Craig J. Benham

Affiliations: 
Applied Mathematics University of California, Davis, Davis, CA 
Area:
Bioinformatics Biology, General Biophysics
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"Craig Benham"
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Publications

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Zhabinskaya D, Madden S, Benham CJ. (2015) SIST: stress-induced structural transitions in superhelical DNA. Bioinformatics (Oxford, England). 31: 421-2
Du X, Gertz EM, Wojtowicz D, et al. (2014) Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation. Nucleic Acids Research. 42: 12367-79
Turan S, Qiao J, Madden S, et al. (2014) Expanding Flp-RMCE options: the potential of Recombinase Mediated Twin-Site Targeting (RMTT). Gene. 546: 135-44
Zhabinskaya D, Benham CJ. (2013) Competitive superhelical transitions involving cruciform extrusion. Nucleic Acids Research. 41: 9610-21
Du X, Wojtowicz D, Bowers AA, et al. (2013) The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli. Nucleic Acids Research. 41: 5965-77
Zhabinskaya D, Benham CJ. (2012) Theoretical analysis of competing conformational transitions in superhelical DNA. Plos Computational Biology. 8: e1002484
Sershen CL, Mell JC, Madden SM, et al. (2011) Superhelical duplex destabilization and the recombination position effect. Plos One. 6: e20798
Levens D, Benham CJ. (2011) DNA stress and strain, in silico, in vitro and in vivo. Physical Biology. 8: 035011
Zhabinskaya D, Benham CJ. (2011) Theoretical analysis of the stress induced B-Z transition in superhelical DNA. Plos Computational Biology. 7: e1001051
Strawbridge EM, Benson G, Gelfand Y, et al. (2010) The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome. Current Genetics. 56: 321-40
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