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Niclas Karlsson - Publications

Affiliations: 
2006 Proteome Systems 
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bechtella L, Chunsheng J, Fentker K, Ertürk GR, Safferthal M, Polewski Ł, Götze M, Graeber SY, Vos GM, Struwe WB, Mall MA, Mertins P, Karlsson NG, Pagel K. Ion mobility-tandem mass spectrometry of mucin-type O-glycans. Nature Communications. 15: 2611. PMID 38521783 DOI: 10.1038/s41467-024-46825-4  0.329
2022 Mariethoz J, Alocci D, Karlsson NG, Packer NH, Lisacek F. An Interactive View of Glycosylation. Methods in Molecular Biology (Clifton, N.J.). 2370: 41-65. PMID 34611864 DOI: 10.1007/978-1-0716-1685-7_3  0.477
2021 Aoki-Kinoshita KF, Lisacek F, Karlsson N, Kolarich D, Packer NH. GlycoBioinformatics. Beilstein Journal of Organic Chemistry. 17: 2726-2728. PMID 34858527 DOI: 10.3762/bjoc.17.184  0.444
2020 Zhang T, Madunić K, Holst S, Zhang J, Jin C, Ten Dijke P, Karlsson NG, Stavenhagen K, Wuhrer M. Development of a 96-well plate sample preparation method for integrated N- and O-glycomics using porous graphitized carbon liquid chromatography-mass spectrometry. Molecular Omics. PMID 32281997 DOI: 10.1039/c9mo00180h  0.309
2019 De Leoz MLA, Duewer DL, Fung A, Liu L, Yau HK, Potter O, Staples GO, Furuki K, Frenkel R, Hu Y, Sosic Z, Zhang P, Altmann F, Gruber C, Shao C, ... ... Karlsson NG, et al. NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods. Molecular & Cellular Proteomics : McP. PMID 31591262 DOI: 10.1074/Mcp.Ra119.001677  0.509
2019 Chatterjee S, Lee LY, Kawahara R, Abrahams JL, Adamczyk B, Anugraham M, Ashwood C, Sumer-Bayraktar Z, Briggs MT, Chik JHL, Everest-Dass A, Förster S, Hinneburg H, Leite KRM, Loke I, ... ... Karlsson NG, et al. Protein Paucimannosylation is an Enriched N-glycosylation Signature of Human Cancers. Proteomics. e1900010. PMID 31419058 DOI: 10.1002/Pmic.201900010  0.464
2019 Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, ... ... Karlsson NG, et al. Towards a standardized bioinformatics infrastructure for N- and O-glycomics. Nature Communications. 10: 3275. PMID 31332201 DOI: 10.1038/S41467-019-11131-X  0.592
2019 Jin C, Harvey DJ, Struwe WB, Karlsson NG. Separation of Isomeric O-glycans by ion mobility and liquid chromatography-mass spectrometry. Analytical Chemistry. PMID 31298840 DOI: 10.1021/acs.analchem.9b01772  0.362
2019 Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F. GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical. Journal of Proteome Research. 18: 664-677. PMID 30574787 DOI: 10.1021/Acs.Jproteome.8B00766  0.497
2018 Mariethoz J, Alocci D, Gastaldello A, Horlacher O, Gasteiger E, Rojas-Macias M, Karlsson NG, Packer NH, Lisacek F. Glycomics@ExPASy: Bridging the Gap. Molecular & Cellular Proteomics : McP. 17: 2164-2176. PMID 30097532 DOI: 10.1074/Mcp.Ra118.000799  0.48
2018 Issa SMA, Vitiazeva V, Hayes CA, Karlsson NG. Higher-energy collisional dissociation (HCD) Mass Spectrometry (MS) of sulfated O-linked oligosaccharides. Journal of Proteome Research. PMID 30070847 DOI: 10.1021/acs.jproteome.8b00376  0.314
2017 Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, et al. GlyTouCan: an accessible glycan structure repository. Glycobiology. 27: 915-919. PMID 28922742 DOI: 10.1093/Glycob/Cwx066  0.498
2017 Horlacher O, Jin C, Alocci D, Mariethoz J, Müller M, Karlsson NG, Lisacek F. Glycoforest 1.0. Analytical Chemistry. PMID 28901741 DOI: 10.1021/acs.analchem.7b02754  0.314
2017 Miller RL, Guimond SE, Prescott M, Turnbull JE, Karlsson NG. Versatile Separation and Analysis of Heparan Sulfate Oligosaccharides using Graphitised Carbon Liquid Chromatography and Electrospray Mass Spectrometry. Analytical Chemistry. PMID 28756657 DOI: 10.1021/Acs.Analchem.7B01417  0.437
2017 Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG. Databases and Associated Tools for Glycomics and Glycoproteomics. Methods in Molecular Biology (Clifton, N.J.). 1503: 235-264. PMID 27743371 DOI: 10.1007/978-1-4939-6493-2_18  0.535
2016 Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, et al. The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. Glycobiology. PMID 27993942 DOI: 10.1093/Glycob/Cww118  0.51
2016 Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, et al. The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology. PMID 27654115 DOI: 10.1093/Glycob/Cww082  0.532
2015 Mariethoz J, Khatib K, Alocci D, Campbell MP, Karlsson NG, Packer NH, Mullen EH, Lisacek F. SugarBindDB, a resource of glycan-mediated host-pathogen interactions. Nucleic Acids Research. PMID 26578555 DOI: 10.1093/Nar/Gkv1247  0.487
2015 Ito H, Kaji H, Togayachi A, Azadi P, Ishihara M, Geyer R, Galuska C, Geyer H, Kakehi K, Kinoshita M, Karlsson NG, Jin C, Kato K, Yagi H, Kondo S, et al. Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycoconjugate Journal. PMID 26511985 DOI: 10.1007/S10719-015-9625-3  0.543
2014 Gotz L, Abrahams JL, Mariethoz J, Rudd PM, Karlsson NG, Packer NH, Campbell MP, Lisacek F. GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination. Bioinformatics (Oxford, England). 30: 3131-3. PMID 25015990 DOI: 10.1093/Bioinformatics/Btu425  0.507
2014 York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, et al. MIRAGE: the minimum information required for a glycomics experiment. Glycobiology. 24: 402-6. PMID 24653214 DOI: 10.1093/Glycob/Cwu018  0.6
2014 Campbell MP, Ranzinger R, Lütteke T, Mariethoz J, Hayes CA, Zhang J, Akune Y, Aoki-Kinoshita KF, Damerell D, Carta G, York WS, Haslam SM, Narimatsu H, Rudd PM, Karlsson NG, et al. Toolboxes for a standardised and systematic study of glycans. Bmc Bioinformatics. 15: S9. PMID 24564482 DOI: 10.1186/1471-2105-15-S1-S9  0.502
2014 Gaunitz S, Liu J, Nilsson A, Karlsson N, Holgersson J. Avian influenza H5 hemagglutinin binds with high avidity to sialic acid on different O-linked core structures on mucin-type fusion proteins. Glycoconjugate Journal. 31: 145-59. PMID 24233973 DOI: 10.1007/S10719-013-9503-9  0.33
2014 Campbell MP, Nguyen-Khuong T, Hayes CA, Flowers SA, Alagesan K, Kolarich D, Packer NH, Karlsson NG. Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository. Biochimica Et Biophysica Acta. 1844: 108-16. PMID 23624262 DOI: 10.1016/J.Bbapap.2013.04.018  0.587
2013 Kenny DT, Gaunitz S, Hayes CA, Gustafsson A, Sjöblom M, Holgersson J, Karlsson NG. Mass spectrometric analysis of O-linked oligosaccharides from various recombinant expression systems. Methods in Molecular Biology (Clifton, N.J.). 988: 145-67. PMID 23475718 DOI: 10.1007/978-1-62703-327-5_9  0.348
2012 Ali L, Kenny DT, Hayes CA, Karlsson NG. Structural Identification of O-Linked Oligosaccharides Using Exoglycosidases and MSn Together with UniCarb-DB Fragment Spectra Comparison. Metabolites. 2: 648-66. PMID 24957756 DOI: 10.3390/metabo2040648  0.321
2012 Jensen PH, Karlsson NG, Kolarich D, Packer NH. Structural analysis of N- and O-glycans released from glycoproteins. Nature Protocols. 7: 1299-310. PMID 22678433 DOI: 10.1038/Nprot.2012.063  0.6
2012 Karlsson NG, McGuckin MA. O-Linked glycome and proteome of high-molecular-mass proteins in human ovarian cancer ascites: Identification of sulfation, disialic acid and O-linked fucose. Glycobiology. 22: 918-29. PMID 22422444 DOI: 10.1093/glycob/cws060  0.31
2011 Issa SM, Schulz BL, Packer NH, Karlsson NG. Analysis of mucosal mucins separated by SDS-urea agarose polyacrylamide composite gel electrophoresis. Electrophoresis. 32: 3554-63. PMID 22120911 DOI: 10.1002/Elps.201100374  0.555
2011 Campbell MP, Hayes CA, Struwe WB, Wilkins MR, Aoki-Kinoshita KF, Harvey DJ, Rudd PM, Kolarich D, Lisacek F, Karlsson NG, Packer NH. UniCarbKB: putting the pieces together for glycomics research. Proteomics. 11: 4117-21. PMID 21898825 DOI: 10.1002/Pmic.201100302  0.491
2011 Hayes CA, Karlsson NG, Struwe WB, Lisacek F, Rudd PM, Packer NH, Campbell MP. UniCarb-DB: a database resource for glycomic discovery. Bioinformatics (Oxford, England). 27: 1343-4. PMID 21398669 DOI: 10.1093/Bioinformatics/Btr137  0.574
2011 Kenny D, Hayes CA, Jin C, Karlsson NG. Perspective and Review of Mass Spectrometric based sulfoglycomics of N-linked and O-linked oligosaccharides Current Proteomics. 8: 278-296. DOI: 10.2174/157016411798220853  0.335
2010 Estrella RP, Whitelock JM, Packer NH, Karlsson NG. The glycosylation of human synovial lubricin: implications for its role in inflammation. The Biochemical Journal. 429: 359-67. PMID 20443780 DOI: 10.1042/Bj20100360  0.498
2010 Wada Y, Dell A, Haslam SM, Tissot B, Canis K, Azadi P, Bäckström M, Costello CE, Hansson GC, Hiki Y, Ishihara M, Ito H, Kakehi K, Karlsson N, Hayes CE, et al. Comparison of methods for profiling O-glycosylation: Human Proteome Organisation Human Disease Glycomics/Proteome Initiative multi-institutional study of IgA1. Molecular & Cellular Proteomics : McP. 9: 719-27. PMID 20038609 DOI: 10.1074/Mcp.M900450-Mcp200  0.62
2009 Estrella RP, Whitelock JM, Roubin RH, Packer NH, Karlsson NG. Small-scale enzymatic digestion of glycoproteins and proteoglycans for analysis of oligosaccharides by LC-MS and FACE gel electrophoresis. Methods in Molecular Biology (Clifton, N.J.). 534: 171-92. PMID 19277552 DOI: 10.1007/978-1-59745-022-5_13  0.563
2009 Karlsson NG, Thomsson KA. Salivary MUC7 is a major carrier of blood group I type O-linked oligosaccharides serving as the scaffold for sialyl Lewis x. Glycobiology. 19: 288-300. PMID 19043084 DOI: 10.1093/glycob/cwn136  0.309
2008 Wilson NL, Robinson LJ, Donnet A, Bovetto L, Packer NH, Karlsson NG. Glycoproteomics of milk: differences in sugar epitopes on human and bovine milk fat globule membranes. Journal of Proteome Research. 7: 3687-96. PMID 18624397 DOI: 10.1021/Pr700793K  0.552
2007 Estrella RP, Whitelock JM, Packer NH, Karlsson NG. Graphitized carbon LC-MS characterization of the chondroitin sulfate oligosaccharides of aggrecan. Analytical Chemistry. 79: 3597-606. PMID 17411012 DOI: 10.1021/Ac0622227  0.533
2007 Schulz BL, Sloane AJ, Robinson LJ, Prasad SS, Lindner RA, Robinson M, Bye PT, Nielson DW, Harry JL, Packer NH, Karlsson NG. Glycosylation of sputum mucins is altered in cystic fibrosis patients. Glycobiology. 17: 698-712. PMID 17392389 DOI: 10.1093/Glycob/Cwm036  0.431
2007 Wada Y, Azadi P, Costello CE, Dell A, Dwek RA, Geyer H, Geyer R, Kakehi K, Karlsson NG, Kato K, Kawasaki N, Khoo KH, Kim S, Kondo A, Lattova E, et al. Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycobiology. 17: 411-22. PMID 17223647 DOI: 10.1093/Glycob/Cwl086  0.578
2006 Packer NH, Karlsson NG. There are no facts, only interpretations. Journal of Proteome Research. 5: 1291-2. PMID 16791989 DOI: 10.1021/Pr0627286  0.425
2005 Karlsson NG, Schulz BL, Packer NH, Whitelock JM. Use of graphitised carbon negative ion LC-MS to analyse enzymatically digested glycosaminoglycans. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 824: 139-47. PMID 16054881 DOI: 10.1016/J.Jchromb.2005.07.014  0.514
2005 Thomsson KA, Schulz BL, Packer NH, Karlsson NG. MUC5B glycosylation in human saliva reflects blood group and secretor status. Glycobiology. 15: 791-804. PMID 15814823 DOI: 10.1093/Glycob/Cwi059  0.49
2005 Schulz BL, Sloane AJ, Robinson LJ, Sebastian LT, Glanville AR, Song Y, Verkman AS, Harry JL, Packer NH, Karlsson NG. Mucin glycosylation changes in cystic fibrosis lung disease are not manifest in submucosal gland secretions. The Biochemical Journal. 387: 911-9. PMID 15563276 DOI: 10.1042/Bj20041641  0.429
2004 Karlsson NG, Wilson NL, Wirth HJ, Dawes P, Joshi H, Packer NH. Negative ion graphitised carbon nano-liquid chromatography/mass spectrometry increases sensitivity for glycoprotein oligosaccharide analysis. Rapid Communications in Mass Spectrometry : Rcm. 18: 2282-92. PMID 15384149 DOI: 10.1002/Rcm.1626  0.572
2004 Joshi HJ, Harrison MJ, Schulz BL, Cooper CA, Packer NH, Karlsson NG. Development of a mass fingerprinting tool for automated interpretation of oligosaccharide fragmentation data. Proteomics. 4: 1650-64. PMID 15174134 DOI: 10.1002/Pmic.200300784  0.542
2004 Karlsson NG, Schulz BL, Packer NH. Structural determination of neutral O-linked oligosaccharide alditols by negative ion LC-electrospray-MSn. Journal of the American Society For Mass Spectrometry. 15: 659-72. PMID 15121195 DOI: 10.1016/J.Jasms.2004.01.002  0.548
2003 Robinson LJ, Karlsson NG, Weiss AS, Packer NH. Proteomic Analysis of the Genetic Premature Aging Disease Hutchinson Gilford Progeria Syndrome Reveals Differential Protein Expression and Glycosylation Journal of Proteome Research. 2: 556-557. PMID 14582653 DOI: 10.1021/Pr034035K  0.435
2003 Schulz BL, Packer NH, Karlsson NG. Small-scale analysis of O-linked oligosaccharides from glycoproteins and mucins separated by gel electrophoresis. Analytical Chemistry. 74: 6088-97. PMID 12498206 DOI: 10.1021/Ac025890A  0.577
2002 Wilson NL, Schulz BL, Karlsson NG, Packer NH. Sequential analysis of N- and O-linked glycosylation of 2D-PAGE separated glycoproteins. Journal of Proteome Research. 1: 521-9. PMID 12645620 DOI: 10.1021/Pr025538D  0.547
2002 Ball MS, Hollis-Watts K, Karlsson N, Packer N, Willcox M. Purification and chemical characterization of the high molecular weight glycoconjugate fraction of the bovine tear film and comparison to mucins from other sources. Advances in Experimental Medicine and Biology. 506: 341-5. PMID 12613931 DOI: 10.1007/978-1-4615-0717-8_49  0.5
2002 Karlsson NG, Packer NH. Analysis of O-linked reducing oligosaccharides released by an in-line flow system. Analytical Biochemistry. 305: 173-85. PMID 12054446 DOI: 10.1006/Abio.2002.5657  0.494
2002 Schulz BL, Oxley D, Packer NH, Karlsson NG. Identification of two highly sialylated human tear-fluid DMBT1 isoforms: the major high-molecular-mass glycoproteins in human tears. The Biochemical Journal. 366: 511-20. PMID 12015815 DOI: 10.1042/Bj20011876  0.56
2000 Ball MS, Hollis-Watts KN, Karlsson N, Packer N, Willcox MD. PURIFICATION AND CHEMICAL CHARACTERISATION OF THE HIGH MOLECULAR WEIGHT GLYCOCONJUGATE FRACTION OF THE BOVINE TEAR FILM AND COMPARISON TO HUMAN TEARS. Cornea. 19: S74. DOI: 10.1097/00003226-200011002-00010  0.493
1999 Thomsson KA, Karlsson NG, Hansson GC. Liquid chromatography-electrospray mass spectrometry as a tool for the analysis of sulfated oligosaccharides from mucin glycoproteins. Journal of Chromatography. A. 854: 131-9. PMID 10497934 DOI: 10.1016/S0021-9673(99)00625-1  0.325
1998 Thomsson KA, Carlstedt I, Karlsson NG, Karlsson H, Hansson GC. Different O-glycosylation of respiratory mucin glycopeptides from a patient with cystic fibrosis. Glycoconjugate Journal. 15: 823-33. PMID 9870359 DOI: 10.1023/A:1006920219069  0.312
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