Ruriko Yoshida, Ph.D.
Affiliations: | 2004 | University of California, Davis, Davis, CA |
Area:
Mathematics, Statistics, Operations ResearchGoogle:
"Ruriko Yoshida"Parents
Sign in to add mentor| Jesus D. Loera | grad student | 2004 | UC Davis | |
| (Barvinok's rational functions: Algorithms and applications to optimization, statistics, and algebra.) | ||||
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Publications
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| Page R, Yoshida R, Zhang L. (2020) Tropical principal component analysis on the space of phylogenetic trees. Bioinformatics (Oxford, England) |
| Yasui N, Vogiatzis C, Yoshida R, et al. (2018) imPhy: Imputing Phylogenetic Trees with Missing Information using Mathematical Programming. Ieee/Acm Transactions On Computational Biology and Bioinformatics |
| Kang Q, Schardl CW, Moore N, et al. (2018) CURatio: Genome-wide phylogenomic analysis method using ratios of total branch lengths. Ieee/Acm Transactions On Computational Biology and Bioinformatics |
| Yoshida R, Zhang L, Zhang X. (2018) Tropical Principal Component Analysis and Its Application to Phylogenetics. Bulletin of Mathematical Biology |
| Nye TMW, Tang X, Weyenberg G, et al. (2017) Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees. Biometrika. 104: 901-922 |
| Lin B, Sturmfels B, Tang X, et al. (2017) Convexity in Tree Spaces Siam Journal On Discrete Mathematics. 31: 2015-2038 |
| Yoshida R, Fukumizu K, Vogiatzis C. (2017) Multilocus phylogenetic analysis with gene tree clustering Annals of Operations Research. 276: 293-313 |
| Kahle D, Yoshida R, Garcia-Puente L. (2017) Hybrid schemes for exact conditional inference in discrete exponential families Annals of the Institute of Statistical Mathematics. 70: 983-1011 |
| Weyenberg G, Yoshida R, Howe D. (2016) Normalizing kernels in the Billera-Holmes-Vogtmann treespace. Ieee/Acm Transactions On Computational Biology and Bioinformatics |
| Yoshida R, Nei M. (2016) Efficiencies of the NJp, maximum likelihood, and Bayesian methods of phylogenetic construction for compositional and non-compositional genes. Molecular Biology and Evolution |