Justin C. Havird - Publications

University of Texas at Austin, Austin, Texas, U.S.A. 
molecular evolution, marine ecology, marine physiology, evolution, cytonuclear interactions

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Smith CH, Mejia-Trujillo R, Breton S, Pinto BJ, Kirkpatrick M, Havird JC. Mitonuclear sex determination? Empirical evidence from bivalves. Biorxiv : the Preprint Server For Biology. PMID 37461691 DOI: 10.1101/2023.07.05.547839  0.786
2023 Smith CH, Pinto BJ, Kirkpatrick M, Hillis DM, Pfeiffer JM, Havird JC. A tale of two paths: The evolution of mitochondrial recombination in bivalves with doubly uniparental inheritance. The Journal of Heredity. PMID 36897956 DOI: 10.1093/jhered/esad004  0.787
2023 Pinto BJ, Gamble T, Smith CH, Keating SE, Havird JC, Chiari Y. The revised reference genome of the leopard gecko (Eublepharis macularius) provides insight into the considerations of genome phasing and assembly. The Journal of Heredity. PMID 36869788 DOI: 10.1093/jhered/esad016  0.743
2023 Pinto BJ, Gamble T, Smith CH, Keating SE, Havird JC, Chiari Y. The revised leopard gecko ( ) reference genome provides insight into the considerations of genome phasing and assembly. Biorxiv : the Preprint Server For Biology. PMID 36712019 DOI: 10.1101/2023.01.20.523807  0.743
2022 Weaver RJ, Rabinowitz S, Thueson K, Havird JC. Genomic Signatures of Mitonuclear Coevolution in Mammals. Molecular Biology and Evolution. 39. PMID 36288802 DOI: 10.1093/molbev/msac233  0.344
2022 Sterling JJ, Sakihara TS, Brannock PM, Pearson ZG, Maclaine KD, Santos SR, Havird JC. Primary microbial succession in the anchialine ecosystem. Integrative and Comparative Biology. PMID 35687002 DOI: 10.1093/icb/icac087  0.499
2022 Breton S, Stewart DT, Brémaud J, Havird JC, Smith CH, Hoeh WR. Did doubly uniparental inheritance (DUI) of mtDNA originate as a cytoplasmic male sterility (CMS) system? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 44: e2100283. PMID 35170770 DOI: 10.1002/bies.202100283  0.767
2022 Xu R, Iannello M, Havird JC, Milani L, Ghiselli F. Lack of transcriptional coordination between mitochondrial and nuclear oxidative phosphorylation genes in the presence of two divergent mitochondrial genomes. Zoological Research. 43: 111-128. PMID 34904419 DOI: 10.24272/j.issn.2095-8137.2021.348  0.383
2021 Waneka G, Svendsen JM, Havird JC, Sloan DB. Mitochondrial mutations in Caenorhabditis elegans show signatures of oxidative damage and an AT-bias. Genetics. 219. PMID 34849888 DOI: 10.1093/genetics/iyab116  0.594
2021 Maeda GP, Iannello M, McConie HJ, Ghiselli F, Havird JC. Relaxed selection on male mitochondrial genes in DUI bivalves eases the need for mitonuclear coevolution. Journal of Evolutionary Biology. 34: 1722-1736. PMID 34533872 DOI: 10.1111/jeb.13931  0.363
2021 Zhang B, Havird JC, Wang E, Lv J, Xu X. Massive gene rearrangement in mitogenomes of phytoseiid mites. International Journal of Biological Macromolecules. PMID 34237359 DOI: 10.1016/j.ijbiomac.2021.07.011  0.323
2020 Shah AA, Woods HA, Havird JC, Encalada AC, Flecker AS, Funk WC, Guayasamin JM, Kondratieff BC, Poff NL, Thomas SA, Zamudio KR, Ghalambor CK. Temperature-dependence of metabolic rate in tropical and temperate aquatic insects: support for the Climate Variability Hypothesis in mayflies but not stoneflies. Global Change Biology. PMID 33064866 DOI: 10.1111/gcb.15400  0.479
2020 Weaver RJ, Carrion G, Nix R, Maeda GP, Rabinowitz S, Iverson ENK, Thueson K, Havird JC. High mitochondrial mutation rates in are associated with nuclear-mediated changes in mitochondrial physiology. Biology Letters. 16: 20200450. PMID 32933406 DOI: 10.1098/Rsbl.2020.0450  0.403
2020 Weaver RJ, Gonzalez BK, Santos SR, Havird JC. Red Coloration in an Anchialine Shrimp: Carotenoids, Genetic Variation, and Candidate Genes. The Biological Bulletin. 238: 119-130. PMID 32412843 DOI: 10.1086/708625  0.611
2020 Hoffman SK, Seitz KW, Havird JC, Weese DA, Santos SR. Phenotypic Comparability from Genotypic Variability among Physically Structured Microbial Consortia. Integrative and Comparative Biology. PMID 32353148 DOI: 10.1093/Icb/Icaa022  0.57
2020 Havird JC, Shah AA, Chicco AJ. Powerhouses in the cold: mitochondrial function during thermal acclimation in montane mayflies. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190181. PMID 31787050 DOI: 10.1098/Rstb.2019.0181  0.413
2019 Havird JC, Meyer E, Fujita Y, Vaught RC, Henry RP, Santos SR. Disparate responses to salinity across species and organizational levels in anchialine shrimps. The Journal of Experimental Biology. PMID 31727759 DOI: 10.1242/Jeb.211920  0.617
2019 Havird JC, Weaver RJ, Milani L, Ghiselli F, Greenway R, Ramsey AJ, Jimenez AG, Dowling DK, Hood WR, Montooth KL, Estes S, Schulte PM, Sokolova IM, Hill GE. Beyond the Powerhouse: Integrating Mitonuclear Evolution, Physiology, and Theory in Comparative Biology. Integrative and Comparative Biology. PMID 31504533 DOI: 10.1093/Icb/Icz132  0.467
2019 Forsythe ES, Sharbrough J, Havird JC, Warren JM, Sloan DB. CyMIRA: The Cytonuclear Molecular Interactions Reference for Arabidopsis. Genome Biology and Evolution. PMID 31282937 DOI: 10.1093/Gbe/Evz144  0.792
2019 Havird JC, Noe GR, Link L, Torres A, Logan DC, Sloan DB, Chicco AJ. Do angiosperms with highly divergent mitochondrial genomes have altered mitochondrial function? Mitochondrion. PMID 31229574 DOI: 10.1016/J.Mito.2019.06.005  0.706
2019 Havird JC, Forsythe ES, Williams AM, Werren JH, Dowling DK, Sloan DB. Selfish Mitonuclear Conflict. Current Biology : Cb. 29: R496-R511. PMID 31163164 DOI: 10.1016/J.Cub.2019.03.020  0.7
2019 Havird JC, McConie HJ. Sexually antagonistic mitonuclear coevolution in duplicate oxidative phosphorylation genes. Integrative and Comparative Biology. PMID 30942855 DOI: 10.1093/Icb/Icz021  0.503
2018 Hill GE, Havird JC, Sloan DB, Burton RS, Greening C, Dowling DK. Assessing the fitness consequences of mitonuclear interactions in natural populations. Biological Reviews of the Cambridge Philosophical Society. PMID 30588726 DOI: 10.1111/Brv.12493  0.694
2018 Sloan DB, Warren JM, Williams AM, Wu Z, Abdel-Ghany SE, Chicco AJ, Havird JC. Cytonuclear integration and co-evolution. Nature Reviews. Genetics. PMID 30018367 DOI: 10.1038/S41576-018-0035-9  0.688
2018 Hoffman S, Seitz K, Havird J, Weese D, Santos S. Comparing the community structure of Bacteria and micro-Eukarya from the Hawaiian anchialine ecosystem during wet and dry seasons Aquatic Microbial Ecology. 82: 87-104. DOI: 10.3354/Ame01884  0.52
2017 Sharbrough J, Havird JC, Noe GR, Warren JM, Sloan DB. The Mitonuclear Dimension of Neanderthal and Denisovan Ancestry in Modern Human Genomes. Genome Biology and Evolution. 9: 1567-1581. PMID 28854627 DOI: 10.1093/Gbe/Evx114  0.809
2017 Havird JC, Trapp P, Miller C, Bazos I, Sloan DB. Causes and consequences of rapidly evolving mtDNA in a plant lineage. Genome Biology and Evolution. PMID 28164243 DOI: 10.1093/Gbe/Evx010  0.673
2017 Hoffman SK, Seitz KW, Havird JC, Weese DA, Santos SR. Diversity and the environmental drivers of spatial variation in Bacteria and micro-Eukarya communities from the Hawaiian anchialine ecosystem Hydrobiologia. 806: 265-282. DOI: 10.1007/S10750-017-3365-2  0.561
2016 Sloan DB, Havird JC, Sharbrough J. The On-Again, Off-Again Relationship between Mitochondrial Genomes and Species Boundaries. Molecular Ecology. PMID 27997046 DOI: 10.1111/Mec.13959  0.803
2016 Rockenbach K, Havird JC, Monroe JG, Triant DA, Taylor DR, Sloan DB. Phylogenetic and Population Genetic Evidence for Positive Selection in Rapidly Evolving Plastid-Nuclear Enzyme Complexes. Genetics. PMID 27707788 DOI: 10.1534/Genetics.116.188268  0.751
2016 Havird JC, Sloan DB. The roles of mutation, selection, and expression in determining relative rates of evolution in mitochondrial vs. nuclear genomes. Molecular Biology and Evolution. PMID 27563053 DOI: 10.1093/Molbev/Msw185  0.704
2016 Havird JC, Santos SR. Developmental Transcriptomics of the Hawaiian Anchialine Shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae). Integrative and Comparative Biology. PMID 27400978 DOI: 10.1093/Icb/Icw003  0.606
2016 Havird JC, Santos SR. Here We Are, But Where Do We Go? A Systematic Review of Crustacean Transcriptomic Studies from 2014-2015. Integrative and Comparative Biology. PMID 27400974 DOI: 10.1093/Icb/Icw061  0.619
2016 Havird JC, Mitchell RT, Henry RP, Santos SR. Salinity-induced changes in gene expression from anterior and posterior gills of Callinectes sapidus (Crustacea: Portunidae) with implications for crustacean ecological genomics. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 19: 34-44. PMID 27337176 DOI: 10.1016/J.Cbd.2016.06.002  0.628
2015 Havird JC, Fitzpatrick SW, Kronenberger J, Funk WC, Angeloni LM, Sloan DB. Sex, Mitochondria, and Genetic Rescue. Trends in Ecology & Evolution. PMID 26712562 DOI: 10.1016/J.Tree.2015.11.012  0.627
2015 Havird JC, Whitehill NS, Snow CD, Sloan DB. Conservative and compensatory evolution in oxidative phosphorylation complexes of angiosperms with highly divergent rates of mitochondrial genome evolution. Evolution; International Journal of Organic Evolution. PMID 26514987 DOI: 10.1111/Evo.12808  0.69
2015 Havird JC, Vaught RC, Weese DA, Santos SR. Reproduction and Development in Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae) Clarifies Larval Ecology in the Hawaiian Anchialine Ecosystem. The Biological Bulletin. 229: 134-42. PMID 26504154 DOI: 10.1086/Bblv229N2P134  0.581
2015 Sloan DB, Fields PD, Havird JC. Mitonuclear linkage disequilibrium in human populations. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26378221 DOI: 10.1098/Rspb.2015.1704  0.695
2015 Havird JC, Hall MD, Dowling DK. The evolution of sex: A new hypothesis based on mitochondrial mutational erosion: Mitochondrial mutational erosion in ancestral eukaryotes would favor the evolution of sex, harnessing nuclear recombination to optimize compensatory nuclear coadaptation. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 37: 951-8. PMID 26201475 DOI: 10.1002/Bies.201500057  0.445
2015 Havird JC, Kocot KM, Brannock PM, Cannon JT, Waits DS, Weese DA, Santos SR, Halanych KM. Reconstruction of cyclooxygenase evolution in animals suggests variable, lineage-specific duplications, and homologs with low sequence identity. Journal of Molecular Evolution. 80: 193-208. PMID 25758350 DOI: 10.1007/S00239-015-9670-3  0.672
2014 Havird JC, Vaught RC, Weeks JR, Fujita Y, Hidaka M, Santos SR, Henry RP. Taking their breath away: metabolic responses to low-oxygen levels in anchialine shrimps (Crustacea: Atyidae and Alpheidae). Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 178: 109-20. PMID 25193179 DOI: 10.1016/J.Cbpa.2014.08.015  0.55
2014 Havird JC, Santos SR. Genomic Resources Notes accepted 1 June 2014 - 31 July 2014. Molecular Ecology Resources. 14: 1322. PMID 25118056 DOI: 10.1111/1755-0998.12315  0.612
2014 Havird JC, Santos SR, Henry RP. Osmoregulation in the Hawaiian anchialine shrimp Halocaridina rubra (Crustacea: Atyidae): expression of ion transporters, mitochondria-rich cell proliferation and hemolymph osmolality during salinity transfers. The Journal of Experimental Biology. 217: 2309-20. PMID 24744415 DOI: 10.1242/Jeb.103051  0.608
2014 Havird JC, Santos SR. Performance of single and concatenated sets of mitochondrial genes at inferring metazoan relationships relative to full mitogenome data. Plos One. 9: e84080. PMID 24454717 DOI: 10.1371/Journal.Pone.0084080  0.636
2014 Santos SR, Vaught RC, Havird JC. Genetic lineage and environmental conditions as drivers of chromatosome variation in the anchialine shrimp halocaridina rubra holthuis, 1963 (caridea: Atyidae) Journal of Crustacean Biology. 34: 647-657. DOI: 10.1163/1937240X-00002255  0.617
2013 Havird JC, Henry RP, Wilson AE. Altered expression of Na(+)/K(+)-ATPase and other osmoregulatory genes in the gills of euryhaline animals in response to salinity transfer: a meta-analysis of 59 quantitative PCR studies over 10 years. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 8: 131-40. PMID 23466469 DOI: 10.1016/J.Cbd.2013.01.003  0.349
2013 Havird JC, Weeks JR, Hau S, Santos SR. Invasive fishes in the Hawaiian anchialine ecosystem: Investigating potential predator avoidance by endemic organisms Hydrobiologia. 716: 189-201. DOI: 10.1007/S10750-013-1568-8  0.556
2012 Parker JK, Havird JC, De La Fuente L. Differentiation of Xylella fastidiosa strains via multilocus sequence analysis of environmentally mediated genes (MLSA-E). Applied and Environmental Microbiology. 78: 1385-96. PMID 22194287 DOI: 10.1128/Aem.06679-11  0.373
2010 Havird JC, Miyamoto MM. The importance of taxon sampling in genomic studies: an example from the cyclooxygenases of teleost fishes. Molecular Phylogenetics and Evolution. 56: 451-5. PMID 20382245 DOI: 10.1016/J.Ympev.2010.04.003  0.397
2008 Havird JC, Miyamoto MM, Choe KP, Evans DH. Gene duplications and losses within the cyclooxygenase family of teleosts and other chordates. Molecular Biology and Evolution. 25: 2349-59. PMID 18718920 DOI: 10.1093/Molbev/Msn183  0.748
2008 Claiborne JB, Choe KP, Morrison-Shetlar AI, Weakley JC, Havird J, Freiji A, Evans DH, Edwards SL. Molecular detection and immunological localization of gill Na+/H+ exchanger in the dogfish (Squalus acanthias). American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 294: R1092-102. PMID 18094061 DOI: 10.1152/Ajpregu.00718.2007  0.733
2006 Hyndman KA, Choe KP, Havird JC, Rose RE, Piermarini PM, Evans DH. Neuronal nitric oxide synthase in the gill of the killifish, Fundulus heteroclitus Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology. 144: 510-519. PMID 16814584 DOI: 10.1016/J.Cbpb.2006.05.002  0.735
2006 Choe KP, Havird J, Rose R, Hyndman K, Piermarini P, Evans DH. COX2 in a euryhaline teleost, Fundulus heteroclitus: Primary sequence, distribution, localization, and potential function in gills during salinity acclimation Journal of Experimental Biology. 209: 1696-1708. PMID 16621950 DOI: 10.1242/Jeb.02198  0.746
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