Ziv Bar-Joseph

Carnegie Mellon University, Pittsburgh, PA 
Computer Science, Bioinformatics Biology, Statistics
"Ziv Bar-Joseph"


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David K. Gifford grad student Stanford
Tommi S. Jaakkola grad student MIT (Neurotree)


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Qi Song grad student 2020- Carnegie Mellon (Neurotree)
Jason Ernst grad student 2008 Carnegie Mellon (Computer Science Tree)
Yanjun Qi grad student 2008 Carnegie Mellon
Anthony Gitter grad student 2012 Carnegie Mellon
Hai-Son P. Le grad student 2013 Carnegie Mellon
Saket Navlakha post-doc Carnegie Mellon (Neurotree)
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Song Q, Wang J, Bar-Joseph Z. (2022) scSTEM: clustering pseudotime ordered single-cell data. Genome Biology. 23: 150
Yuan Y, Bar-Joseph Z. (2021) Deep learning of gene relationships from single cell time-course expression data. Briefings in Bioinformatics
Ruiz-Perez D, Lugo-Martinez J, Bourguignon N, et al. (2021) Dynamic Bayesian Networks for Integrating Multi-omics Time Series Microbiome Data. Msystems. 6
Yuan Y, Bar-Joseph Z. (2020) GCNG: graph convolutional networks for inferring gene interaction from spatial transcriptomics data. Genome Biology. 21: 300
Li D, Ding J, Bar-Joseph Z. (2020) Identifying signaling genes in spatial single cell expression data. Bioinformatics (Oxford, England)
Zafar H, Lin C, Bar-Joseph Z. (2020) Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic data. Nature Communications. 11: 3055
Zander M, Lewsey MG, Clark NM, et al. (2020) Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. 6: 290-302
Lin C, Ding J, Bar-Joseph Z. (2020) Inferring TF activation order in time series scRNA-Seq studies. Plos Computational Biology. 16: e1007644
Ding J, Bar-Joseph Z. (2020) Analysis of time-series regulatory networks Current Opinion in Systems Biology. 21: 16-24
Yuan Y, Bar-Joseph Z. (2019) Deep learning for inferring gene relationships from single-cell expression data. Proceedings of the National Academy of Sciences of the United States of America
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