Dan Knights, Ph.D.
Affiliations: | 2012 | Computer Science | University of Colorado, Boulder, Boulder, CO, United States |
Area:
Computer Science, Bioinformatics BiologyGoogle:
"Dan Knights"Parents
Sign in to add mentor| Michael C. Mozer | grad student | 2012 | CU Boulder | |
| (Predictive Modeling of Metagenomes.) | ||||
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Publications
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| Nguyen NK, Deehan EC, Zhang Z, et al. (2020) Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate. Microbiome. 8: 118 |
| Johnson AJ, Zheng JJ, Kang JW, et al. (2020) A Guide to Diet-Microbiome Study Design. Frontiers in Nutrition. 7: 79 |
| Zhu Q, Mai U, Pfeiffer W, et al. (2019) Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nature Communications. 10: 5477 |
| Le Bastard Q, Vangay P, Batard E, et al. (2019) US immigration is associated with rapid and persistent acquisition of antibiotic resistance genes in the gut. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America |
| Ward TL, Weber BP, Mendoza KM, et al. (2019) Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression. Mbio. 10 |
| Rashidi A, Ebadi M, Shields-Cutler RR, et al. (2019) Early E. casseliflavus gut colonization and outcomes of allogeneic hematopoietic cell transplantation. Plos One. 14: e0220850 |
| Johnson AJ, Vangay P, Al-Ghalith GA, et al. (2019) Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans. Cell Host & Microbe. 25: 789-802.e5 |
| Saffouri GB, Shields-Cutler RR, Chen J, et al. (2019) Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders. Nature Communications. 10: 2012 |
| Clayton JB, Shields-Cutler RR, Hoops SL, et al. (2019) Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus). American Journal of Primatology. e22977 |
| Cabana F, Clayton JB, Nekaris KAI, et al. (2019) Nutrient-based diet modifications impact on the gut microbiome of the Javan slow loris (Nycticebus javanicus). Scientific Reports. 9: 4078 |