Susan Holmes

Statistics, BioX

Daniel J. Ford	grad student	2006	Stanford
Elizabeth Purdom	grad student	2006	Stanford

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Holmes S. (2019) Successful strategies for human microbiome data generation, storage and analyses. Journal of Biosciences. 44
McMurdie PJ, Holmes S. (2013) phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. Plos One. 8: e61217
Nacu S, Critchley-Thorne R, Lee P, et al. (2007) Gene expression network analysis and applications to immunology. Bioinformatics (Oxford, England). 23: 850-8
Purdom E, Holmes SP. (2005) Error distribution for gene expression data. Statistical Applications in Genetics and Molecular Biology. 4: Article16
Holmes S, He M, Xu T, et al. (2005) Memory T cells have gene expression patterns intermediate between naive and effector. Proceedings of the National Academy of Sciences of the United States of America. 102: 5519-23
Xu T, Shu CT, Purdom E, et al. (2004) Microarray analysis reveals differences in gene expression of circulating CD8(+) T cells in melanoma patients and healthy donors. Cancer Research. 64: 3661-7