2014 Niu YN, Liu QQ, Zhang SP, Yuan N, Cao Y, Cai JY, Lin WW, Xu F, Wang ZJ, Chen B, Wang JR. Alternative messenger RNA splicing of autophagic gene Beclin 1 in human B-cell acute lymphoblastic leukemia cells. Asian Pacific Journal of Cancer Prevention : Apjcp. 15: 2153-8. PMID 24716949 DOI: 10.7314/APJCP.2014.15.5.2153  0.303
2013 Jjingo D, Wang J, Conley AB, Lunyak VV, Jordan IK, Birol I. Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome Bioinformatics. 29: 3109-3112. PMID 24085569 DOI: 10.1093/Bioinformatics/Btt542  0.428
2013 Xu K, Wang J, Elango N, Yi SV. The evolution of lineage-specific clusters of single nucleotide substitutions in the human genome. Molecular Phylogenetics and Evolution. 69: 276-85. PMID 23770436 DOI: 10.1016/J.Ympev.2013.06.003  0.487
2013 Wang J, Lunyak VV, Jordan IK. BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets. Bioinformatics (Oxford, England). 29: 492-3. PMID 23300134 DOI: 10.1093/Bioinformatics/Bts722  0.36
2012 Wang J, Lunyak VV, Jordan IK. Chromatin signature discovery via histone modification profile alignments. Nucleic Acids Research. 40: 10642-56. PMID 22989711 DOI: 10.1093/Nar/Gks848  0.505
2012 Blackwell BJ, Lopez MF, Wang J, Krastins B, Sarracino D, Tollervey JR, Dobke M, Jordan IK, Lunyak VV. Protein interactions with piALU RNA indicates putative participation of retroRNA in the cell cycle, DNA repair and chromatin assembly. Mobile Genetic Elements. 2: 26-35. PMID 22754750 DOI: 10.4161/Mge.19032  0.424
2012 Wang J, Lunyak VV, Jordan IK. Genome-wide prediction and analysis of human chromatin boundary elements. Nucleic Acids Research. 40: 511-29. PMID 21930510 DOI: 10.1093/Nar/Gkr750  0.455
2011 Wang J, Geesman GJ, Hostikka SL, Atallah M, Blackwell B, Lee E, Cook PJ, Pasaniuc B, Shariat G, Halperin E, Dobke M, Rosenfeld MG, Jordan IK, Lunyak VV. Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal. Cell Cycle (Georgetown, Tex.). 10: 3016-30. PMID 21862875 DOI: 10.4161/Cc.10.17.17543  0.428
2010 Wang J, Huda A, Lunyak VV, Jordan IK. A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags. Bioinformatics (Oxford, England). 26: 2501-8. PMID 20871106 DOI: 10.1093/Bioinformatics/Btq460  0.353
2009 Wang J, Bowen NJ, Mariño-Ramírez L, Jordan IK. A c-Myc regulatory subnetwork from human transposable element sequences Molecular Biosystems. 5: 1831-1839. PMID 19763338 DOI: 10.1039/B908494K  0.355
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