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Tomáš Pluskal - Publications

Affiliations: 
2005-2015 Hiroshima University, Higashihiroshima-shi, Hiroshima-ken, Japan 
 2015-2020 Whitehead Institute for Biomedical Research, Cambridge, MA, United States 
 2020- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Fallon TR, Čalounová T, Mokrejš M, Weng JK, Pluskal T. transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. Bmc Bioinformatics. 24: 133. PMID 37016291 DOI: 10.1186/s12859-023-05254-8  0.727
2023 Schmid R, Heuckeroth S, Korf A, Smirnov A, Myers O, Dyrlund TS, Bushuiev R, Murray KJ, Hoffmann N, Lu M, Sarvepalli A, Zhang Z, Fleischauer M, Dührkop K, Wesner M, ... ... Pluskal T, et al. Integrative analysis of multimodal mass spectrometry data in MZmine 3. Nature Biotechnology. PMID 36859716 DOI: 10.1038/s41587-023-01690-2  0.724
2020 Kim CY, Mitchell AJ, Glinkerman CM, Li FS, Pluskal T, Weng JK. The chloroalkaloid (-)-acutumine is biosynthesized via a Fe(II)- and 2-oxoglutarate-dependent halogenase in Menispermaceae plants. Nature Communications. 11: 1867. PMID 32313070 DOI: 10.1038/S41467-020-15777-W  0.692
2019 Torrens-Spence MP, Bobokalonova A, Carballo V, Glinkerman CM, Pluskal T, Shen A, Weng JK. PBS3 and EPS1 complete salicylic acid biosynthesis from isochorismate in Arabidopsis. Molecular Plant. PMID 31760159 DOI: 10.1016/J.Molp.2019.11.005  0.757
2019 Levsh O, Pluskal T, Carballo V, Mitchell AJ, Weng JK. Independent evolution of rosmarinic acid biosynthesis in two sister families under the Lamiids clade of flowering plants. The Journal of Biological Chemistry. PMID 31481469 DOI: 10.1074/Jbc.Ra119.010454  0.754
2019 Pluskal T, Torrens-Spence MP, Fallon TR, De Abreu A, Shi CH, Weng JK. The biosynthetic origin of psychoactive kavalactones in kava. Nature Plants. PMID 31332312 DOI: 10.1038/S41477-019-0474-0  0.73
2019 Zhao Q, Yang J, Cui MY, Liu J, Fang Y, Yan M, Qiu W, Shang H, Xu Z, Yidiresi R, Weng JK, Pluskal T, Vigouroux M, Steuernagel B, Wei Y, et al. The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis. Molecular Plant. PMID 30999079 DOI: 10.1016/J.Molp.2019.04.002  0.582
2018 Torrens-Spence MP, Liu CT, Pluskal T, Chung YK, Weng JK. Monoamine biosynthesis via a noncanonical calcium-activatable aromatic amino acid decarboxylase in psilocybin mushroom. Acs Chemical Biology. PMID 30484626 DOI: 10.1021/Acschembio.8B00821  0.769
2018 Christ B, Pluskal T, Aubry S, Weng JK. Contribution of Untargeted Metabolomics for Future Assessment of Biotech Crops. Trends in Plant Science. PMID 30361071 DOI: 10.1016/J.Tplants.2018.09.011  0.758
2018 Sajiki K, Tahara Y, Uehara L, Sasaki T, Pluskal T, Yanagida M. Genetic regulation of mitotic competence in G quiescent cells. Science Advances. 4: eaat5685. PMID 30116786 DOI: 10.1126/Sciadv.Aat5685  0.469
2018 Sajiki K, Tahara Y, Villar-Briones A, Pluskal T, Teruya T, Mori A, Hatanaka M, Ebe M, Nakamura T, Aoki K, Nakaseko Y, Yanagida M. Genetic defects in SAPK signalling, chromatin regulation, vesicle transport and CoA-related lipid metabolism are rescued by rapamycin in fission yeast. Open Biology. 8. PMID 29593117 DOI: 10.1098/Rsob.170261  0.515
2017 Torrens-Spence MP, Pluskal T, Li FS, Carballo V, Weng JK. Complete Pathway Elucidation and Heterologous Reconstitution of Rhodiola Salidroside Biosynthesis. Molecular Plant. PMID 29277428 DOI: 10.1016/J.Molp.2017.12.007  0.771
2017 Kersten RD, Lee S, Fujita D, Pluskal T, Kram S, Smith JE, Iwai T, Noel JP, Fujita M, Weng JK. A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-scale NMR-coupled Crystalline Sponge XRD Analysis. Journal of the American Chemical Society. PMID 29083151 DOI: 10.1021/Jacs.7B09452  0.784
2017 Pluskal T, Weng JK. Natural product modulators of human sensations and mood: molecular mechanisms and therapeutic potential. Chemical Society Reviews. PMID 28933478 DOI: 10.1039/C7Cs00411G  0.523
2016 Pluskal T, Yanagida M. Metabolomic Analysis of Schizosaccharomyces pombe: Sample Preparation, Detection, and Data Interpretation. Cold Spring Harbor Protocols. 2016: pdb.top079921. PMID 27934694 DOI: 10.1101/Pdb.Top079921  0.493
2016 Pluskal T, Yanagida M. Measurement of Metabolome Samples Using Liquid Chromatography-Mass Spectrometry, Data Acquisition, and Processing. Cold Spring Harbor Protocols. 2016: pdb.prot091561. PMID 27934688 DOI: 10.1101/Pdb.Prot091561  0.474
2016 Pluskal T, Nakamura T, Yanagida M. Preparation of Intracellular Metabolite Extracts from Liquid Schizosaccharomyces pombe Cultures. Cold Spring Harbor Protocols. 2016: pdb.prot091553. PMID 27934687 DOI: 10.1101/Pdb.Prot091553  0.485
2016 Shah M, Su D, Scheliga JS, Pluskal T, Boronat S, Motamedchaboki K, Campos AR, Qi F, Hidalgo E, Yanagida M, Wolf DA. A Transcript-Specific eIF3 Complex Mediates Global Translational Control of Energy Metabolism. Cell Reports. PMID 27477275 DOI: 10.1016/J.Celrep.2016.07.006  0.495
2016 Pluskal T, Sajiki K, Becker J, Takeda K, Yanagida M. Diverse fission yeast genes required for responding to oxidative and metal stress: Comparative analysis of glutathione-related and other defense gene deletions. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 27005325 DOI: 10.1111/Gtc.12359  0.477
2014 Murakami I, Chaleckis R, Pluskal T, Ito K, Hori K, Ebe M, Yanagida M, Kondoh H. Metabolism of skin-absorbed resveratrol into its glucuronized form in mouse skin. Plos One. 9: e115359. PMID 25506824 DOI: 10.1371/Journal.Pone.0115359  0.486
2014 Chaleckis R, Ebe M, Pluskal T, Murakami I, Kondoh H, Yanagida M. Unexpected similarities between the Schizosaccharomyces and human blood metabolomes, and novel human metabolites. Molecular Biosystems. 10: 2538-51. PMID 25010571 DOI: 10.1039/C4Mb00346B  0.518
2014 Pluskal T, Ueno M, Yanagida M. Genetic and metabolomic dissection of the ergothioneine and selenoneine biosynthetic pathway in the fission yeast, S. pombe, and construction of an overproduction system. Plos One. 9: e97774. PMID 24828577 DOI: 10.1371/Journal.Pone.0097774  0.54
2013 Sajiki K, Pluskal T, Shimanuki M, Yanagida M. Metabolomic analysis of fission yeast at the onset of nitrogen starvation. Metabolites. 3: 1118-29. PMID 24958269 DOI: 10.3390/Metabo3041118  0.522
2013 Shimanuki M, Uehara L, Pluskal T, Yoshida T, Kokubu A, Kawasaki Y, Yanagida M. Klf1, a C2H2 zinc finger-transcription factor, is required for cell wall maintenance during long-term quiescence in differentiated G0 phase. Plos One. 8: e78545. PMID 24167631 DOI: 10.1371/Journal.Pone.0078545  0.482
2013 Chaleckis R, Pluskal T, Hayashi T, Kondoh H, Yanagida M. [Metabolomic analysis of human blood, plasma and red blood cells in comparison with eukaryotic microbe]. [Rinshō Ketsueki] the Japanese Journal of Clinical Hematology. 54: 1603-14. PMID 24064809 DOI: DN/JST.JSTAGE/rinketsu/54.1603  0.36
2012 Nakamura T, Pluskal T, Nakaseko Y, Yanagida M. Impaired coenzyme A synthesis in fission yeast causes defective mitosis, quiescence-exit failure, histone hypoacetylation and fragile DNA. Open Biology. 2: 120117. PMID 23091701 DOI: 10.1098/Rsob.120117  0.497
2012 Pluskal T, Uehara T, Yanagida M. Highly accurate chemical formula prediction tool utilizing high-resolution mass spectra, MS/MS fragmentation, heuristic rules, and isotope pattern matching. Analytical Chemistry. 84: 4396-403. PMID 22497521 DOI: 10.1021/Ac3000418  0.476
2011 Pluskal T, Hayashi T, Saitoh S, Fujisawa A, Yanagida M. Specific biomarkers for stochastic division patterns and starvation-induced quiescence under limited glucose levels in fission yeast. The Febs Journal. 278: 1299-315. PMID 21306563 DOI: 10.1111/J.1742-4658.2011.08050.X  0.609
2010 Pluskal T, Castillo S, Villar-Briones A, Oresic M. MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. Bmc Bioinformatics. 11: 395. PMID 20650010 DOI: 10.1186/1471-2105-11-395  0.313
2010 Takeda K, Yoshida T, Kikuchi S, Nagao K, Kokubu A, Pluskal T, Villar-Briones A, Nakamura T, Yanagida M. Synergistic roles of the proteasome and autophagy for mitochondrial maintenance and chronological lifespan in fission yeast. Proceedings of the National Academy of Sciences of the United States of America. 107: 3540-5. PMID 20133687 DOI: 10.1073/Pnas.0911055107  0.467
2010 Pluskal T, Nakamura T, Villar-Briones A, Yanagida M. Metabolic profiling of the fission yeast S. pombe: quantification of compounds under different temperatures and genetic perturbation. Molecular Biosystems. 6: 182-98. PMID 20024080 DOI: 10.1039/B908784B  0.537
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