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Petros Koumoutsakos - Publications

Affiliations: 
Chair of Computational Science Eidgenössische Technische Hochschule Zürich, Zürich, ZH, Switzerland 
Area:
Computational Science, Numerical Methods, Supercomputing, Fluid Mechanics, Nanotechnology, Life Sciences
Website:
https://mavt.ethz.ch/the-department/people/person-detail.Nzk1NDg=.TGlzdC81NTksLTY5MzYxOTMw.html
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143 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Papadopoulou E, Megaridis CM, Walther JH, Koumoutsakos P. Nanopumps without Pressure Gradients: Ultrafast Transport of Water in Patterned Nanotubes. The Journal of Physical Chemistry. B. 126: 660-669. PMID 35081713 DOI: 10.1021/acs.jpcb.1c07562  0.598
2020 Brunton SL, Noack BR, Koumoutsakos P. Machine Learning for Fluid Mechanics Annual Review of Fluid Mechanics. 52: 477-508. DOI: 10.1146/Annurev-Fluid-010719-060214  0.324
2020 Wan ZY, Karnakov P, Koumoutsakos P, Sapsis TP. Bubbles in turbulent flows: Data-driven, kinematic models with history terms International Journal of Multiphase Flow. 129: 103286. DOI: 10.1016/J.Ijmultiphaseflow.2020.103286  0.354
2020 Karnakov P, Litvinov S, Koumoutsakos P. A hybrid particle volume-of-fluid method for curvature estimation in multiphase flows International Journal of Multiphase Flow. 125: 103209. DOI: 10.1016/J.Ijmultiphaseflow.2020.103209  0.422
2020 Alexeev D, Amoudruz L, Litvinov S, Koumoutsakos P. Mirheo: High-performance mesoscale simulations for microfluidics Computer Physics Communications. 254: 107298. DOI: 10.1016/J.Cpc.2020.107298  0.381
2019 Larson K, Bowman C, Papadimitriou C, Koumoutsakos P, Matzavinos A. Detection of arterial wall abnormalities via Bayesian model selection. Royal Society Open Science. 6: 182229. PMID 31824680 DOI: 10.1098/Rsos.182229  0.301
2019 Papadopoulou E, Megaridis CM, Walther JH, Koumoutsakos P. Ultrafast Propulsion of Water Nano-Droplets on Patterned Graphene. Acs Nano. PMID 31025854 DOI: 10.1021/Acsnano.9B00252  0.595
2019 Zavadlav J, Arampatzis G, Koumoutsakos P. Bayesian selection for coarse-grained models of liquid water. Scientific Reports. 9: 99. PMID 30643172 DOI: 10.1038/S41598-018-37471-0  0.318
2019 H. Hashemi SM, Karnakov P, Hadikhani P, Chinello E, Litvinov S, Moser C, Koumoutsakos P, Psaltis D. A versatile and membrane-less electrochemical reactor for the electrolysis of water and brine Energy & Environmental Science. 12: 1592-1604. DOI: 10.1039/C9Ee00219G  0.305
2019 Dietsche C, Mutlu BR, Edd JF, Koumoutsakos P, Toner M. Dynamic particle ordering in oscillatory inertial microfluidics Microfluidics and Nanofluidics. 23. DOI: 10.1007/S10404-019-2242-X  0.311
2018 Lipková J, Arampatzis G, Chatelain P, Menze B, Koumoutsakos P. S-Leaping: An Adaptive, Accelerated Stochastic Simulation Algorithm, Bridging [Formula: see text]-Leaping and R-Leaping. Bulletin of Mathematical Biology. PMID 29992453 DOI: 10.1007/S11538-018-0464-9  0.674
2018 Verma S, Novati G, Koumoutsakos P. Efficient collective swimming by harnessing vortices through deep reinforcement learning. Proceedings of the National Academy of Sciences of the United States of America. PMID 29784820 DOI: 10.1073/Pnas.1800923115  0.343
2018 Sukys J, Rasthofer U, Wermelinger F, Hadjidoukas PE, Koumoutsakos P. Multilevel Control Variates for Uncertainty Quantification in Simulations of Cloud Cavitation Siam Journal On Scientific Computing. 40. DOI: 10.1137/17M1129684  0.334
2018 Wermelinger F, Rasthofer U, Hadjidoukas PE, Koumoutsakos P. Petascale simulations of compressible flows with interfaces Journal of Computational Science. 26: 217-225. DOI: 10.1016/J.Jocs.2018.01.008  0.408
2017 Cruz-Chú ER, Papadopoulou E, Walther JH, Popadić A, Li G, Praprotnik M, Koumoutsakos P. On phonons and water flow enhancement in carbon nanotubes. Nature Nanotechnology. 12: 1106-1108. PMID 29209010 DOI: 10.1038/Nnano.2017.234  0.636
2017 Kulakova L, Arampatzis G, Angelikopoulos P, Hadjidoukas P, Papadimitriou C, Koumoutsakos P. Data driven inference for the repulsive exponent of the Lennard-Jones potential in molecular dynamics simulations. Scientific Reports. 7: 16576. PMID 29185461 DOI: 10.1038/S41598-017-16314-4  0.336
2017 Oyarzua E, Walther JH, Megaridis CM, Koumoutsakos P, Zambrano HA. Carbon Nanotubes as Thermally-Induced Water Pumps. Acs Nano. PMID 28953353 DOI: 10.1021/Acsnano.7B04177  0.775
2017 Novati G, Verma S, Alexeev D, Rossinelli D, van Rees WM, Koumoutsakos P. Synchronisation through learning for two self-propelled swimmers. Bioinspiration & Biomimetics. 12: 036001. PMID 28355166 DOI: 10.1088/1748-3190/Aa6311  0.318
2017 Nizzero S, Litvinov S, Alexeev D, Economides A, Rosa ED, Wolfram J, Koumoutsakos P, Ferrari M. Abstract B04: From modeling to in vivo tracking: a new platform for the design of delivery vectors that exploit tumor microfluidics Cancer Research. 77. DOI: 10.1158/1538-7445.Epso16-B04  0.31
2017 Verma S, Abbati G, Novati G, Koumoutsakos P. Computing the force distribution on the surface of complex, deforming geometries using vortex methods and Brinkman penalization International Journal For Numerical Methods in Fluids. 85: 484-501. DOI: 10.1002/Fld.4392  0.396
2016 Wu S, Angelikopoulos P, Tauriello G, Papadimitriou C, Koumoutsakos P. Fusing heterogeneous data for the calibration of molecular dynamics force fields using hierarchical Bayesian models. The Journal of Chemical Physics. 145: 244112. PMID 28049338 DOI: 10.1063/1.4967956  0.342
2016 Chen J, Walther JH, Koumoutsakos P. Ultrafast cooling by covalently bonded graphene-carbon nanotube hybrid immersed in water. Nanotechnology. 27: 465705. PMID 27758979 DOI: 10.1088/0957-4484/27/46/465705  0.603
2016 Wu S, Angelikopoulos P, Papadimitriou C, Moser R, Koumoutsakos P. A hierarchical Bayesian framework for force field selection in molecular dynamics simulations. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 374. PMID 26712642 DOI: 10.1098/Rsta.2015.0032  0.352
2016 Gazzola M, Tchieu AA, Alexeev D, Brauer Ad, Koumoutsakos P. Learning to school in the presence of hydrodynamic interactions Journal of Fluid Mechanics. 789: 726-749. DOI: 10.1017/Jfm.2015.686  0.746
2015 Jones PR, Hao X, Cruz-Chu ER, Rykaczewski K, Nandy K, Schutzius TM, Varanasi KK, Megaridis CM, Walther JH, Koumoutsakos P, Espinosa HD, Patankar NA. Sustaining dry surfaces under water. Scientific Reports. 5: 12311. PMID 26282732 DOI: 10.1038/Srep12311  0.596
2015 Alexeev D, Chen J, Walther JH, Giapis KP, Angelikopoulos P, Koumoutsakos P. On the Kapitza Resistance Between Few-Layer Graphene and Water: Liquid Layering Effects. Nano Letters. PMID 26274389 DOI: 10.1021/Acs.Nanolett.5B03024  0.588
2015 Popadić A, Praprotnik M, Koumoutsakos P, Walther JH. Continuum simulations of water flow past fullerene molecules The European Physical Journal Special Topics. 224: 2321-2330. DOI: 10.1140/Epjst/E2015-02414-Y  0.675
2015 Rees WMv, Novati G, Koumoutsakos P. Self-propulsion of a counter-rotating cylinder pair in a viscous fluid Physics of Fluids. 27: 63102. DOI: 10.1063/1.4922314  0.332
2015 Huhn F, van Rees WM, Gazzola M, Rossinelli D, Haller G, Koumoutsakos P. Quantitative flow analysis of swimming dynamics with coherent lagrangian vortices Chaos. 25. DOI: 10.1063/1.4919784  0.39
2015 Rees WMv, Gazzola M, Koumoutsakos P. Optimal morphokinematics for undulatory swimmers at intermediate Reynolds numbers Journal of Fluid Mechanics. 775: 178-188. DOI: 10.1017/Jfm.2015.283  0.338
2015 Rossinelli D, Hejazialhosseini B, Rees WMv, Gazzola M, Bergdorf M, Koumoutsakos P. MRAG-I2D: Multi-resolution adapted grids for remeshed vortex methods on multicore architectures Journal of Computational Physics. 288: 1-18. DOI: 10.1016/J.Jcp.2015.01.035  0.382
2015 Hadjidoukas PE, Angelikopoulos P, Papadimitriou C, Koumoutsakos P. Π4U: A high performance computing framework for Bayesian uncertainty quantification of complex models Journal of Computational Physics. 284: 1-21. DOI: 10.1016/J.Jcp.2014.12.006  0.344
2015 Tauriello G, Koumoutsakos P. A comparative study of penalization and phase field methods for the solution of the diffusion equation in complex geometries Journal of Computational Physics. 283: 388-407. DOI: 10.1016/J.Jcp.2014.11.033  0.333
2015 Hejlesen MM, Koumoutsakos P, Leonard A, Walther JH. Iterative Brinkman penalization for remeshed vortex methods Journal of Computational Physics. 280: 547-562. DOI: 10.1016/J.Jcp.2014.09.029  0.712
2015 Angelikopoulos P, Papadimitriou C, Koumoutsakos P. X-TMCMC: Adaptive kriging for Bayesian inverse modeling Computer Methods in Applied Mechanics and Engineering. 289: 409-428. DOI: 10.1016/J.Cma.2015.01.015  0.341
2015 Chen J, Walther JH, Koumoutsakos P. Covalently Bonded Graphene-Carbon Nanotube Hybrid for High-Performance Thermal Interfaces Advanced Functional Materials. 25: 7539-7545. DOI: 10.1002/Adfm.201501593  0.583
2014 Chen J, Walther JH, Koumoutsakos P. Strain engineering of Kapitza resistance in few-layer graphene. Nano Letters. 14: 819-25. PMID 24428130 DOI: 10.1021/Nl404182K  0.551
2014 Cruz-Chu ER, Malafeev A, Pajarskas T, Pivkin IV, Koumoutsakos P. Structure and response to flow of the glycocalyx layer. Biophysical Journal. 106: 232-43. PMID 24411255 DOI: 10.1016/J.Bpj.2013.09.060  0.321
2014 Gazzola M, Hejazialhosseini B, Koumoutsakos P. Reinforcement Learning and Wavelet Adapted Vortex Methods for Simulations of Self-propelled Swimmers Siam Journal On Scientific Computing. 36: B622-B639. DOI: 10.1137/130943078  0.359
2014 Popadić A, Walther JH, Koumoutsakos P, Praprotnik M. Continuum simulations of water flow in carbon nanotube membranes New Journal of Physics. 16: 82001. DOI: 10.1088/1367-2630/16/8/082001  0.686
2014 Hadjidoukas PE, Angelikopoulos P, Rossinelli D, Alexeev D, Papadimitriou C, Koumoutsakos P. Bayesian uncertainty quantification and propagation for discrete element simulations of granular materials Computer Methods in Applied Mechanics and Engineering. 282: 218-238. DOI: 10.1016/J.Cma.2014.07.017  0.349
2014 Milde F, Tauriello G, Haberkern H, Koumoutsakos P. SEM++: A particle model of cellular growth, signaling and migration Computational Particle Mechanics. 1: 211-227. DOI: 10.1007/S40571-014-0017-4  0.303
2013 Angelikopoulos P, Papadimitriou C, Koumoutsakos P. Data driven, predictive molecular dynamics for nanoscale flow simulations under uncertainty. The Journal of Physical Chemistry. B. 117: 14808-16. PMID 24161163 DOI: 10.1021/Jp4084713  0.366
2013 Walther JH, Ritos K, Cruz-Chu ER, Megaridis CM, Koumoutsakos P. Barriers to superfast water transport in carbon nanotube membranes. Nano Letters. 13: 1910-4. PMID 23521014 DOI: 10.1021/Nl304000K  0.63
2013 Tauriello G, Koumoutsakos P. Coupling Remeshed Particle and Phase Field Methods for the Simulation of Reaction-Diffusion on the Surface and the Interior of Deforming Geometries Siam Journal On Scientific Computing. 35. DOI: 10.1137/130906441  0.334
2013 Hejazialhosseini B, Rossinelli D, Koumoutsakos P. 3D shock-bubble interaction Physics of Fluids. 25: 91105. DOI: 10.1063/1.4820017  0.358
2013 Hejazialhosseini B, Rossinelli D, Koumoutsakos P. Vortex dynamics in 3D shock-bubble interaction Physics of Fluids. 25: 110816. DOI: 10.1063/1.4819345  0.325
2013 Koumoutsakos P, Feigelman J. Multiscale stochastic simulations of chemical reactions with regulated scale separation Journal of Computational Physics. 244: 290-297. DOI: 10.1016/J.Jcp.2012.11.030  0.35
2012 Angelikopoulos P, Papadimitriou C, Koumoutsakos P. Bayesian uncertainty quantification and propagation in molecular dynamics simulations: A high performance computing framework Journal of Chemical Physics. 137. PMID 23061835 DOI: 10.1063/1.4757266  0.359
2012 Paolucci M, Kossman D, Conte R, Lukowicz P, Argyrakis P, Blandford A, Bonelli G, Anderson S, de Freitas S, Edmonds B, Gilbert N, Gross M, Kohlhammer J, Koumoutsakos P, Krause A, et al. Towards a living earth simulator The European Physical Journal Special Topics. 214: 77-108. DOI: 10.1140/Epjst/E2012-01689-8  0.327
2012 Rees WMv, Hussain F, Koumoutsakos P. Vortex tube reconnection at Re = 104 Physics of Fluids. 24: 75105. DOI: 10.1063/1.4731809  0.372
2012 Gazzola M, Mimeau C, Tchieu AA, Koumoutsakos P. Flow mediated interactions between two cylinders at finite Re numbers Physics of Fluids. 24: 43103. DOI: 10.1063/1.4704195  0.792
2012 Gazzola M, Rees WMV, Koumoutsakos P. C-start: optimal start of larval fish Journal of Fluid Mechanics. 698: 5-18. DOI: 10.1017/Jfm.2011.558  0.329
2012 Walther JH, Praprotnik M, Kotsalis EM, Koumoutsakos P. Multiscale simulation of water flow past a C540 fullerene Journal of Computational Physics. 231: 2677-2681. DOI: 10.1016/J.Jcp.2011.12.015  0.666
2012 Conti C, Rossinelli D, Koumoutsakos P. GPU and APU computations of Finite Time Lyapunov Exponent fields Journal of Computational Physics. 231: 2229-2244. DOI: 10.1016/J.Jcp.2011.10.032  0.325
2011 Rossinelli D, Conti C, Koumoutsakos P. Mesh-particle interpolations on graphics processing units and multicore central processing units. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 369: 2164-75. PMID 21536562 DOI: 10.1098/Rsta.2011.0074  0.323
2011 Koumoutsakos P, Bayati B, Milde F, Tauriello G. Particle simulations of morphogenesis Mathematical Models and Methods in Applied Sciences. 21: 955-1006. DOI: 10.1142/S021820251100543X  0.356
2011 Rossinelli D, Hejazialhosseini B, Spampinato DG, Koumoutsakos P. Multicore/Multi-GPU Accelerated Simulations of Multiphase Compressible Flows Using Wavelet Adapted Grids Siam Journal On Scientific Computing. 33: 512-540. DOI: 10.1137/100795930  0.385
2011 Gazzola M, Chatelain P, Rees WMv, Koumoutsakos P. Simulations of single and multiple swimmers with non-divergence free deforming geometries Journal of Computational Physics. 230: 7093-7114. DOI: 10.1016/J.Jcp.2011.04.025  0.725
2011 van Rees WM, Leonard A, Pullin DI, Koumoutsakos P. A comparison of vortex and pseudo-spectral methods for the simulation of periodic vortical flows at high Reynolds numbers Journal of Computational Physics. 230: 2794-2805. DOI: 10.1016/J.Jcp.2010.11.031  0.59
2011 Bayati B, Chatelain P, Koumoutsakos P. Adaptive mesh refinement for stochastic reaction-diffusion processes Journal of Computational Physics. 230: 13-26. DOI: 10.1016/J.Jcp.2010.08.035  0.668
2011 Gazzola M, Vasilyev OV, Koumoutsakos P. Shape optimization for drag reduction in linked bodies using evolution strategies Computers and Structures. 89: 1224-1231. DOI: 10.1016/J.Compstruc.2010.09.001  0.382
2010 Hanasaki I, Walther JH, Kawano S, Koumoutsakos P. Coarse-grained molecular dynamics simulations of shear-induced instabilities of lipid bilayer membranes in water. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 051602. PMID 21230483 DOI: 10.1103/Physreve.82.051602  0.601
2010 Bayati B, Owhadi H, Koumoutsakos P. A cutoff phenomenon in accelerated stochastic simulations of chemical kinetics via flow averaging (FLAVOR-SSA). The Journal of Chemical Physics. 133: 244117. PMID 21197986 DOI: 10.1063/1.3518419  0.404
2010 Bergdorf M, Sbalzarini IF, Koumoutsakos P. A Lagrangian particle method for reaction-diffusion systems on deforming surfaces. Journal of Mathematical Biology. 61: 649-63. PMID 20020130 DOI: 10.1007/S00285-009-0315-2  0.323
2010 Morra G, Yuen DA, Boschi L, Chatelain P, Koumoutsakos P, Tackley PJ. The fate of the slabs interacting with a density/viscosity hill in the mid-mantle Physics of the Earth and Planetary Interiors. 180: 271-282. DOI: 10.1016/J.Pepi.2010.04.001  0.662
2010 Hejazialhosseini B, Rossinelli D, Bergdorf M, Koumoutsakos P. High order finite volume methods on wavelet-adapted grids with local time-stepping on multicore architectures for the simulation of shock-bubble interactions Journal of Computational Physics. 229: 8364-8383. DOI: 10.1016/J.Jcp.2010.07.021  0.361
2010 Rossinelli D, Bergdorf M, Cottet G, Koumoutsakos P. GPU accelerated simulations of bluff body flows using vortex particle methods Journal of Computational Physics. 229: 3316-3333. DOI: 10.1016/J.Jcp.2010.01.004  0.421
2010 Chatelain P, Koumoutsakos P. Short Note: A Fourier-based elliptic solver for vortical flows with periodic and unbounded directions Journal of Computational Physics. 229: 2425-2431. DOI: 10.1016/J.Jcp.2009.12.035  0.725
2010 Kotsalis E, Hanasaki I, Walther J, Koumoutsakos P. Non-periodic Molecular Dynamics simulations of coarse grained lipid bilayer in water Computers & Mathematics With Applications. 59: 2370-2373. DOI: 10.1016/J.Camwa.2009.08.054  0.64
2009 Kotsalis EM, Walther JH, Kaxiras E, Koumoutsakos P. Control algorithm for multiscale flow simulations of water. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 045701. PMID 19518294 DOI: 10.1103/Physreve.79.045701  0.662
2009 Mjolsness E, Orendorff D, Chatelain P, Koumoutsakos P. An exact accelerated stochastic simulation algorithm. The Journal of Chemical Physics. 130: 144110. PMID 19368432 DOI: 10.1063/1.3078490  0.68
2009 Zambrano HA, Walther JH, Koumoutsakos P, Sbalzarini IF. Thermophoretic motion of water nanodroplets confined inside carbon nanotubes. Nano Letters. 9: 66-71. PMID 19105740 DOI: 10.1021/Nl802429S  0.764
2009 Bayati B, Chatelain P, Koumoutsakos P. D-leaping: Accelerating stochastic simulation algorithms for reactions with delays Journal of Computational Physics. 228: 5908-5916. DOI: 10.1016/J.Jcp.2009.05.004  0.681
2009 Gonnet P, Walther JH, Koumoutsakos P. ϑ-SHAKE: An extension to SHAKE for the explicit treatment of angular constraints Computer Physics Communications. 180: 360-364. DOI: 10.1016/J.Cpc.2008.10.020  0.612
2009 Morra G, Chatelain P, Tackley P, Koumoutsakos P. Earth curvature effects on subduction morphology: Modeling subduction in a spherical setting Acta Geotechnica. 4: 95-105. DOI: 10.1007/S11440-008-0060-5  0.686
2008 Bayati B, Chatelain P, Koumoutsakos P. Multiresolution stochastic simulations of reaction-diffusion processes. Physical Chemistry Chemical Physics : Pccp. 10: 5963-6. PMID 18825283 DOI: 10.1039/B810795E  0.7
2008 Zimmerli U, Koumoutsakos P. Simulations of electrophoretic RNA transport through transmembrane carbon nanotubes. Biophysical Journal. 94: 2546-57. PMID 18178663 DOI: 10.1529/Biophysj.106.102467  0.314
2008 Kern S, Chatelain P, Koumoutsakos P. Reverse Engineering of Self-Propelled Anguilliform Swimmers Advances in Science and Technology. 58: 203-211. DOI: 10.4028/Www.Scientific.Net/Ast.58.203  0.674
2008 Fukagata K, Kern S, Chatelain P, Koumoutsakos P, Kasagi N. Evolutionary optimization of an anisotropic compliant surface for turbulent friction drag reduction Journal of Turbulence. 9. DOI: 10.1080/14685240802441126  0.692
2008 Poncet P, Hildebrand R, Cottet GH, Koumoutsakos P. Spatially distributed control for optimal drag reduction of the flow past a circular cylinder Journal of Fluid Mechanics. 599: 111-120. DOI: 10.1017/S0022112008000177  0.368
2008 Hieber S, Koumoutsakos P. A PARTICLE METHOD FOR THE SIMULATION OF SOFT TISSUE MODELS Journal of Biomechanics. 41: S508. DOI: 10.1016/S0021-9290(08)70507-4  0.311
2008 Hieber SE, Koumoutsakos P. An immersed boundary method for smoothed particle hydrodynamics of self-propelled swimmers Journal of Computational Physics. 227: 8636-8654. DOI: 10.1016/J.Jcp.2008.06.017  0.403
2008 Hieber SE, Koumoutsakos P. A Lagrangian particle method for the simulation of linear and nonlinear elastic models of soft tissue Journal of Computational Physics. 227: 9195-9215. DOI: 10.1016/J.Jcp.2008.05.016  0.351
2008 Dupuis A, Chatelain P, Koumoutsakos P. An immersed boundary-lattice-Boltzmann method for the simulation of the flow past an impulsively started cylinder Journal of Computational Physics. 227: 4486-4498. DOI: 10.1016/J.Jcp.2008.01.009  0.717
2008 Rossinelli D, Bayati B, Koumoutsakos P. Accelerated stochastic and hybrid methods for spatial simulations of reaction–diffusion systems Chemical Physics Letters. 451: 136-140. DOI: 10.1016/J.Cplett.2007.11.055  0.355
2008 Chatelain P, Curioni A, Bergdorf M, Rossinelli D, Andreoni W, Koumoutsakos P. Billion vortex particle direct numerical simulations of aircraft wakes Computer Methods in Applied Mechanics and Engineering. 197: 1296-1304. DOI: 10.1016/J.Cma.2007.11.016  0.713
2008 Rossinelli D, Koumoutsakos P. Vortex methods for incompressible flow simulations on the GPU The Visual Computer. 24: 699-708. DOI: 10.1007/S00371-008-0250-Z  0.383
2007 Kotsalis EM, Walther JH, Koumoutsakos P. Control of density fluctuations in atomistic-continuum simulations of dense liquids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 016709. PMID 17677596 DOI: 10.1103/Physreve.76.016709  0.635
2007 Helmuth JA, Burckhardt CJ, Koumoutsakos P, Greber UF, Sbalzarini IF. A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells. Journal of Structural Biology. 159: 347-58. PMID 17532228 DOI: 10.1016/J.Jsb.2007.04.003  0.309
2007 Dupuis A, Koumoutsakos P. Effects of atomistic domain size on hybrid Lattice Boltzmann - Molecular dynamics simulations of dense fluids International Journal of Modern Physics C. 18: 644-651. DOI: 10.1142/S0129183107010899  0.399
2007 Chatelain P, Cottet G, Koumoutsakos P. Particle Mesh Hydrodynamics for Astrophysics Simulations International Journal of Modern Physics C. 18: 610-618. DOI: 10.1142/S0129183107010851  0.685
2007 Dupuis A, Kotsalis EM, Koumoutsakos P. Coupling lattice Boltzmann and molecular dynamics models for dense fluids Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 75. DOI: 10.1103/Physreve.75.046704  0.413
2007 Schoen PAE, Walther JH, Poulikakos D, Koumoutsakos P. Publisher's Note: “Phonon assisted thermophoretic motion of gold nanoparticles inside carbon nanotubes” [Appl. Phys. Lett. 90, 253116 (2007)] Applied Physics Letters. 91: 79901. DOI: 10.1063/1.2771500  0.572
2007 Schoen PAE, Walther JH, Poulikakos D, Koumoutsakos P. Phonon assisted thermophoretic motion of gold nanoparticles inside carbon nanotubes Applied Physics Letters. 90: 253116. DOI: 10.1063/1.2748367  0.592
2007 Bergdorf M, Koumoutsakos P, Leonard A. Direct numerical simulations of vortex rings at ReΓ = 7500 Journal of Fluid Mechanics. 581: 495-505. DOI: 10.1017/S0022112007006192  0.575
2007 Altenhoff AM, Walther JH, Koumoutsakos P. A stochastic boundary forcing for dissipative particle dynamics Journal of Computational Physics. 225: 1125-1136. DOI: 10.1016/J.Jcp.2007.01.015  0.668
2006 Kern S, Koumoutsakos P. Simulations of optimized anguilliform swimming. The Journal of Experimental Biology. 209: 4841-57. PMID 17142673 DOI: 10.1242/Jeb.02526  0.341
2006 Schoen PA, Walther JH, Arcidiacono S, Poulikakos D, Koumoutsakos P. Nanoparticle traffic on helical tracks: thermophoretic mass transport through carbon nanotubes. Nano Letters. 6: 1910-7. PMID 16968000 DOI: 10.1021/Nl060982R  0.614
2006 Auger A, Chatelain P, Koumoutsakos P. R-leaping: accelerating the stochastic simulation algorithm by reaction leaps. The Journal of Chemical Physics. 125: 084103. PMID 16964997 DOI: 10.1063/1.2218339  0.678
2006 Sbalzarini IF, Hayer A, Helenius A, Koumoutsakos P. Simulations of (an)isotropic diffusion on curved biological surfaces. Biophysical Journal. 90: 878-85. PMID 16284262 DOI: 10.1529/Biophysj.105.073809  0.314
2006 Bergdorf M, Koumoutsakos P. A Lagrangian Particle‐Wavelet Method Multiscale Modeling & Simulation. 5: 980-995. DOI: 10.1137/060652877  0.316
2006 Fukagata K, Kasagi N, Koumoutsakos P. Erratum: ``A theoretical prediction of friction drag reduction in turbulent flow by superhydrophobic surfaces'' [Phys. Fluids 18, 051703 (2006)] Physics of Fluids. 18: 89901. DOI: 10.1063/1.2337090  0.326
2006 Fukagata K, Kasagi N, Koumoutsakos P. A theoretical prediction of friction drag reduction in turbulent flow by superhydrophobic surfaces Physics of Fluids. 18: 51703. DOI: 10.1063/1.2205307  0.35
2006 Sbalzarini I, Walther J, Bergdorf M, Hieber S, Kotsalis E, Koumoutsakos P. PPM – A highly efficient parallel particle–mesh library for the simulation of continuum systems Journal of Computational Physics. 215: 566-588. DOI: 10.1016/J.Jcp.2005.11.017  0.624
2006 Koumoutsakos P, Müller SD. Flow Optimization Using Stochastic Algorithms Lecture Notes in Control and Information Sciences. 213-229. DOI: 10.1007/978-3-540-36085-8_10  0.318
2005 Zimmerli U, Gonnet PG, Walther JH, Koumoutsakos P. Curvature induced L-defects in water conduction in carbon nanotubes. Nano Letters. 5: 1017-22. PMID 15943435 DOI: 10.1021/Nl0503126  0.625
2005 Arcidiacono S, Walther JH, Poulikakos D, Passerone D, Koumoutsakos P. Solidification of gold nanoparticles in carbon nanotubes. Physical Review Letters. 94: 105502. PMID 15783494 DOI: 10.1103/Physrevlett.94.105502  0.615
2005 Koumoutsakos P. Multiscale Flow Simulations Using Particles Annual Review of Fluid Mechanics. 37: 457-487. DOI: 10.1146/Annurev.Fluid.37.061903.175753  0.432
2005 Bergdorf M, Cottet G, Koumoutsakos P. Multilevel Adaptive Particle Methods for Convection-Diffusion Equations Multiscale Modeling & Simulation. 4: 328-357. DOI: 10.1137/040602882  0.301
2005 Hieber SE, Koumoutsakos P. A Lagrangian particle level set method Journal of Computational Physics. 210: 342-367. DOI: 10.1016/J.Jcp.2005.04.013  0.32
2005 Werder T, Walther JH, Koumoutsakos P. Hybrid atomistic–continuum method for the simulation of dense fluid flows Journal of Computational Physics. 205: 373-390. DOI: 10.1016/J.Jcp.2004.11.019  0.678
2005 Poncet P, Cottet GH, Koumoutsakos P. Control of three-dimensional wakes using evolution strategies Comptes Rendus - Mecanique. 333: 65-77. DOI: 10.1016/J.Crme.2004.10.007  0.344
2005 Kotsalis E, Demosthenous E, Walther J, Kassinos S, Koumoutsakos P. Wetting of doped carbon nanotubes by water droplets Chemical Physics Letters. 412: 250-254. DOI: 10.1016/J.Cplett.2005.06.122  0.625
2004 Hieber SE, Walther JH, Koumoutsakos P. Remeshed smoothed particle hydrodynamics simulation of the mechanical behavior of human organs. Technology and Health Care : Official Journal of the European Society For Engineering and Medicine. 12: 305-14. PMID 15502281 DOI: 10.3233/Thc-2004-12402  0.625
2004 Walther JH, Werder T, Jaffe RL, Koumoutsakos P. Hydrodynamic properties of carbon nanotubes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 062201. PMID 15244641 DOI: 10.1103/Physreve.69.062201  0.633
2004 Jaffe RI, Gonnet P, Werder T, Walther JH, Koumoutsakos P. Water–Carbon Interactions 2: Calibration of Potentials using Contact Angle Data for Different Interaction Models Molecular Simulation. 30: 205-216. DOI: 10.1080/08927020310001659124  0.602
2004 Walther JH, Werder T, Jaffe RL, Gonnet P, Bergdorf M, Zimmerli U, Koumoutsakos P. Water–carbon interactions III: The influence of surface and fluid impurities Phys. Chem. Chem. Phys.. 6: 1988-1995. DOI: 10.1039/B312740K  0.592
2004 Kotsalis EM, Walther JH, Koumoutsakos P. Multiphase water flow inside carbon nanotubes International Journal of Multiphase Flow. 30: 995-1010. DOI: 10.1016/J.Ijmultiphaseflow.2004.03.009  0.661
2004 Müller SD, Mezić I, Walther JH, Koumoutsakos P. Transverse momentum micromixer optimization with evolution strategies Computers & Fluids. 33: 521-531. DOI: 10.1016/J.Compfluid.2003.07.004  0.572
2004 Walther J, Jaffe R, Kotsalis E, Werder T, Halicioglu T, Koumoutsakos P. Hydrophobic hydration of C60 and carbon nanotubes in water Carbon. 42: 1185-1194. DOI: 10.1016/J.Carbon.2003.12.071  0.639
2003 Werder T, Walther JH, Jaffe RL, Halicioglu T, Koumoutsakos P. On the Water−Carbon Interaction for Use in Molecular Dynamics Simulations of Graphite and Carbon Nanotubes The Journal of Physical Chemistry B. 107: 1345-1352. DOI: 10.1021/Jp0268112  0.622
2002 Chaniotis AK, Poulikakos D, Koumoutsakos P. Remeshed smoothed particle hydrodynamics for the simulation of viscous and heat conducting flows Journal of Computational Physics. 182: 67-90. DOI: 10.1006/Jcph.2002.7152  0.407
2002 Milano M, Koumoutsakos P. Neural network modeling for near wall turbulent flow Journal of Computational Physics. 182: 1-26. DOI: 10.1006/Jcph.2002.7146  0.311
2002 Milano M, Koumoutsakos P. A clustering genetic algorithm for cylinder drag optimization Journal of Computational Physics. 175: 79-107. DOI: 10.1006/Jcph.2001.6882  0.31
2001 Walther JH, Koumoutsakos P. Molecular Dynamics Simulation of Nanodroplet Evaporation Journal of Heat Transfer-Transactions of the Asme. 123: 741-748. DOI: 10.1115/1.1370517  0.628
2001 Werder T, Walther JH, Jaffe RL, Halicioglu T, Noca F, Koumoutsakos P. Molecular Dynamics Simulation of Contact Angles of Water Droplets in Carbon Nanotubes Nano Letters. 1: 697-702. DOI: 10.1021/Nl015640U  0.641
2001 Walther JH, Jaffe R, Halicioglu T, Koumoutsakos P. Carbon Nanotubes in Water:  Structural Characteristics and Energetics The Journal of Physical Chemistry B. 105: 9980-9987. DOI: 10.1021/Jp011344U  0.625
2001 Zimmermann S, Koumoutsakos P, Kinzelbach W. Simulation of pollutant transport using a particle method Journal of Computational Physics. 173: 322-347. DOI: 10.1006/Jcph.2001.6879  0.342
2001 Walther J, Koumoutsakos P. Three-Dimensional Vortex Methods for Particle-Laden Flows with Two-Way Coupling Journal of Computational Physics. 167: 39-71. DOI: 10.1006/Jcph.2000.6656  0.648
2000 Noca F, Hoenk M, Hunt B, Koumoutsakos P, Walther J, Werder T. Bio‐inspired acoustic sensors based on artificial stereocilia The Journal of the Acoustical Society of America. 108: 2494-2494. DOI: 10.1121/1.4743209  0.561
2000 Walther JH, Lee S-, Koumoutsakos P. Simulation of Particle Laden Flows Using Particle Methods Physics of Fluids. 12. DOI: 10.1063/1.4739174  0.621
2000 Cottet G, Koumoutsakos P, Salihi MLO. Vortex Methods with Spatially Varying Cores Journal of Computational Physics. 162: 164-185. DOI: 10.1006/Jcph.2000.6531  0.404
1999 Koumoutsakos P. Vorticity Flux Control For A Turbulent Channel Flow Physics of Fluids. 11: 248-250. DOI: 10.1063/1.869874  0.368
1999 Lundgren T, Koumoutsakos P. On the Generation of Vorticity at a Free Surface Journal of Fluid Mechanics. 382: 351-366. DOI: 10.1017/S0022112098003978  0.326
1997 Koumoutsakos P. Active control of vortex–wall interactions Physics of Fluids. 9: 3808-3816. DOI: 10.1063/1.869515  0.349
1997 Koumoutsakos P. Inviscid Axisymmetrization of an Elliptical Vortex Journal of Computational Physics. 138: 821-857. DOI: 10.1006/Jcph.1997.5749  0.376
1996 Koumoutsakos P, Shiels D. Simulations of the viscous flow normal to an impulsively started and uniformly accelerated flat plate Journal of Fluid Mechanics. 328: 177-227. DOI: 10.1017/S0022112096008695  0.408
1995 Koumoutsakos P, Leonard A. Flow past an Impulsively Started Cylinder Physics of Fluids. 7. DOI: 10.1063/1.4739115  0.552
1995 Koumoutsakos P, Leonard A. High-resolution simulations of the flow around an impulsively started cylinder using vortex methods Journal of Fluid Mechanics. 296: 1-38. DOI: 10.1017/S0022112095002059  0.617
1994 Koumoutsakos P, Leonard A, Pépin F. Boundary Conditions for Viscous Vortex Methods Journal of Computational Physics. 113: 52-61. DOI: 10.1006/Jcph.1994.1117  0.556
1993 Koumoutsakos P, Leonard A. Improved boundary integral method for inviscid boundary condition applications Aiaa Journal. 31: 401-404. DOI: 10.2514/3.11682  0.511
1993 Leonard A, Koumoutsakos P. High resolution vortex simulation of bluff body flows Journal of Wind Engineering and Industrial Aerodynamics. 315-325. DOI: 10.1016/0167-6105(93)90297-2  0.615
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