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Burcu Ozden, PhD - Publications

Affiliations: 
2020- Karaca Lab Izmir Biomedicine and Genome Center 
 2020- Basic and Translational Research Program Dokuz Eylul University, İzmir, Turkey 
Area:
Protein Dynamics, Protein-Protein Interactions, Molecular Modeling, Molecular Dynamics Simulations
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7/50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ozden B, Şamiloğlu E, Özsan A, Erguven M, Yükrük C, Koşaca M, Oktayoğlu M, Menteş M, Arslan N, Karakülah G, Barlas AB, Savaş B, Karaca E. Benchmarking the accuracy of structure-based binding affinity predictors on Spike-ACE2 deep mutational interaction set. Proteins. PMID 37991066 DOI: 10.1002/prot.26645  0.616
2023 Ozden B, Kryshtafovych A, Karaca E. The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15. Proteins. PMID 37861057 DOI: 10.1002/prot.26598  0.644
2023 Ozden B, Kryshtafovych A, Karaca E. The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15. Biorxiv : the Preprint Server For Biology. PMID 37503072 DOI: 10.1101/2023.07.10.548341  0.645
2023 Ozden B, Boopathi R, Barlas AB, Lone IN, Bednar J, Petosa C, Kale S, Hamiche A, Angelov D, Dimitrov S, Karaca E. Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox. Journal of Chemical Information and Modeling. 63: 3839-3853. PMID 37307148 DOI: 10.1021/acs.jcim.2c01520  0.556
2022 Hiz S, Kiliç S, Bademci G, Karakulak T, Erdoğan A, Özden B, Eresen Ç, Erdal E, Yiş U, Tekin M, Karakülah G, Karaca E, Öztürk M. mutations associated with neurodevelopmental disorder are located on a short amino acid stretch of the anticodon-binding domain. Turkish Journal of Biology = Turk Biyoloji Dergisi. 46: 458-464. PMID 37529793 DOI: 10.55730/1300-0152.2631  0.584
2022 Cingoz S, Soydemir D, Oner TO, Karaca E, Ozden B, Kurul SH, Bayram E, Coe BP, Nickerson DA, Eichler EE. Novel biallelic variants affecting the OTU domain of the gene OTUD6B associate with severe intellectual disability syndrome and molecular dynamics simulations. European Journal of Medical Genetics. 104497. PMID 35430327 DOI: 10.1016/j.ejmg.2022.104497  0.59
2021 Ozden B, Kryshtafovych A, Karaca E. Assessment of the CASP14 Assembly Predictions. Proteins. PMID 34337786 DOI: 10.1002/prot.26199  0.627
Low-probability matches (unlikely to be authored by this person)
2017 Yilmazer B, Yagci ZB, Bakar E, Ozden B, Ulgen K, Ozkirimli E. Investigation of novel pharmacological chaperones for Gaucher Disease. Journal of Molecular Graphics & Modelling. 76: 364-378. PMID 28763689 DOI: 10.1016/J.Jmgm.2017.07.014  0.172
2005 Topalan M, Ozden BC, Olgaç V, Aydin A. Association of vascular injury with the proximal side branch and assessment of thrombosis rates in a new microarterial traction model. Journal of Reconstructive Microsurgery. 21: 317-22. PMID 15971167 DOI: 10.1055/s-2005-871774  0.117
2005 Topalan M, Ozden BC, Olgaç V, Aydin A. Association of vascular injury with the proximal side branch and assessment of thrombosis rates in a new microarterial traction model. Journal of Reconstructive Microsurgery. 21: 317-22. PMID 15971167 DOI: 10.1055/s-2005-871774  0.117
2023 Ozden B, Zhang T, Liu M, Fest A, Pearson DA, Khan E, Uprety S, Razon JE, Cherry J, Fujisawa K, Liu H, Perea-López N, Wang K, Isaacs-Smith T, Park M, et al. Engineering Vacancies for the Creation of Antisite Defects in Chemical Vapor Deposition Grown Monolayer MoS and WS via Proton Irradiation. Acs Nano. PMID 38052014 DOI: 10.1021/acsnano.3c07752  0.09
2006 Aslan A, Emekli U, Ozden BC, Bilgiç B, Kesim SN. Osseous hyperplasia of the glenoid fossa. Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontics. 101: e71-5. PMID 16504855 DOI: 10.1016/j.tripleo.2004.05.008  0.088
2006 Aslan A, Emekli U, Ozden BC, Bilgiç B, Kesim SN. Osseous hyperplasia of the glenoid fossa. Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontics. 101: e71-5. PMID 16504855 DOI: 10.1016/j.tripleo.2004.05.008  0.088
2012 Hocaoğlu E, Özden BÇ, Aydın H. Lower eyelid reconstruction in a paediatric face: a one-stage aesthetic approach using the versatile temporoparietal fascia flap. Journal of Plastic, Reconstructive & Aesthetic Surgery : Jpras. 65: e246-9. PMID 22459794 DOI: 10.1016/j.bjps.2012.02.025  0.084
2005 Karabulut AB, Ozden BC, Onel D, Demiryont M. Management of airway obstruction in a severe case of juvenile hyaline fibromatosis. Annals of Plastic Surgery. 54: 328-30. PMID 15725846  0.083
2005 Karabulut AB, Ozden BC, Onel D, Demiryont M. Management of airway obstruction in a severe case of juvenile hyaline fibromatosis. Annals of Plastic Surgery. 54: 328-30. PMID 15725846  0.083
2002 Ozkan A, Cizmeci O, Aydin H, Ozden BC, Tümerdem B, Emekli U, Asoğlu O, Bozfakioğlu Y. The use of the ipsilateral versus contralateral pedicle and vertical versus horizontal flap inset models in TRAM flap breast reconstruction: the aesthetic outcome. Aesthetic Plastic Surgery. 26: 451-6. PMID 12621568 DOI: 10.1007/s00266-002-1495-y  0.077
2002 Ozkan A, Cizmeci O, Aydin H, Ozden BC, Tümerdem B, Emekli U, Asoğlu O, Bozfakioğlu Y. The use of the ipsilateral versus contralateral pedicle and vertical versus horizontal flap inset models in TRAM flap breast reconstruction: the aesthetic outcome. Aesthetic Plastic Surgery. 26: 451-6. PMID 12621568 DOI: 10.1007/s00266-002-1495-y  0.077
2015 Ziylan O, Acar Ö, Özden BC, Tefik T, Dönmez Mİ, Oktar T. A practical approach for the correction of iatrogenic penile skin loss in children: Scrotal embedding technique. Turkish Journal of Urology. 41: 235-8. PMID 26623155 DOI: 10.5152/tud.2015.17048  0.074
2012 Kuvat SV, Keklik B, Özden BC, Uçar A, Cizmeci O. Major donor area complication after a mandibular reconstruction with an osseous fibular free flap: pseudo-compartment syndrome. The Journal of Craniofacial Surgery. 23: 499-501. PMID 22421858 DOI: 10.1097/SCS.0b013e31824cd452  0.073
2010 Güven E, Başaran K, Yazar M, Ozden BÇ, Kuvat SV, Aydin H. Electrothermal bipolar vessel sealer in endoscope-assisted latissumus dorsi flap harvesting. Journal of Laparoendoscopic & Advanced Surgical Techniques. Part A. 20: 735-42. PMID 20874418 DOI: 10.1089/lap.2010.0056  0.07
2010 Güven E, Başaran K, Yazar M, Ozden BÇ, Kuvat SV, Aydin H. Electrothermal bipolar vessel sealer in endoscope-assisted latissumus dorsi flap harvesting. Journal of Laparoendoscopic & Advanced Surgical Techniques. Part A. 20: 735-42. PMID 20874418 DOI: 10.1089/lap.2010.0056  0.07
2004 Topalan M, Ozden BC, Aydin A, Erer M. Use of free serratus anterior muscle slips for the reconstruction of dorsal-side defects of the hand resulting from hot press injury. The Journal of Burn Care & Rehabilitation. 25: 346-8. PMID 15247833 DOI: 10.1097/01.bcr.0000132184.00884.74  0.069
2004 Topalan M, Ozden BC, Aydin A, Erer M. Use of free serratus anterior muscle slips for the reconstruction of dorsal-side defects of the hand resulting from hot press injury. The Journal of Burn Care & Rehabilitation. 25: 346-8. PMID 15247833 DOI: 10.1097/01.bcr.0000132184.00884.74  0.069
2004 Aydin A, Özden BC. Dorsal Metacarpal Island Flap in Syndactyly Treatment Annals of Plastic Surgery. 52: 43-48. PMID 14676698 DOI: 10.1097/01.sap.0000096440.14697.e5  0.067
2004 Aydin A, Ozden BC, Mezdeği A, Kurul S, Meral R, Solakoğlu S. Effects of amifostine on healing of microvascular anastomoses, flap survival, and nerve regeneration with preoperative or postoperative irradiation. Microsurgery. 24: 392-9. PMID 15378586 DOI: 10.1002/micr.20054  0.067
2004 Aydin A, Ozden BC, Mezdeği A, Kurul S, Meral R, Solakoğlu S. Effects of amifostine on healing of microvascular anastomoses, flap survival, and nerve regeneration with preoperative or postoperative irradiation. Microsurgery. 24: 392-9. PMID 15378586 DOI: 10.1002/micr.20054  0.067
2010 Ozden BC, Arinci A, Aydin A, Buyukbabani N. Self-rejuvenation of the hand. The Journal of Hand Surgery, European Volume. 35: 511-2. PMID 20591931 DOI: 10.1177/1753193409361293  0.055
2010 Ozden BC, Arinci A, Aydin A, Buyukbabani N. Self-rejuvenation of the hand. The Journal of Hand Surgery, European Volume. 35: 511-2. PMID 20591931 DOI: 10.1177/1753193409361293  0.055
2004 Aydin A, Ozden BC, Ozkan T. Surgical management of the hand in Freeman-Sheldon Syndrome. Annals of Plastic Surgery. 53: 301-2. PMID 15480028 DOI: 10.1097/01.sap.0000136303.75925.19  0.049
2004 Aydin A, Ozden BC, Ozkan T. Surgical management of the hand in Freeman-Sheldon Syndrome. Annals of Plastic Surgery. 53: 301-2. PMID 15480028 DOI: 10.1097/01.sap.0000136303.75925.19  0.049
2011 Tumerdem-Ulug B, Kuran I, Ozden BC, Mete O, Kemikler G, Aktas S, Calik B. Does hyperbaric oxygen administration before or after irradiation decrease side effects of irradiation on implant sites? Annals of Plastic Surgery. 67: 62-7. PMID 21301311 DOI: 10.1097/SAP.0b013e3181e6cfa4  0.042
2011 Tumerdem-Ulug B, Kuran I, Ozden BC, Mete O, Kemikler G, Aktas S, Calik B. Does hyperbaric oxygen administration before or after irradiation decrease side effects of irradiation on implant sites? Annals of Plastic Surgery. 67: 62-7. PMID 21301311 DOI: 10.1097/SAP.0b013e3181e6cfa4  0.042
2005 Aydin A, Ozden BC, Mersa B. Complications of microsurgical reconstruction of obstetrical brachial plexus palsy. Plastic and Reconstructive Surgery. 115: 353-4; author reply . PMID 15622296  0.042
2005 Aydin A, Ozden BC, Mersa B. Complications of microsurgical reconstruction of obstetrical brachial plexus palsy. Plastic and Reconstructive Surgery. 115: 353-4; author reply . PMID 15622296  0.042
2010 Guven E, Ozden BC, Basaran K, Keklik B. Delayed deepithelization of the chestwall skin: A cautious approach in perforator flap breast reconstruction Microsurgery. 30: 589-590. PMID 20734434 DOI: 10.1002/micr.20802  0.041
2004 Aydin A, Ozden BC, Erer M. Functional reconstruction of the thumb after resection of a slowly growing chondrosarcoma. Plastic and Reconstructive Surgery. 114: 1683-4. PMID 15510000  0.04
2004 Aydin A, Ozden BC, Erer M. Functional reconstruction of the thumb after resection of a slowly growing chondrosarcoma. Plastic and Reconstructive Surgery. 114: 1683-4. PMID 15510000  0.04
2014 Tukenmez M, Ozden BC, Agcaoglu O, Kecer M, Ozmen V, Muslumanoglu M, Igci A. Videoendoscopic single-port nipple-sparing mastectomy and immediate reconstruction. Journal of Laparoendoscopic & Advanced Surgical Techniques. Part A. 24: 77-82. PMID 24401140 DOI: 10.1089/lap.2013.0172  0.036
2004 Aydin A, Ozden BC, Karamürsel S, Solakoğlu S, Aktaş S, Erer M. Effect of hyperbaric oxygen therapy on nerve regeneration in early diabetes. Microsurgery. 24: 255-61. PMID 15160386 DOI: 10.1002/micr.20038  0.025
2004 Aydin A, Ozden BC, Karamürsel S, Solakoğlu S, Aktaş S, Erer M. Effect of hyperbaric oxygen therapy on nerve regeneration in early diabetes. Microsurgery. 24: 255-61. PMID 15160386 DOI: 10.1002/micr.20038  0.025
2006 Koldas T, Ozden BC. The all-purpose towel clamp: old toy, new tasks! Plastic and Reconstructive Surgery. 117: 1042-3; author reply. PMID 16525311 DOI: 10.1097/01.prs.0000201206.47049.ae  0.023
2006 Koldas T, Ozden BC. The all-purpose towel clamp: old toy, new tasks! Plastic and Reconstructive Surgery. 117: 1042-3; author reply. PMID 16525311 DOI: 10.1097/01.prs.0000201206.47049.ae  0.023
2022 Baş D, Arıbal ME, Vardareli E, Sönmez Ö, Oyan B, Özden BÇ, Sonkaya A. Validation of bioelectrical impedance analysis in the evaluation of body composition in patients with breast cancer. Nutrition in Clinical Practice : Official Publication of the American Society For Parenteral and Enteral Nutrition. PMID 36579726 DOI: 10.1002/ncp.10947  0.02
2004 Koldaş T, Onel D, Ozden BC. The use of a towel clamp as a complementary instrument for manual fat harvest. Annals of Plastic Surgery. 52: 626-7. PMID 15167004 DOI: 10.1097/01.sap.0000128086.29154.20  0.013
2004 Koldaş T, Onel D, Ozden BC. The use of a towel clamp as a complementary instrument for manual fat harvest. Annals of Plastic Surgery. 52: 626-7. PMID 15167004 DOI: 10.1097/01.sap.0000128086.29154.20  0.013
2006 Arinci A, Ozden BC. Puppeteering the umbilicus. Plastic and Reconstructive Surgery. 117: 1643-4. PMID 16641740 DOI: 10.1097/01.prs.0000208858.83639.a5  0.01
2006 Arinci A, Ozden BC. Puppeteering the umbilicus. Plastic and Reconstructive Surgery. 117: 1643-4. PMID 16641740 DOI: 10.1097/01.prs.0000208858.83639.a5  0.01
2006 Cizmeci O, Ozden BC. Abdominoplasty in a liver transplant patient. Plastic and Reconstructive Surgery. 117: 1069-70. PMID 16525338 DOI: 10.1097/01.prs.0000201321.59353.a4  0.01
2006 Cizmeci O, Ozden BC. Abdominoplasty in a liver transplant patient. Plastic and Reconstructive Surgery. 117: 1069-70. PMID 16525338 DOI: 10.1097/01.prs.0000201321.59353.a4  0.01
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