Filip Jagodzinski, Ph.D.
Affiliations: | 2012 | Computer Science | University of Massachusetts, Amherst, Amherst, MA |
Area:
Computer Science, Bioinformatics BiologyGoogle:
"Filip Jagodzinski"Parents
Sign in to add mentor| Ileana Streinu | grad student | 2012 | U Mass Amherst | |
| (Towards large-scale validation of protein flexibility using rigidity analysis.) | ||||
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Publications
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| Jilani M, Turcan A, Haspel N, et al. (2022) Elucidating the Structural Impacts of Protein InDels. Biomolecules. 12 |
| Herr S, Myers-Dean J, Read H, et al. (2020) PETRA: Drug Engineering via Rigidity Analysis. Molecules (Basel, Switzerland). 25 |
| Valgardson J, Cosbey R, Houser P, et al. (2019) MotifAnalyzer-PDZ: A computational program to investigate the evolution of PDZ-binding target specificity. Protein Science : a Publication of the Protein Society |
| Olney R, Tuor A, Jagodzinski F, et al. (2018) A systematic exploration of [Formula: see text] cutoff ranges in machine learning models for protein mutation stability prediction. Journal of Bioinformatics and Computational Biology. 16: 1840022 |
| Mason S, Chen BY, Jagodzinski F. (2018) Exploring Protein Cavities through Rigidity Analysis. Molecules (Basel, Switzerland). 23 |
| Dehghanpoor R, Ricks E, Hursh K, et al. (2018) Predicting the Effect of Single and Multiple Mutations on Protein Structural Stability. Molecules (Basel, Switzerland). 23 |
| Siderius M, Jagodzinski F. (2017) Mutation Sensitivity Maps: Identifying Residue Substitutions That Impact Protein Structure Via a Rigidity Analysis In Silico Mutation Approach. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Haspel N, Jagodzinski F. (2017) Methods for Detecting Critical Residues in Proteins. Methods in Molecular Biology (Clifton, N.J.). 1498: 227-242 |
| Akbal-Delibas B, Jagodzinski F, Haspel N. (2013) A conservation and rigidity based method for detecting critical protein residues. Bmc Structural Biology. 13: S6 |
| Jagodzinski F, Clark P, Grant J, et al. (2013) Rigidity analysis of protein biological assemblies and periodic crystal structures. Bmc Bioinformatics. 14: S2 |