Year |
Citation |
Score |
2019 |
Yang X, Zhang R, Nakahira K, Gu Z. Mitochondrial DNA Mutation, Diseases, and Nutrient-Regulated Mitophagy. Annual Review of Nutrition. 39: 201-226. PMID 31433742 DOI: 10.1146/Annurev-Nutr-082018-124643 |
0.343 |
|
2019 |
Guo X, Zhang R, Li Y, Wang Z, Ishchuk OP, Ahmad KM, Wee J, Piskur J, Shapiro JA, Gu Z. Understand the Genomic Diversity and Evolution of Fungal Pathogen Candida glabrata by Genome-wide Analysis of Genetic Variations. Methods (San Diego, Calif.). PMID 31059831 DOI: 10.1016/J.Ymeth.2019.05.002 |
0.388 |
|
2018 |
Kraja AT, Liu C, Fetterman JL, Graff M, Have CT, Gu C, Yanek LR, Feitosa MF, Arking DE, Chasman DI, Young K, Ligthart S, Hill WD, Weiss S, Luan J, ... ... Gu Z, et al. Associations of Mitochondrial and Nuclear Mitochondrial Variants and Genes with Seven Metabolic Traits. American Journal of Human Genetics. PMID 30595373 DOI: 10.1016/J.Ajhg.2018.12.001 |
0.414 |
|
2018 |
Wang Z, Sun X, Wee J, Guo X, Gu Z. Novel insights into global translational regulation through Pumilio family RNA-binding protein Puf3p revealed by ribosomal profiling. Current Genetics. PMID 29951697 DOI: 10.1007/S00294-018-0862-4 |
0.352 |
|
2017 |
Zhang R, Wang Y, Ye K, Picard M, Gu Z. Independent impacts of aging on mitochondrial DNA quantity and quality in humans. Bmc Genomics. 18: 890. PMID 29157198 DOI: 10.1186/S12864-017-4287-0 |
0.334 |
|
2017 |
Cheng J, Guo X, Cai P, Cheng X, Piskur J, Ma Y, Jiang H, Gu Z. Parallel Evolution of Chromatin Structure Underlying Metabolic Adaptation. Molecular Biology and Evolution. PMID 28961859 DOI: 10.1093/Molbev/Msx220 |
0.395 |
|
2017 |
Wang J, Zou H, Chen L, Long X, Lan J, Liu W, Ma L, Wang C, Xu X, Ren L, Gu Z, Li N, Hu X, Zhao Y, Zhao Y. Convergent and divergent genetic changes in the genome of Chinese and European pigs. Scientific Reports. 7: 8662. PMID 28819228 DOI: 10.1038/S41598-017-09061-Z |
0.369 |
|
2016 |
Hanson MR, Gu Z, Keinan A, Ye K, Germain A, Billing-Ross P. Association of mitochondrial DNA variants with myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) symptoms. Journal of Translational Medicine. 14: 342. PMID 27998272 DOI: 10.1186/S12967-016-1104-5 |
0.63 |
|
2016 |
Wang Y, Picard M, Gu Z. Genetic Evidence for Elevated Pathogenicity of Mitochondrial DNA Heteroplasmy in Autism Spectrum Disorder. Plos Genetics. 12: e1006391. PMID 27792786 DOI: 10.1371/Journal.Pgen.1006391 |
0.333 |
|
2016 |
Kothapalli KS, Ye K, Gadgil MS, Carlson SE, O'Brien KO, Zhang JY, Park HG, Ojukwu K, Zou J, Hyon SS, Joshi KS, Gu Z, Keinan A, Brenna JT. Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid. Molecular Biology and Evolution. PMID 27188529 DOI: 10.1093/Molbev/Msw049 |
0.619 |
|
2016 |
Sun X, Wang Z, Guo X, Li H, Gu Z. Coordinated Evolution of Transcriptional and Post-Transcriptional Regulation for Mitochondrial Functions in Yeast Strains. Plos One. 11: e0153523. PMID 27077367 DOI: 10.1371/Journal.Pone.0153523 |
0.412 |
|
2016 |
Billing-Ross P, Germain A, Ye K, Keinan A, Gu Z, Hanson MR. Mitochondrial DNA variants correlate with symptoms in myalgic encephalomyelitis/chronic fatigue syndrome. Journal of Translational Medicine. 14: 19. PMID 26791940 DOI: 10.1186/S12967-016-0771-6 |
0.625 |
|
2015 |
Wang Z, Sun X, Zhao Y, Guo X, Jiang H, Li H, Gu Z. Evolution of gene regulation during transcription and translation. Genome Biology and Evolution. 7: 1155-67. PMID 25877616 DOI: 10.1093/Gbe/Evv059 |
0.387 |
|
2015 |
Barker B, Xu L, Gu Z. Dynamic epistasis under varying environmental perturbations. Plos One. 10: e0114911. PMID 25625594 DOI: 10.1371/Journal.Pone.0114911 |
0.406 |
|
2015 |
Lei R, Ye K, Gu Z, Sun X. Diminishing returns in next-generation sequencing (NGS) transcriptome data. Gene. 557: 82-7. PMID 25497830 DOI: 10.1016/J.Gene.2014.12.013 |
0.364 |
|
2014 |
Jiang H, Xu L, Wang Z, Keene J, Gu Z. Coordinating expression of RNA binding proteins with their mRNA targets. Scientific Reports. 4: 7175. PMID 25417751 DOI: 10.1038/Srep07175 |
0.32 |
|
2014 |
Ye K, Lu J, Ma F, Keinan A, Gu Z. Reply to Just et al.: Mitochondrial DNA heteroplasmy could be reliably detected with massively parallel sequencing technologies. Proceedings of the National Academy of Sciences of the United States of America. 111: E4548-50. PMID 25319265 DOI: 10.1073/Pnas.1415171111 |
0.621 |
|
2014 |
Ye K, Lu J, Ma F, Keinan A, Gu Z. Extensive pathogenicity of mitochondrial heteroplasmy in healthy human individuals. Proceedings of the National Academy of Sciences of the United States of America. 111: 10654-9. PMID 25002485 DOI: 10.1073/Pnas.1403521111 |
0.648 |
|
2014 |
Ahmad KM, Kokošar J, Guo X, Gu Z, Ishchuk OP, Piškur J. Genome structure and dynamics of the yeast pathogen Candida glabrata. Fems Yeast Research. 14: 529-35. PMID 24528571 DOI: 10.1111/1567-1364.12145 |
0.369 |
|
2013 |
Ye K, Lu J, Raj SM, Gu Z. Human expression QTLs are enriched in signals of environmental adaptation. Genome Biology and Evolution. 5: 1689-701. PMID 23960253 DOI: 10.1093/Gbe/Evt124 |
0.312 |
|
2013 |
Liu X, Jiang H, Gu Z, Roberts JW. High-resolution view of bacteriophage lambda gene expression by ribosome profiling. Proceedings of the National Academy of Sciences of the United States of America. 110: 11928-33. PMID 23812753 DOI: 10.1073/Pnas.1309739110 |
0.399 |
|
2012 |
Xu L, Barker B, Gu Z. Dynamic epistasis for different alleles of the same gene. Proceedings of the National Academy of Sciences of the United States of America. 109: 10420-5. PMID 22689976 DOI: 10.1073/Pnas.1121507109 |
0.429 |
|
2012 |
Jiang H, Guo X, Xu L, Gu Z. Rewiring of posttranscriptional RNA regulons: Puf4p in fungi as an example. Molecular Biology and Evolution. 29: 2169-76. PMID 22438588 DOI: 10.1093/Molbev/Mss085 |
0.413 |
|
2011 |
Ye K, Gu Z. Recent advances in understanding the role of nutrition in human genome evolution. Advances in Nutrition (Bethesda, Md.). 2: 486-96. PMID 22332091 DOI: 10.3945/An.111.001024 |
0.349 |
|
2011 |
Xu L, Jiang H, Chen H, Gu Z. Genetic architecture of growth traits revealed by global epistatic interactions. Genome Biology and Evolution. 3: 909-14. PMID 21859803 DOI: 10.1093/Gbe/Evr065 |
0.33 |
|
2011 |
Zou Y, Huang W, Gu Z, Gu X. Predominant gain of promoter TATA box after gene duplication associated with stress responses. Molecular Biology and Evolution. 28: 2893-904. PMID 21515810 DOI: 10.1093/Molbev/Msr116 |
0.43 |
|
2011 |
Jiang H, Xu L, Gu Z. Growth of novel epistatic interactions by gene duplication. Genome Biology and Evolution. 3: 295-301. PMID 21402864 DOI: 10.1093/Gbe/Evr016 |
0.421 |
|
2010 |
Nishant KT, Wei W, Mancera E, Argueso JL, Schlattl A, Delhomme N, Ma X, Bustamante CD, Korbel JO, Gu Z, Steinmetz LM, Alani E. The baker's yeast diploid genome is remarkably stable in vegetative growth and meiosis. Plos Genetics. 6: e1001109. PMID 20838597 DOI: 10.1371/Journal.Pgen.1001109 |
0.33 |
|
2010 |
Jiang H, Guan W, Gu Z. Tinkering evolution of post-transcriptional RNA regulons: puf3p in fungi as an example. Plos Genetics. 6: e1001030. PMID 20661438 DOI: 10.1371/Journal.Pgen.1001030 |
0.411 |
|
2010 |
Zanders S, Ma X, Roychoudhury A, Hernandez RD, Demogines A, Barker B, Gu Z, Bustamante CD, Alani E. Detection of heterozygous mutations in the genome of mismatch repair defective diploid yeast using a Bayesian approach. Genetics. 186: 493-503. PMID 20660644 DOI: 10.1534/Genetics.110.120105 |
0.374 |
|
2010 |
Guan W, Jiang H, Guo X, Mancera E, Xu L, Li Y, Steinmetz L, Li Y, Gu Z. Antagonistic changes in sensitivity to antifungal drugs by mutations of an important ABC transporter gene in a fungal pathogen. Plos One. 5: e11309. PMID 20593017 DOI: 10.1371/Journal.Pone.0011309 |
0.354 |
|
2009 |
Li YD, Liang H, Gu Z, Lin Z, Guan W, Zhou L, Li YQ, Li WH. Detecting positive selection in the budding yeast genome. Journal of Evolutionary Biology. 22: 2430-7. PMID 19878412 DOI: 10.1111/J.1420-9101.2009.01851.X |
0.367 |
|
2009 |
Gu Z, Oliver S. Yeasts as models in evolutionary biology. Genome Biology. 10: 304. PMID 19291267 DOI: 10.1186/Gb-2009-10-3-304 |
0.345 |
|
2008 |
Jiang H, Zhang Y, Sun J, Wang W, Gu Z. Differential selection on gene translation efficiency between the filamentous fungus Ashbya gossypii and yeasts. Bmc Evolutionary Biology. 8: 343. PMID 19111070 DOI: 10.1186/1471-2148-8-343 |
0.417 |
|
2008 |
Chen H, Xu L, Gu Z. Regulation dynamics of WGD genes during yeast metabolic oscillation. Molecular Biology and Evolution. 25: 2513-6. PMID 18815125 DOI: 10.1093/Molbev/Msn212 |
0.438 |
|
2008 |
Jiang H, Guan W, Pinney D, Wang W, Gu Z. Relaxation of yeast mitochondrial functions after whole-genome duplication. Genome Research. 18: 1466-71. PMID 18669479 DOI: 10.1101/Gr.074674.107 |
0.402 |
|
2007 |
Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, et al. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proceedings of the National Academy of Sciences of the United States of America. 104: 12825-30. PMID 17652520 DOI: 10.1073/Pnas.0701291104 |
0.368 |
|
2007 |
Jiang H, Liu D, Gu Z, Wang W. Rapid evolution in a pair of recent duplicate segments of rice. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 50-7. PMID 16838296 DOI: 10.1002/Jez.B.21122 |
0.404 |
|
2005 |
Maltsev N, Glass EM, Ovchinnikova G, Gu Z. Molecular mechanisms involved in robustness of yeast central metabolism against null mutations. Journal of Biochemistry. 137: 177-87. PMID 15749832 DOI: 10.1093/Jb/Mvi017 |
0.354 |
|
2005 |
Gu Z, David L, Petrov D, Jones T, Davis RW, Steinmetz LM. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 1092-7. PMID 15647350 DOI: 10.1073/Pnas.0409159102 |
0.351 |
|
2005 |
Oakley TH, Gu Z, Abouheif E, Patel NH, Li WH. Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Molecular Biology and Evolution. 22: 40-50. PMID 15356281 DOI: 10.1093/Molbev/Msh257 |
0.596 |
|
2004 |
Marland E, Prachumwat A, Maltsev N, Gu Z, Li WH. Higher gene duplicabilities for metabolic proteins than for nonmetabolic proteins in yeast and E. coli. Journal of Molecular Evolution. 59: 806-14. PMID 15599512 DOI: 10.1007/S00239-004-0068-X |
0.74 |
|
2004 |
Gu Z, Rifkin SA, White KP, Li WH. Duplicate genes increase gene expression diversity within and between species. Nature Genetics. 36: 577-9. PMID 15122255 DOI: 10.1038/Ng1355 |
0.564 |
|
2003 |
Zhang P, Gu Z, Li WH. Different evolutionary patterns between young duplicate genes in the human genome. Genome Biology. 4: R56. PMID 12952535 DOI: 10.1186/Gb-2003-4-9-R56 |
0.577 |
|
2003 |
Li WH, Gu Z, Cavalcanti AR, Nekrutenko A. Detection of gene duplications and block duplications in eukaryotic genomes. Journal of Structural and Functional Genomics. 3: 27-34. PMID 12836682 DOI: 10.1023/A:1022644628861 |
0.575 |
|
2003 |
Yang J, Gu Z, Li WH. Rate of protein evolution versus fitness effect of gene deletion. Molecular Biology and Evolution. 20: 772-4. PMID 12679525 DOI: 10.1093/Molbev/Msg078 |
0.595 |
|
2003 |
Cavalcanti AR, Ferreira R, Gu Z, Li WH. Patterns of gene duplication in Saccharomyces cerevisiae and Caenorhabditis elegans. Journal of Molecular Evolution. 56: 28-37. PMID 12569420 DOI: 10.1007/S00239-002-2377-2 |
0.561 |
|
2003 |
Gu Z, Steinmetz LM, Gu X, Scharfe C, Davis RW, Li WH. Role of duplicate genes in genetic robustness against null mutations. Nature. 421: 63-6. PMID 12511954 DOI: 10.1038/Nature01198 |
0.612 |
|
2002 |
Gu Z, Nicolae D, Lu HH, Li WH. Rapid divergence in expression between duplicate genes inferred from microarray data. Trends in Genetics : Tig. 18: 609-13. PMID 12446139 DOI: 10.1016/S0168-9525(02)02837-8 |
0.562 |
|
2002 |
Gu Z, Cavalcanti A, Chen FC, Bouman P, Li WH. Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. Molecular Biology and Evolution. 19: 256-62. PMID 11861885 DOI: 10.1093/Oxfordjournals.Molbev.A004079 |
0.581 |
|
2001 |
Li WH, Gu Z, Wang H, Nekrutenko A. Evolutionary analyses of the human genome. Nature. 409: 847-9. PMID 11237007 DOI: 10.1038/35057039 |
0.565 |
|
2000 |
Gu Z, Wang H, Nekrutenko A, Li WH. Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence. Gene. 259: 81-8. PMID 11163965 DOI: 10.1016/S0378-1119(00)00434-0 |
0.512 |
|
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