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William E. Allen - Publications

Affiliations: 
2013- Bioengineering Stanford University, Palo Alto, CA 
Area:
neural circuits, behavior, imaging, genetics
Website:
http://www.stanford.edu/~wallen
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Richman EB, Ticea N, Allen WE, Deisseroth K, Luo L. Neural landscape diffusion resolves conflicts between needs across time. Nature. PMID 37938783 DOI: 10.1038/s41586-023-06715-z  0.767
2023 Joung J, Ma S, Tay T, Geiger-Schuller KR, Kirchgatterer PC, Verdine VK, Guo B, Arias-Garcia MA, Allen WE, Singh A, Kuksenko O, Abudayyeh OO, Gootenberg JS, Fu Z, Macrae RK, et al. A transcription factor atlas of directed differentiation. Cell. 186: 209-229.e26. PMID 36608654 DOI: 10.1016/j.cell.2022.11.026  0.319
2022 Sylwestrak EL, Jo Y, Vesuna S, Wang X, Holcomb B, Tien RH, Kim DK, Fenno L, Ramakrishnan C, Allen WE, Chen R, Shenoy KV, Sussillo D, Deisseroth K. Cell-type-specific population dynamics of diverse reward computations. Cell. 185: 3568-3587.e27. PMID 36113428 DOI: 10.1016/j.cell.2022.08.019  0.734
2020 Lui JH, Nguyen ND, Grutzner SM, Darmanis S, Peixoto D, Wagner MJ, Allen WE, Kebschull JM, Richman EB, Ren J, Newsome WT, Quake SR, Luo L. Differential encoding in prefrontal cortex projection neuron classes across cognitive tasks. Cell. PMID 33338423 DOI: 10.1016/j.cell.2020.11.046  0.744
2020 Kebschull JM, Richman EB, Ringach N, Friedmann D, Albarran E, Kolluru SS, Jones RC, Allen WE, Wang Y, Cho SW, Zhou H, Ding JB, Chang HY, Deisseroth K, Quake SR, et al. Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set. Science (New York, N.Y.). 370. PMID 33335034 DOI: 10.1126/science.abd5059  0.761
2020 Allen WE, Altae-Tran H, Briggs J, Jin X, McGee G, Shi A, Raghavan R, Kamariza M, Nova N, Pereta A, Danford C, Kamel A, Gothe P, Milam E, Aurambault J, et al. Population-scale longitudinal mapping of COVID-19 symptoms, behaviour and testing. Nature Human Behaviour. PMID 32848231 DOI: 10.1038/S41562-020-00944-2  0.32
2020 Kauvar IV, Machado TA, Yuen E, Kochalka J, Choi M, Allen WE, Wetzstein G, Deisseroth K. Cortical Observation by Synchronous Multifocal Optical Sampling Reveals Widespread Population Encoding of Actions. Neuron. PMID 32433908 DOI: 10.1016/J.Neuron.2020.04.023  0.77
2019 Allen WE, Chen MZ, Pichamoorthy N, Tien RH, Pachitariu M, Luo L, Deisseroth K. Thirst regulates motivated behavior through modulation of brainwide neural population dynamics. Science (New York, N.Y.). PMID 30948440 DOI: 10.1126/Science.Aav3932  0.738
2019 DeNardo LA, Liu CD, Allen WE, Adams EL, Friedmann D, Fu L, Guenthner CJ, Tessier-Lavigne M, Luo L. Temporal evolution of cortical ensembles promoting remote memory retrieval. Nature Neuroscience. PMID 30692687 DOI: 10.1038/S41593-018-0318-7  0.768
2018 Zhu Y, Nachtrab G, Keyes PC, Allen WE, Luo L, Chen X. Dynamic salience processing in paraventricular thalamus gates associative learning. Science (New York, N.Y.). 362: 423-429. PMID 30361366 DOI: 10.1126/Science.Aat0481  0.645
2018 Huang WH, Wang DC, Allen WE, Klope M, Hu H, Shamloo M, Luo L. Early adolescent Rai1 reactivation reverses transcriptional and social interaction deficits in a mouse model of Smith-Magenis syndrome. Proceedings of the National Academy of Sciences of the United States of America. PMID 30275311 DOI: 10.1073/Pnas.1806796115  0.734
2018 Kato HE, Kim YS, Paggi JM, Evans KE, Allen WE, Richardson C, Inoue K, Ito S, Ramakrishnan C, Fenno LE, Yamashita K, Hilger D, Lee SY, Berndt A, Shen K, et al. Structural mechanisms of selectivity and gating in anion channelrhodopsins. Nature. PMID 30158697 DOI: 10.1038/S41586-018-0504-5  0.731
2018 Wang X, Allen WE, Wright MA, Sylwestrak EL, Samusik N, Vesuna S, Evans K, Liu C, Ramakrishnan C, Liu J, Nolan GP, Bava FA, Deisseroth K. Three-dimensional intact-tissue sequencing of single-cell transcriptional states. Science (New York, N.Y.). PMID 29930089 DOI: 10.1126/Science.Aat5691  0.754
2017 Lovett-Barron M, Andalman AS, Allen WE, Vesuna S, Kauvar I, Burns VM, Deisseroth K. Ancestral Circuits for the Coordinated Modulation of Brain State. Cell. PMID 29103613 DOI: 10.1016/J.Cell.2017.10.021  0.761
2017 Allen WE, DeNardo LA, Chen MZ, Liu CD, Loh KM, Fenno LE, Ramakrishnan C, Deisseroth K, Luo L. Thirst-associated preoptic neurons encode an aversive motivational drive. Science (New York, N.Y.). 357: 1149-1155. PMID 28912243 DOI: 10.1126/Science.Aan6747  0.776
2017 Allen WE, Kauvar IV, Chen MZ, Richman EB, Yang SJ, Chan K, Gradinaru V, Deverman BE, Luo L, Deisseroth K. Global Representations of Goal-Directed Behavior in Distinct Cell Types of Mouse Neocortex. Neuron. 94: 891-907.e6. PMID 28521139 DOI: 10.1016/J.Neuron.2017.04.017  0.769
2016 Ye L, Allen WE, Thompson KR, Tian Q, Hsueh B, Ramakrishnan C, Wang AC, Jennings JH, Adhikari A, Halpern CH, Witten IB, Barth AL, Luo L, McNab JA, Deisseroth K. Wiring and Molecular Features of Prefrontal Ensembles Representing Distinct Experiences. Cell. PMID 27238022 DOI: 10.1016/J.Cell.2016.05.010  0.8
2015 Yang SJ, Allen WE, Kauvar I, Andalman AS, Young NP, Kim CK, Marshel JH, Wetzstein G, Deisseroth K. Extended field-of-view and increased-signal 3D holographic illumination with time-division multiplexing. Optics Express. 23: 32573-81. PMID 26699047 DOI: 10.1364/Oe.23.032573  0.747
2015 Allen WE, Luo L. Intersectional illumination of neural circuit function. Neuron. 85: 889-92. PMID 25741716 DOI: 10.1016/J.Neuron.2015.02.032  0.65
2015 Yang SJ, Allen WE, Kauvar I, Andalman AS, Young NP, Kim CK, Marshel JH, Wetzstein G, Deisseroth K. Extended field-of-view and increased-signal 3D holographic illumination with time-division multiplexing Optics Express. 23: 32573-32581. DOI: 10.1364/OE.23.032573  0.735
2014 Markenscoff-Papadimitriou E, Allen WE, Colquitt BM, Goh T, Murphy KK, Monahan K, Mosley CP, Ahituv N, Lomvardas S. Enhancer interaction networks as a means for singular olfactory receptor expression. Cell. 159: 543-57. PMID 25417106 DOI: 10.1016/J.Cell.2014.09.033  0.654
2013 Colquitt BM, Allen WE, Barnea G, Lomvardas S. Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity. Proceedings of the National Academy of Sciences of the United States of America. 110: 14682-7. PMID 23969834 DOI: 10.1073/Pnas.1302759110  0.777
2013 Lyons DB, Allen WE, Goh T, Tsai L, Barnea G, Lomvardas S. An epigenetic trap stabilizes singular olfactory receptor expression. Cell. 154: 325-36. PMID 23870122 DOI: 10.1016/J.Cell.2013.06.039  0.76
2011 Magklara A, Yen A, Colquitt BM, Clowney EJ, Allen W, Markenscoff-Papadimitriou E, Evans ZA, Kheradpour P, Mountoufaris G, Carey C, Barnea G, Kellis M, Lomvardas S. An epigenetic signature for monoallelic olfactory receptor expression. Cell. 145: 555-70. PMID 21529909 DOI: 10.1016/J.Cell.2011.03.040  0.766
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