Ruth Gates - Publications

Affiliations: 
Hawaii Institute of Marine Biology University of Hawai'i at Manoa, Honolulu, HI 

116 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Shumaker A, Putnam HM, Qiu H, Price DC, Zelzion E, Harel A, Wagner NE, Gates RD, Yoon HS, Bhattacharya D. Genome analysis of the rice coral Montipora capitata. Scientific Reports. 9: 2571. PMID 30796282 DOI: 10.1038/s41598-019-39274-3  0.96
2017 Madin JS, Anderson KD, Andreasen MH, Bridge TCL, Cairns SD, Connolly SR, Darling ES, Diaz M, Falster DS, Franklin EC, Gates RD, Harmer AMT, Hoogenboom MO, Huang D, Keith SA, et al. Corrigendum: The Coral Trait Database, a curated database of trait information for coral species from the global oceans. Scientific Data. 4: 170174. PMID 29206222 DOI: 10.1038/sdata.2017.174  0.96
2017 Cunning R, Muller EB, Gates RD, Nisbet RM. A dynamic bioenergetic model for coral-Symbiodinium symbioses and coral bleaching as an alternate stable state. Journal of Theoretical Biology. PMID 28782552 DOI: 10.1016/j.jtbi.2017.08.003  0.44
2017 Baghdasarian G, Osberg A, Mihora D, Putnam H, Gates RD, Edmunds PJ. Effects of Temperature and pCO2 on Population Regulation of Symbiodinium spp. in a Tropical Reef Coral. The Biological Bulletin. 232: 123-139. PMID 28654331 DOI: 10.1086/692718  1
2017 Cunning R, Gates RD, Edmunds PJ. Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands. Peerj. 5: e3472. PMID 28649474 DOI: 10.7717/peerj.3472  1
2017 Qiu H, Zelzion E, Putnam HM, Gates RD, Wagner NE, Adams DK, Bhattacharya D. Discovery of SCORs: Anciently derived, highly conserved gene-associated repeats in stony corals. Genomics. PMID 28634029 DOI: 10.1016/j.ygeno.2017.06.003  0.96
2017 Putnam HM, Barott KL, Ainsworth TD, Gates RD. The Vulnerability and Resilience of Reef-Building Corals. Current Biology : Cb. 27: R528-R540. PMID 28586690 DOI: 10.1016/j.cub.2017.04.047  0.96
2017 Putnam HM, Adams DK, Zelzion E, Wagner NE, Qiu H, Mass T, Falkowski PG, Gates RD, Bhattacharya D. Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral Montipora capitata. Peerj. 5: e3319. PMID 28533967 DOI: 10.7717/peerj.3319  0.96
2017 Sogin EM, Putnam HM, Nelson CE, Anderson P, Gates RD. Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities. Environmental Microbiology Reports. PMID 28464532 DOI: 10.1111/1758-2229.12541  0.96
2017 van Oppen MJ, Gates RD, Blackall LL, Cantin N, Chakravarti LJ, Chan WY, Cormick C, Crean A, Damjanovic K, Epstein H, Harrison PL, Jones TA, Miller M, Pears RJ, Peplow LM, et al. Shifting paradigms in restoration of the world's coral reefs. Global Change Biology. PMID 28247459 DOI: 10.1111/gcb.13647  0.96
2016 Hernandez-Agreda A, Gates RD, Ainsworth TD. Defining the Core Microbiome in Corals' Microbial Soup. Trends in Microbiology. PMID 27919551 DOI: 10.1016/j.tim.2016.11.003  0.32
2016 Putnam HM, Davidson JM, Gates RD. Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals. Evolutionary Applications. 9: 1165-1178. PMID 27695524 DOI: 10.1111/eva.12408  0.96
2016 Ainsworth TD, Gates RD. OCEAN BIOLOGY. Corals' microbial sentinels. Science (New York, N.Y.). 352: 1518-9. PMID 27339969 DOI: 10.1126/science.aad9957  0.32
2016 Bhattacharya D, Agrawal S, Aranda M, Baumgarten S, Belcaid M, Drake JL, Erwin D, Foret S, Gates RD, Gruber DF, Kamel B, Lesser MP, Levy O, Liew YJ, MacManes M, et al. Comparative genomics explains the evolutionary success of reef-forming corals. Elife. 5. PMID 27218454 DOI: 10.7554/eLife.13288  1
2016 Mass T, Putnam HM, Drake JL, Zelzion E, Gates RD, Bhattacharya D, Falkowski PG. Temporal and spatial expression patterns of biomineralization proteins during early development in the stony coral Pocillopora damicornis. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27122561 DOI: 10.1098/rspb.2016.0322  1
2016 Madin JS, Anderson KD, Andreasen MH, Bridge TC, Cairns SD, Connolly SR, Darling ES, Diaz M, Falster DS, Franklin EC, Gates RD, Hoogenboom MO, Huang D, Keith SA, Kosnik MA, et al. The Coral Trait Database, a curated database of trait information for coral species from the global oceans. Scientific Data. 3: 160017. PMID 27023900 DOI: 10.1038/sdata.2016.17  1
2016 Davies N, Field D, Gavaghan D, Holbrook SJ, Planes S, Troyer M, Bonsall M, Claudet J, Roderick G, Schmitt RJ, Zettler LA, Berteaux V, Bossin HC, Cabasse C, Collin A, ... ... Gates R, et al. Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium. Gigascience. 5: 14. PMID 26998258 DOI: 10.1186/s13742-016-0118-5  1
2016 Hédouin LS, Wolf RE, Phillips J, Gates RD. Improving the ecological relevance of toxicity tests on scleractinian corals: Influence of season, life stage, and seawater temperature. Environmental Pollution (Barking, Essex : 1987). 213: 240-253. PMID 26907701 DOI: 10.1016/j.envpol.2016.01.086  0.4
2015 Cunning R, Yost DM, Guarinello ML, Putnam HM, Gates RD. Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa. Plos One. 10: e0145099. PMID 26713847 DOI: 10.1371/journal.pone.0145099  1
2015 Putnam HM, Gates RD. Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions. The Journal of Experimental Biology. 218: 2365-72. PMID 26246609 DOI: 10.1242/jeb.123018  0.96
2015 Burns J, Delparte D, Gates RD, Takabayashi M. Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs. Peerj. 3: e1077. PMID 26207190 DOI: 10.7717/peerj.1077  1
2015 Pochon X, Forsman ZH, Spalding HL, Padilla-Gamiño JL, Smith CM, Gates RD. Depth specialization in mesophotic corals (Leptoseris spp.) and associated algal symbionts in Hawai'i. Royal Society Open Science. 2: 140351. PMID 26064599 DOI: 10.1098/rsos.140351  1
2015 D Ainsworth T, Krause L, Bridge T, Torda G, Raina JB, Zakrzewski M, Gates RD, Padilla-Gamiño JL, Spalding HL, Smith C, Woolsey ES, Bourne DG, Bongaerts P, Hoegh-Guldberg O, Leggat W. The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. The Isme Journal. PMID 25885563 DOI: 10.1038/ismej.2015.39  0.52
2015 van Oppen MJ, Oliver JK, Putnam HM, Gates RD. Building coral reef resilience through assisted evolution. Proceedings of the National Academy of Sciences of the United States of America. 112: 2307-13. PMID 25646461 DOI: 10.1073/pnas.1422301112  1
2015 Burns JHR, Delparte D, Gates RD, Takabayashi M. Utilizing underwater three-dimensional modeling to enhance ecological and biological studies of coral reefs International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences - Isprs Archives. 40: 61-66. DOI: 10.5194/isprsarchives-XL-5-W5-61-2015  1
2015 Roth MS, Padilla-Gamiño JL, Pochon X, Bidigare RR, Gates RD, Smith CM, Spalding HL. Fluorescent proteins in dominant mesophotic reef-building corals Marine Ecology Progress Series. 521: 63-79. DOI: 10.3354/meps11108  1
2015 Edmunds PJ, Steneck R, Albright R, Carpenter RC, Chui APY, Fan TY, Harii S, Kitano H, Kurihara H, Legendre L, Mitarai S, Muko S, Nozawa Y, Padilla-Gamino J, Price NN, ... ... Gates RD, et al. Geographic variation in long-term trajectories of change in coral recruitment: A global-to-local perspective Marine and Freshwater Research. 66: 609-622. DOI: 10.1071/MF14139  1
2015 Stat M, Yost DM, Gates RD. Geographic structure and host specificity shape the community composition of symbiotic dinoflagellates in corals from the Northwestern Hawaiian Islands Coral Reefs. 34: 1075-1086. DOI: 10.1007/s00338-015-1320-0  1
2015 Gibbin EM, Putnam HM, Gates RD, Nitschke MR, Davy SK. Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals Marine Biology. 162: 717-723. DOI: 10.1007/s00227-015-2617-9  1
2014 Sogin EM, Anderson P, Williams P, Chen CS, Gates RD. Application of 1H-NMR metabolomic profiling for reef-building corals. Plos One. 9: e111274. PMID 25354140 DOI: 10.1371/journal.pone.0111274  1
2014 Edmunds PJ, Adjeroud M, Baskett ML, Baums IB, Budd AF, Carpenter RC, Fabina NS, Fan TY, Franklin EC, Gross K, Han X, Jacobson L, Klaus JS, McClanahan TR, O'Leary JK, ... ... Gates RD, et al. Persistence and change in community composition of reef corals through present, past, and future climates. Plos One. 9: e107525. PMID 25272143 DOI: 10.1371/journal.pone.0107525  1
2014 Gold DA, Gates RD, Jacobs DK. The early expansion and evolutionary dynamics of POU class genes. Molecular Biology and Evolution. 31: 3136-47. PMID 25261405 DOI: 10.1093/molbev/msu243  1
2014 Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, ... ... Gates RD, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. Plos Biology. 12: e1001889. PMID 24959919 DOI: 10.1371/journal.pbio.1001889  1
2014 Pochon X, Putnam HM, Gates RD. Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution. Peerj. 2: e394. PMID 24883254 DOI: 10.7717/peerj.394  1
2014 Padilla-Gamiño JL, Hédouin L, Waller RG, Smith D, Truong W, Gates RD. Sedimentation and the reproductive biology of the Hawaiian reef-building coral Montipora capitata. The Biological Bulletin. 226: 8-18. PMID 24648203  1
2014 Gibbin EM, Putnam HM, Davy SK, Gates RD. Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells. The Journal of Experimental Biology. 217: 1963-9. PMID 24625648 DOI: 10.1242/jeb.099549  0.4
2014 Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J, Drummond A, Faith DP, Geller J, Gilbert J, Glöckner FO, Hirsch PR, Leong JA, Meyer C, Obst M, Planes S, ... ... Gates RD, et al. The founding charter of the Genomic Observatories Network. Gigascience. 3: 2. PMID 24606731 DOI: 10.1186/2047-217X-3-2  1
2014 Edmunds PJ, Pochon X, Levitan DR, Yost DM, Belcaid M, Putnam HM, Gates RD. Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands Marine Ecology Progress Series. 506: 129-144. DOI: 10.3354/meps10808  1
2014 Edmunds PJ, Burgess SC, Putnam HM, Baskett ML, Bramanti L, Fabina NS, Han X, Lesser MP, Madin JS, Wall CB, Yost DM, Gates RD. Evaluating the causal basis of ecological success within the scleractinia: an integral projection model approach Marine Biology. 161: 2719-2734. DOI: 10.1007/s00227-014-2547-y  0.4
2014 Pochon X, Gates RD, Vik D, Edmunds PJ. Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Soritesorbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands Marine Biology. DOI: 10.1007/s00227-014-2507-6  1
2013 Yost DM, Wang LH, Fan TY, Chen CS, Lee RW, Sogin E, Gates RD. Diversity in skeletal architecture influences biological heterogeneity and Symbiodinium habitat in corals. Zoology (Jena, Germany). 116: 262-9. PMID 23992772 DOI: 10.1016/j.zool.2013.06.001  1
2013 Fabina NS, Putnam HM, Franklin EC, Stat M, Gates RD. Symbiotic specificity, association patterns, and function determine community responses to global changes: defining critical research areas for coral-Symbiodinium symbioses. Global Change Biology. 19: 3306-16. PMID 23847174 DOI: 10.1111/gcb.12320  1
2013 Stat M, Pochon X, Franklin EC, Bruno JF, Casey KS, Selig ER, Gates RD. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecology and Evolution. 3: 1317-29. PMID 23762518 DOI: 10.1002/ece3.556  1
2013 Hédouin L, Gates RD. Assessing fertilization success of the coral Montipora capitata under copper exposure: Does the night of spawning matter? Marine Pollution Bulletin. 66: 221-224. PMID 23246128 DOI: 10.1016/j.marpolbul.2012.11.020  1
2013 Briggs RA, Padilla-Gamiño JL, Bidigare RR, Gates RD, Ruttenberg KC. Impact of coral spawning on the biogeochemistry of a Hawaiian reef Estuarine, Coastal and Shelf Science. 134: 57-68. DOI: 10.1016/j.ecss.2013.09.013  1
2013 Lesser MP, Stat M, Gates RD. The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists Coral Reefs. 32: 603-611. DOI: 10.1007/s00338-013-1051-z  1
2013 Padilla-Gamiño JL, Bidigare RR, Barshis DJ, Alamaru A, Hédouin L, Hernández-Pech X, Kandel F, Leon Soon S, Roth MS, Rodrigues LJ, Grottoli AG, Portocarrero C, Wagenhauser SA, Buttler F, Gates RD. Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata Coral Reefs. 32: 137-152. DOI: 10.1007/s00338-012-0957-1  1
2013 Putnam HM, Mayfield AB, Fan TY, Chen CS, Gates RD. The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2 Marine Biology. 160: 2157-2173. DOI: 10.1007/s00227-012-2129-9  1
2012 Edmunds PJ, Putnam HM, Gates RD. Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lutea. The Biological Bulletin. 223: 226-35. PMID 23111134  1
2012 Fabina NS, Putnam HM, Franklin EC, Stat M, Gates RD. Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. Plos One. 7: e44970. PMID 23028711 DOI: 10.1371/journal.pone.0044970  1
2012 Putnam HM, Stat M, Pochon X, Gates RD. Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Proceedings. Biological Sciences / the Royal Society. 279: 4352-61. PMID 22933373 DOI: 10.1098/rspb.2012.1454  1
2012 Stat M, Baker AC, Bourne DG, Correa AM, Forsman Z, Huggett MJ, Pochon X, Skillings D, Toonen RJ, van Oppen MJ, Gates RD. Molecular delineation of species in the coral holobiont. Advances in Marine Biology. 63: 1-65. PMID 22877610 DOI: 10.1016/B978-0-12-394282-1.00001-6  1
2012 Padilla-Gamiño JL, Pochon X, Bird C, Concepcion GT, Gates RD. From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. Plos One. 7: e38440. PMID 22701642 DOI: 10.1371/journal.pone.0038440  1
2012 Pochon X, Putnam HM, Burki F, Gates RD. Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. Plos One. 7: e29816. PMID 22238660 DOI: 10.1371/journal.pone.0029816  1
2012 Franklin EC, Stat M, Pochon X, Putnam HM, Gates RD. GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Molecular Ecology Resources. 12: 369-73. PMID 22018222 DOI: 10.1111/j.1755-0998.2011.03081.x  1
2012 Padilla-Gamiño JL, Gates RD. Spawning dynamics in the Hawaiian reef-building coral Montipora capitata Marine Ecology Progress Series. 449: 145-160. DOI: 10.3354/meps09530  1
2012 Padilla-Gamiño JL, Hanson KM, Stat M, Gates RD. Phenotypic plasticity of the coral Porites rus: Acclimatization responses to a turbid environment Journal of Experimental Marine Biology and Ecology. 434: 71-80. DOI: 10.1016/j.jembe.2012.08.006  1
2012 Krueger T, Gates RD. Cultivating endosymbionts - Host environmental mimics support the survival of Symbiodinium C15 ex hospite Journal of Experimental Marine Biology and Ecology. 413: 169-176. DOI: 10.1016/j.jembe.2011.12.002  1
2012 Takabayashi M, Adams LM, Pochon X, Gates RD. Genetic diversity of free-living Symbiodinium in surface water and sediment of Hawai'i and Florida Coral Reefs. 31: 157-167. DOI: 10.1007/s00338-011-0832-5  1
2011 Hédouin L, Metian M, Gates RD. Ecotoxicological approach for assessing the contamination of a Hawaiian coral reef ecosystem (Honolua Bay, Maui) by metals and a metalloid. Marine Environmental Research. 71: 149-61. PMID 21277629 DOI: 10.1016/j.marenvres.2010.12.006  1
2011 Stat M, Bird CE, Pochon X, Chasqui L, Chauka LJ, Concepcion GT, Logan D, Takabayashi M, Toonen RJ, Gates RD. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. Plos One. 6: e15854. PMID 21246044 DOI: 10.1371/journal.pone.0015854  1
2011 Wagner D, Pochon X, Irwin L, Toonen RJ, Gates RD. Azooxanthellate? Most Hawaiian black corals contain Symbiodinium. Proceedings. Biological Sciences / the Royal Society. 278: 1323-8. PMID 20961904 DOI: 10.1098/rspb.2010.1681  1
2011 Gates RD, Ainsworth TD. The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals Journal of Experimental Marine Biology and Ecology. 408: 94-101. DOI: 10.1016/j.jembe.2011.07.029  1
2011 Padilla-Gamiño JL, Weatherby TM, Waller RG, Gates RD. Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata Coral Reefs. 30: 371-380. DOI: 10.1007/s00338-010-0700-8  1
2010 Lesser MP, Slattery M, Stat M, Ojimi M, Gates RD, Grottoli A. Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics. Ecology. 91: 990-1003. PMID 20462114 DOI: 10.1890/09-0313.1  1
2010 Pochon X, Gates RD. A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i. Molecular Phylogenetics and Evolution. 56: 492-7. PMID 20371383 DOI: 10.1016/j.ympev.2010.03.040  1
2010 Barshis DJ, Stillman JH, Gates RD, Toonen RJ, Smith LW, Birkeland C. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity? Molecular Ecology. 19: 1705-20. PMID 20345691 DOI: 10.1111/j.1365-294X.2010.04574.x  1
2010 Ainsworth TD, Thurber RV, Gates RD. The future of coral reefs: a microbial perspective. Trends in Ecology & Evolution. 25: 233-40. PMID 20006405 DOI: 10.1016/j.tree.2009.11.001  1
2010 Yancey PH, Heppenstall M, Ly S, Andrell RM, Gates RD, Carter VL, Hagedorn M. Betaines and dimethylsulfoniopropionate as major osmolytes in cnidaria with endosymbiotic dinoflagellates. Physiological and Biochemical Zoology : Pbz. 83: 167-73. PMID 19922288 DOI: 10.1086/644625  1
2010 Hofmann GE, Barry JP, Edmunds PJ, Gates RD, Hutchins DA, Klinger T, Sewell MA. The effect of Ocean acidification on calcifying organisms in marine ecosystems: An organism-to-ecosystem perspective Annual Review of Ecology, Evolution, and Systematics. 41: 127-147. DOI: 10.1146/annurev.ecolsys.110308.120227  1
2010 Pochon X, Stat M, Takabayashi M, Chasqui L, Chauka LJ, Logan DDK, Gates RD. Comparison of endosymbiotic and free-living Symbiodinium (dinophyceae) diversity in a hawaiian reef environment Journal of Phycology. 46: 53-65. DOI: 10.1111/j.1529-8817.2009.00797.x  1
2010 Mayfield AB, Hsiao YY, Fan TY, Chen CS, Gates RD. Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seriatopora hystrix Journal of Experimental Marine Biology and Ecology. 395: 215-222. DOI: 10.1016/j.jembe.2010.09.007  1
2010 Green DH, Edmunds PJ, Pochon X, Gates RD. The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin Islands Journal of Experimental Marine Biology and Ecology. 384: 18-29. DOI: 10.1016/j.jembe.2009.12.008  1
2010 Palmer CV, Gates RD. Skeletal eroding band in Hawaiian corals Coral Reefs. 29: 469-469. DOI: 10.1007/s00338-010-0597-2  1
2009 Mayfield AB, Hirst MB, Gates RD. Gene expression normalization in a dual-compartment system: a real-time quantitative polymerase chain reaction protocol for symbiotic anthozoans. Molecular Ecology Resources. 9: 462-70. PMID 21564675 DOI: 10.1111/j.1755-0998.2008.02349.x  1
2009 Chan YL, Pochon X, Fisher MA, Wagner D, Concepcion GT, Kahng SE, Toonen RJ, Gates RD. Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris. Bmc Ecology. 9: 21. PMID 19747389 DOI: 10.1186/1472-6785-9-21  1
2009 Hédouin L, Reichelt-Brushett AJ, Gates RD. Assessment of metals and a metalloid in sediments from Hawaiian coral reef ecosystems. Marine Pollution Bulletin. 58: 1759-65. PMID 19698959 DOI: 10.1016/j.marpolbul.2009.07.014  1
2009 Palmer CV, Roth MS, Gates RD. Red fluorescent protein responsible for pigmentation in trematode-infected Porites compressa tissues. The Biological Bulletin. 216: 68-74. PMID 19218493  1
2009 Stat M, Pochon X, Cowie ROM, Gates RD. Specificity in communities of symbiodinium in corals from Johnston Atoll Marine Ecology Progress Series. 386: 83-96. DOI: 10.3354/meps08080  1
2009 Fitt WK, Gates RD, Hoegh-Guldberg O, Bythell JC, Jatkar A, Grottoli AG, Gomez M, Fisher P, Lajuenesse TC, Pantos O, Iglesias-Prieto R, Franklin DJ, Rodrigues LJ, Torregiani JM, van Woesik R, et al. Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: The host does matter in determining the tolerance of corals to bleaching Journal of Experimental Marine Biology and Ecology. 373: 102-110. DOI: 10.1016/j.jembe.2009.03.011  1
2009 Olson ND, Ainsworth TD, Gates RD, Takabayashi M. Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates Journal of Experimental Marine Biology and Ecology. 371: 140-146. DOI: 10.1016/j.jembe.2009.01.012  1
2009 Van Oppen MJH, Leong JA, Gates RD. Coral-virus interactions: A double-edged sword? Symbiosis. 47: 1-8.  1
2008 Stat M, Morris E, Gates RD. Functional diversity in coral-dinoflagellate symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 105: 9256-61. PMID 18591663 DOI: 10.1073/pnas.0801328105  1
2008 Edmunds PJ, Gates RD. Acclimatization in tropical reef corals Marine Ecology Progress Series. 361: 307-310. DOI: 10.3354/meps07556  1
2008 Stat M, Gates RD. Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii Biological Invasions. 10: 579-583. DOI: 10.1007/s10530-007-9167-0  1
2008 Manning MM, Gates RD. Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef Limnology and Oceanography. 53: 1853-1861.  1
2007 Apprill AM, Gates RD. Recognizing diversity in coral symbiotic dinoflagellate communities. Molecular Ecology. 16: 1127-34. PMID 17391401 DOI: 10.1111/j.1365-294X.2006.03214.x  1
2007 Mayfield AB, Gates RD. Osmoregulation in anthozoan-dinoflagellate symbiosis. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 147: 1-10. PMID 17317249 DOI: 10.1016/j.cbpa.2006.12.042  1
2007 Biel KY, Gates RD, Muscatine L. Effects of free amino acids on the photosynthetic carbon metabolism of symbiotic dinoflagellates Russian Journal of Plant Physiology. 54: 171-183. DOI: 10.1134/S1021443707020033  1
2007 Leggat W, Ainsworth T, Bythell J, Dove S, Gates R, Hoegh-Guldberg O, Iglesias-Prieto R, Yellowlees D. The hologenome theory disregards the coral holobiont Nature Reviews Microbiology. 5. DOI: 10.1038/nrmicro1635-c1  1
2007 Lesser MP, Bythell JC, Gates RD, Johnstone RW, Hoegh-Guldberg O. Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data Journal of Experimental Marine Biology and Ecology. 346: 36-44. DOI: 10.1016/j.jembe.2007.02.015  1
2007 Hoegh-Guldberg O, Muller-Parker G, Cook CB, Gates RD, Gladfelter E, Trench RK, Weis VM. Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis Coral Reefs. 26: 731-739. DOI: 10.1007/s00338-007-0320-0  1
2007 Apprill AM, Bidigare RR, Gates RD. Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes Coral Reefs. 26: 387-397. DOI: 10.1007/s00338-007-0209-y  1
2006 van Oppen MJ, Gates RD. Conservation genetics and the resilience of reef-building corals. Molecular Ecology. 15: 3863-83. PMID 17054489 DOI: 10.1111/j.1365-294X.2006.03026.x  1
2006 Gleason DF, Edmunds PJ, Gates RD. Ultraviolet radiation effects on the behavior and recruitment of larvae from the reef coral Porites astreoides Marine Biology. 148: 503-512. DOI: 10.1007/s00227-005-0098-y  1
2006 Ridgway T, Gates RD. Why are there so few genetic markers available for coral population analyses? Symbiosis. 41: 1-7.  1
2005 Edmunds PJ, Gates RD, Leggat W, Hoegh-Guldberg O, Allen-Requa L. The effect of temperature on the size and population density of dinoflagellates in larvae of the reef coral Porites astreoides Invertebrate Biology. 124: 185-193. DOI: 10.1111/j.1744-7410.2005.00018.x  1
2004 Bebenek IG, Gates RD, Morris J, Hartenstein V, Jacobs DK. sine oculis in basal Metazoa. Development Genes and Evolution. 214: 342-51. PMID 15221378 DOI: 10.1007/s00427-004-0407-3  1
2004 Edmunds PJ, Gates RD. Size-dependent differences in the photophysiology of the reef coral Porites astreoides. The Biological Bulletin. 206: 61-4. PMID 15111360  1
2003 Lee SE, Gates RD, Jacobs DK. Gene fishing: the use of a simple protocol to isolate multiple homeodomain classes from diverse invertebrate taxa. Journal of Molecular Evolution. 56: 509-16. PMID 12718333 DOI: 10.1007/s00239-002-2421-2  1
2003 Edmunds PJ, Gates RD. Has Coral Bleaching Delayed Our Understanding of Fundamental Aspects of Coral-Dinoflagellate Symbioses? Bioscience. 53: 976-980.  1
2003 Edmunds PJ, Gates RD, Gleason DF. The tissue composition of Montastraea franksi during a natural bleaching event in the Florida Keys Coral Reefs. 22: 54-62.  1
2003 Jacobs DK, Gates RD. Developmental genes and the reconstruction of metazoan evolution - Implications of evolutionary loss, limits on inference of ancestry and type 2 errors Integrative and Comparative Biology. 43: 11-18.  1
2002 Ramachandra NB, Gates RD, Ladurner P, Jacobs DK, Hartenstein V. Embryonic development in the primitive bilaterian Neochildia fusca: normal morphogenesis and isolation of POU genes Brn-1 and Brn-3. Development Genes and Evolution. 212: 55-69. PMID 11914937 DOI: 10.1007/s00427-001-0207-y  1
2002 Edmunds PJ, Gates RD. Normalizing physiological data for scleractinian corals Coral Reefs. 21: 193-197.  1
2001 Lee SE, Gates RD, Jacobs DK. The isolation of a Distal-less gene fragment from two molluscs. Development Genes and Evolution. 211: 506-8. PMID 11702201 DOI: 10.1007/s00427-001-0184-1  1
2001 Edmunds P, Gates R, Gleason D. The biology of larvae from the reef coral Porites astreoides, and their response to temperature disturbances Marine Biology. 139: 981-989. DOI: 10.1007/s002270100634  1
2000 Jacobs DK, Wray CG, Wedeen CJ, Kostriken R, DeSalle R, Staton JL, Gates RD, Lindberg DR. Molluscan engrailed expression, serial organization, and shell evolution. Evolution & Development. 2: 340-7. PMID 11256378 DOI: 10.1046/j.1525-142X.2000.00077.x  1
1999 Gates RD, Bil KY, Muscatine L. The influence of an anthozoan 'host factor' on the physiology of a symbiotic dinoflagellate Journal of Experimental Marine Biology and Ecology. 232: 241-259. DOI: 10.1016/S0022-0981(98)00114-2  1
1999 Gates RD, Eomund PJ. The physiological mechanisms of acclimatization in tropical reef corals American Zoologist. 39: 30-43.  1
1998 Muscatine L, Ferrier-Pagès C, Blackburn A, Gates RD, Baghdasarian G, Allemand D. Cell-specific density of symbiotic dinoflagellates in tropical anthozoans Coral Reefs. 17: 329-337. DOI: 10.1007/s003380050133  1
1995 Gates RD, Hoegh-Guldberg O, McFall-Ngai MJ, Bil KY, Muscatine L. Free amino acids exhibit anthozoan "host factor" activity: they induce the release of photosynthate from symbiotic dinoflagellates in vitro. Proceedings of the National Academy of Sciences of the United States of America. 92: 7430-4. PMID 11607567  1
1994 Muscatine L, Gates RD, LaFontaine I. Do symbiotic dinoflagellates secrete lipid droplets? Limnology and Oceanography. 39: 925-929.  1
1992 Gates RD, Muscatine L. Three methods for isolating viable anthozoan endoderm cells with their intracellular symbiotic dinoflagellates Coral Reefs. 11: 143-145. DOI: 10.1007/BF00255468  1
1992 Gates RD, Baghdasarian G, Muscatine L. Temperature stress causes host cell detachment in symbiotic cnidarians: implications for coral bleaching Biological Bulletin. 182: 324-332.  1
1990 Gates RD. Seawater temperature and sublethal coral bleaching in Jamaica Coral Reefs. 8: 193-197. DOI: 10.1007/BF00265010  1
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