Ahmet Ay, Ph.D.

2009 Michigan State University, East Lansing, MI 
Applied Mathematics, Molecular Biology, Bioinformatics Biology
"Ahmet Ay"


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ChiChia Chiu grad student 2009 Michigan State
 (Deciphering cis-regulatory transcriptional grammar in Drosophila melanogaster by mathematical models.)
David Arnosti grad student 2006-2010 Colgate University (FlyTree)
 (computational biologist)
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Zinani OQH, Keseroğlu K, Dey S, et al. (2022) Gene copy number and negative feedback differentially regulate transcriptional variability of segmentation clock genes. Iscience. 25: 104579
Zinani OQH, Keseroğlu K, Ay A, et al. (2020) Pairing of segmentation clock genes drives robust pattern formation. Nature
Ren Y, Ay A, Dobra A, et al. (2019) Characterizing building blocks of resource constrained biological networks. Bmc Bioinformatics. 20: 318
Keskin S, Simsek MF, Vu HT, et al. (2019) Regulatory Network of the Scoliosis-Associated Genes Establishes Rostrocaudal Patterning of Somites in Zebrafish. Iscience. 12: 247-259
Ren Y, Ay A, Gerke TA, et al. (2018) Identification of jointly correlated gene sets. Journal of Bioinformatics and Computational Biology. 16: 1840019
Keskin S, Devakanmalai GS, Kwon SB, et al. (2018) Noise in the Vertebrate Segmentation Clock Is Boosted by Time Delays but Tamed by Notch Signaling. Cell Reports. 23: 2175-2185.e4
Liberman AR, Halitjaha L, Ay A, et al. (2018) Modeling Strengthens Molecular Link between Circadian Polymorphisms and Major Mood Disorders. Journal of Biological Rhythms. 748730418764540
Yildirim N, Aktas ME, Ozcan SN, et al. (2016) Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach. In Silico Biology
Ren Y, Wang Q, Hasan MM, et al. (2016) Identifying the topology of signaling networks from partial RNAi data. Bmc Systems Biology. 10: 53
Belanger KD, Larson N, Kahn J, et al. (2016) Mutant Screen Report: Microarray Analysis of Gene Expression in S. cerevisiae kap108Δ Mutants Upon Addition of Oxidative Stress. G3 (Bethesda, Md.)
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