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Rachael A. Bay - Publications

Affiliations: 
Evolution & Ecology University of California, Davis, Davis, CA 
Website:
https://baylab.github.io/
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Tsai WLE, Escalona M, Garrett KL, Terrill RS, Sahasrabudhe R, Nguyen O, Beraut E, Seligmann W, Fairbairn CW, Harrigan RJ, McCormack JE, Alfaro ME, Smith TB, Bay RA. A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia). The Journal of Heredity. PMID 38401156 DOI: 10.1093/jhered/esae008  0.336
2023 Barr K, Bossu CM, Bay RA, Anderson EC, Belthoff J, Trulio LA, Chromczak D, Wisinski CL, Smith TB, Ruegg KC. Genetic and environmental drivers of migratory behavior in western burrowing owls and implications for conservation and management. Evolutionary Applications. 16: 1889-1900. PMID 38143900 DOI: 10.1111/eva.13600  0.407
2023 Adams NE, Bandivadekar RR, Battey CJ, Clark MW, Epperly K, Ruegg K, Tell LA, Bay RA. Widespread gene flow following range expansion in Anna's hummingbird. Molecular Ecology. PMID 36934423 DOI: 10.1111/mec.16928  0.404
2023 Schiebelhut LM, Grosberg RK, Stachowicz JJ, Bay RA. Genomic responses to parallel temperature gradients in the eelgrass Zostera marina in adjacent bays. Molecular Ecology. PMID 36814144 DOI: 10.1111/mec.16899  0.372
2022 Alvarado AH, Bossu CM, Harrigan RJ, Bay RA, Nelson ARP, Smith TB, Ruegg KC. Genotype-environment associations across spatial scales reveal the importance of putative adaptive genetic variation in divergence. Evolutionary Applications. 15: 1390-1407. PMID 36187181 DOI: 10.1111/eva.13444  0.496
2021 Rose NH, Bay RA, Morikawa MK, Thomas L, Sheets EA, Palumbi SR. Genomic analysis of distinct bleaching tolerances among cryptic coral species. Proceedings. Biological Sciences. 288: 20210678. PMID 34641729 DOI: 10.1098/rspb.2021.0678  0.728
2021 Somveille M, Bay RA, Smith TB, Marra PP, Ruegg KC. A general theory of avian migratory connectivity. Ecology Letters. PMID 34173311 DOI: 10.1111/ele.13817  0.412
2021 Ruegg K, Anderson EC, Somveille M, Bay RA, Whitfield M, Paxton EH, Smith TB. Linking climate niches across seasons to assess population vulnerability in a migratory bird. Global Change Biology. PMID 33844878 DOI: 10.1111/gcb.15639  0.503
2021 Barr K, Beichman AC, Kalhori P, Rajbhandary J, Bay RA, Ruegg K, Smith TB. Persistent panmixia despite extreme habitat loss and population decline in the threatened tricolored blackbird (). Evolutionary Applications. 14: 674-684. PMID 33767743 DOI: 10.1111/eva.13147  0.479
2021 Bay RA, Karp DS, Saracco JF, Anderegg WRL, Frishkoff LO, Wiedenfeld D, Smith TB, Ruegg K. Genetic variation reveals individual-level climate tracking across the annual cycle of a migratory bird. Ecology Letters. PMID 33594778 DOI: 10.1111/ele.13706  0.428
2021 Ruegg KC, Brinkmeyer M, Bossu CM, Bay RA, Anderson EC, Boal CW, Dawson RD, Eschenbauch A, McClure CJW, Miller KE, Morrow L, Morrow J, Oleyar MD, Ralph B, Schulwitz S, et al. The American Kestrel (Falco sparverius) genoscape: implications for monitoring, management, and subspecies boundaries Ornithology. 138. DOI: 10.1093/AUK/UKAA051  0.326
2020 Bay RA, Guerrero L. Can genomes predict coral bleaching? Science (New York, N.Y.). 369: 249-250. PMID 32675359 DOI: 10.1126/Science.Abc9342  0.386
2020 Capblancq T, Fitzpatrick MC, Bay RA, Exposito-Alonso M, Keller SR. Genomic Prediction of (Mal)Adaptation Across Current and Future Climatic Landscapes Annual Review of Ecology, Evolution, and Systematics. 51. DOI: 10.1146/Annurev-Ecolsys-020720-042553  0.548
2019 Chavarria-Pizarro T, Gomez JP, Ungvari-Martin J, Bay R, Miyamoto MM, Kimball R. Strong phenotypic divergence in spite of low genetic structure in the endemic Mangrove Warbler subspecies () of Costa Rica. Ecology and Evolution. 9: 13902-13918. PMID 31938490 DOI: 10.1002/Ece3.5826  0.472
2019 Bay RA, Taylor EB, Schluter D. Parallel introgression and selection on introduced alleles in a native species. Molecular Ecology. PMID 30980778 DOI: 10.1111/Mec.15097  0.571
2018 Cunning R, Bay RA, Gillette P, Baker AC, Traylor-Knowles N. Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution. Scientific Reports. 8: 16134. PMID 30382153 DOI: 10.1038/S41598-018-34459-8  0.463
2018 Bay RA, Harrigan RJ, Buermann W, Underwood VL, Gibbs HL, Smith TB, Ruegg K. Response to Comment on "Genomic signals of selection predict climate-driven population declines in a migratory bird". Science (New York, N.Y.). 361. PMID 30072513 DOI: 10.1126/Science.Aat7956  0.525
2018 Ruegg K, Bay RA, Anderson EC, Saracco JF, Harrigan RJ, Whitfield M, Paxton EH, Smith TB. Ecological genomics predicts climate vulnerability in an endangered southwestern songbird. Ecology Letters. PMID 29745027 DOI: 10.1111/Ele.12977  0.554
2018 Bay RA, Harrigan RJ, Underwood VL, Gibbs HL, Smith TB, Ruegg K. Genomic signals of selection predict climate-driven population declines in a migratory bird. Science (New York, N.Y.). 359: 83-86. PMID 29302012 DOI: 10.1126/Science.Aan4380  0.597
2018 Bay RA, Ruegg K. Genomic islands of divergence or opportunities for introgression? Proceedings. Biological Sciences. 284. PMID 28275143 DOI: 10.1098/Rspb.2016.2414  0.529
2018 Thomas L, Rose NH, Bay RA, López EH, Morikawa MK, Ruiz-Jones L, Palumbi SR. Mechanisms of Thermal Tolerance in Reef-Building Corals across a Fine-Grained Environmental Mosaic: Lessons from Ofu, American Samoa Frontiers in Marine Science. 4. DOI: 10.3389/Fmars.2017.00434  0.753
2017 Bay RA, Rose NH, Logan CA, Palumbi SR. Genomic models predict successful coral adaptation if future ocean warming rates are reduced. Science Advances. 3: e1701413. PMID 29109975 DOI: 10.1126/Sciadv.1701413  0.752
2017 Rose NH, Bay RA, Morikawa MK, Palumbi SR. Polygenic evolution drives species divergence and climate adaptation in corals. Evolution; International Journal of Organic Evolution. PMID 29098686 DOI: 10.1111/Evo.13385  0.734
2017 Bay RA, Arnegard ME, Conte GL, Best J, Bedford NL, McCann SR, Dubin ME, Chan YF, Jones FC, Kingsley DM, Schluter D, Peichel CL. Genetic Coupling of Female Mate Choice with Polygenic Ecological Divergence Facilitates Stickleback Speciation. Current Biology : Cb. PMID 29056455 DOI: 10.1016/J.Cub.2017.09.037  0.398
2017 Bay RA, Palumbi SR. Transcriptome predictors of coral survival and growth in a highly variable environment. Ecology and Evolution. 7: 4794-4803. PMID 28690808 DOI: 10.1002/Ece3.2685  0.59
2017 Bay RA, Rose N, Barrett R, Bernatchez L, Ghalambor CK, Lasky JR, Brem RB, Palumbi SR, Ralph P. Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures. The American Naturalist. 189: 463-473. PMID 28410032 DOI: 10.1086/691233  0.745
2017 Contina A, Bay RA, Le Underwood V, Smith TB, Kelly JF, Bridge ES, Ruegg KC. Characterization of SNP markers for the painted bunting (Passerina ciris) and their relevance in population differentiation and genome evolution studies Conservation Genetics Resources. 11: 5-10. DOI: 10.1007/S12686-017-0950-7  0.391
2015 Bay RA, Palumbi SR. Rapid Acclimation Ability Mediated by Transcriptome Changes in Reef-Building Corals. Genome Biology and Evolution. 7: 1602-12. PMID 25979751 DOI: 10.1093/Gbe/Evv085  0.601
2014 Bay RA, Palumbi SR. Multilocus adaptation associated with heat resistance in reef-building corals. Current Biology : Cb. 24: 2952-6. PMID 25454780 DOI: 10.1016/J.Cub.2014.10.044  0.679
2014 Palumbi SR, Barshis DJ, Traylor-Knowles N, Bay RA. Mechanisms of reef coral resistance to future climate change. Science (New York, N.Y.). 344: 895-8. PMID 24762535 DOI: 10.1126/Science.1251336  0.652
2014 Bay RA, Ramakrishnan U, Hadly EA. A call for tiger management using "reserves" of genetic diversity. The Journal of Heredity. 105: 295-302. PMID 24336928 DOI: 10.1093/Jhered/Est086  0.482
2013 Bay RA, Bielawski JP. Inference of functional divergence among proteins when the evolutionary process is non-stationary. Journal of Molecular Evolution. 76: 205-15. PMID 23443835 DOI: 10.1007/S00239-013-9549-0  0.369
2011 Bay RA, Bielawski JP. Recombination detection under evolutionary scenarios relevant to functional divergence. Journal of Molecular Evolution. 73: 273-86. PMID 22210457 DOI: 10.1007/S00239-011-9473-0  0.349
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