Sushmita Roy, Ph.D.

2009 Computer Science University of New Mexico, Albuquerque, NM, United States 
Computer Science, Bioinformatics Biology
"Sushmita Roy"


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Margaret Werner-Washburne grad student 2009 Univ. of New Mexico
 (Learning condition-specific networks.)
Manolis Kellis post-doc MIT (Computational Biology Tree)
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Fotuhi Siahpirani A, Ay F, Roy S. (2016) A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions. Genome Biology. 17: 114
Khatri R, Krishnan S, Roy S, et al. (2016) Reactive oxygen species limit the ability of bone marrow stromal cells to support hematopoietic reconstitution in aging mice. Stem Cells and Development
Chasman D, Fotuhi Siahpirani A, Roy S. (2016) Network-based approaches for analysis of complex biological systems. Current Opinion in Biotechnology. 39: 157-166
Niu Z, Chasman D, Eisfeld AJ, et al. (2016) Multi-task Consensus Clustering of Genome-wide Transcriptomes from Related Biological Conditions. Bioinformatics (Oxford, England)
Knaack SA, Thompson DA, Roy S. (2016) Reconstruction and Analysis of the Evolution of Modular Transcriptional Regulatory Programs Using Arboretum. Methods in Molecular Biology (Clifton, N.J.). 1361: 375-89
Roy S, Thompson D. (2015) Evolution of regulatory networks in Candida glabrata: learning to live with the human host. Fems Yeast Research
Thompson D, Regev A, Roy S. (2015) Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution. Annual Review of Cell and Developmental Biology
Dittenhafer-Reed KE, Richards AL, Fan J, et al. (2015) SIRT3 mediates multi-tissue coupling for metabolic fuel switching. Cell Metabolism. 21: 637-46
Tran KA, Jackson SA, Olufs ZP, et al. (2015) Collaborative rewiring of the pluripotency network by chromatin and signalling modulating pathways. Nature Communications. 6: 6188
Plis SM, Sui J, Lane T, et al. (2014) High-order interactions observed in multi-task intrinsic networks are dominant indicators of aberrant brain function in schizophrenia. Neuroimage. 102: 35-48
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