Simon Tavare
Affiliations: | Applied Mathematics: Doctor of Philosophy | University of Southern California, Los Angeles, CA, United States |
Area:
Mathematics, Molecular Biology, OncologyWebsite:
https://dornsife.usc.edu/cf/faculty-and-staff/faculty.cfm?pid=1003753Google:
"Simon Tavare"Bio:
https://www.compbio.group.cam.ac.uk/directory/Simon.Tavare@cruk.cam.ac.uk
https://www.genealogy.math.ndsu.nodak.edu/id.php?id=52038
Children
Sign in to add trainee| Reza Alaghband | grad student | USC | |
| Daniel Bryan Goodman | grad student | European Bioinformatics Institute and CRUK CI (Chemistry Tree) | |
| Aleksandr B. Sahakyan | grad student | (Chemistry Tree) | |
| Lada Markovtsova | grad student | 2000 | USC |
| Oliver A. Will | grad student | 2001 | USC |
| Diana Abdueva | grad student | 2006 | USC |
| Rong Jiang | grad student | 2006 | USC |
| Vincent Plagnol | grad student | 2006 | USC |
| Ori Sargsyan | grad student | 2006 | USC |
| Dmitriy Skvortsov | grad student | 2006 | USC |
| Weihong Xu | grad student | 2006 | USC |
| Christina Curtis | grad student | 2007 | USC |
| Dhruv Grover | grad student | 2009 | USC |
| Simon R. Knott | grad student | 2011 | USC |
| Reza Ardekani | grad student | 2013 | USC |
| Tittu T. Nellimoottil | grad student | 2013 | USC |
| Tandy Jo Warnow | post-doc | 1991-1992 | USC (Computer Science Tree) |
| Peter L Chang | post-doc | 2013-2013 | (FlyTree) |
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Publications
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| Jammula S, Katz-Summercorn AC, Li X, et al. (2020) Identification of Subtypes of Barrett's Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data. Gastroenterology |
| Dinh KN, Jaksik R, Kimmel M, et al. (2020) Statistical Inference for the Evolutionary History of Cancer Genomes Statistical Science. 35: 129-144 |
| Frankell AM, Jammula S, Li X, et al. (2019) The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic. Nature Genetics |
| Touloumis A, Marioni JC, Tavaré S. (2016) HDTD: analyzing multi-tissue gene expression data. Bioinformatics (Oxford, England) |
| Curtis C, Landis GN, Folk D, et al. (2016) Erratum to: Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes. Genome Biology. 17: 93 |
| Greenwood AK, Ardekani R, McCann SR, et al. (2015) Genetic mapping of natural variation in schooling tendency in the threespine stickleback. G3 (Bethesda, Md.). 5: 761-9 |
| Paterson A, Weaver J, Eldridge M, et al. (2015) PWE-171 Mobile element insertions are frequent and potentially mutagenic events in oesophageal carcinogenesis Gut. 64: A287.2-A287 |
| Cairns J, Lynch AG, Tavaré S. (2014) Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data. Frontiers in Genetics. 5: 399 |
| Ostrow AZ, Nellimoottil T, Knott SR, et al. (2014) Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. Plos One. 9: e87647 |
| Turro E, Astle WJ, Tavaré S. (2014) Flexible analysis of RNA-seq data using mixed effects models. Bioinformatics (Oxford, England). 30: 180-8 |