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Burcu Ozden, PhD - Publications

Affiliations: 
2020- Karaca Lab Izmir Biomedicine and Genome Center 
 2020- Basic and Translational Research Program Dokuz Eylul University, İzmir, Turkey 
Area:
Protein Dynamics, Protein-Protein Interactions, Molecular Modeling, Molecular Dynamics Simulations
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7 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ozden B, Şamiloğlu E, Özsan A, Erguven M, Yükrük C, Koşaca M, Oktayoğlu M, Menteş M, Arslan N, Karakülah G, Barlas AB, Savaş B, Karaca E. Benchmarking the accuracy of structure-based binding affinity predictors on Spike-ACE2 deep mutational interaction set. Proteins. PMID 37991066 DOI: 10.1002/prot.26645  0.616
2023 Ozden B, Kryshtafovych A, Karaca E. The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15. Proteins. PMID 37861057 DOI: 10.1002/prot.26598  0.644
2023 Ozden B, Kryshtafovych A, Karaca E. The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15. Biorxiv : the Preprint Server For Biology. PMID 37503072 DOI: 10.1101/2023.07.10.548341  0.645
2023 Ozden B, Boopathi R, Barlas AB, Lone IN, Bednar J, Petosa C, Kale S, Hamiche A, Angelov D, Dimitrov S, Karaca E. Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox. Journal of Chemical Information and Modeling. 63: 3839-3853. PMID 37307148 DOI: 10.1021/acs.jcim.2c01520  0.556
2022 Hiz S, Kiliç S, Bademci G, Karakulak T, Erdoğan A, Özden B, Eresen Ç, Erdal E, Yiş U, Tekin M, Karakülah G, Karaca E, Öztürk M. mutations associated with neurodevelopmental disorder are located on a short amino acid stretch of the anticodon-binding domain. Turkish Journal of Biology = Turk Biyoloji Dergisi. 46: 458-464. PMID 37529793 DOI: 10.55730/1300-0152.2631  0.584
2022 Cingoz S, Soydemir D, Oner TO, Karaca E, Ozden B, Kurul SH, Bayram E, Coe BP, Nickerson DA, Eichler EE. Novel biallelic variants affecting the OTU domain of the gene OTUD6B associate with severe intellectual disability syndrome and molecular dynamics simulations. European Journal of Medical Genetics. 104497. PMID 35430327 DOI: 10.1016/j.ejmg.2022.104497  0.59
2021 Ozden B, Kryshtafovych A, Karaca E. Assessment of the CASP14 Assembly Predictions. Proteins. PMID 34337786 DOI: 10.1002/prot.26199  0.627
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