Year |
Citation |
Score |
2023 |
Kuo HC, Yao CT, Liao BY, Weng MP, Dong F, Hsu YC, Hung CM. Weak gene-gene interaction facilitates the evolution of gene expression plasticity. Bmc Biology. 21: 57. PMID 36941675 DOI: 10.1186/s12915-023-01558-6 |
0.377 |
|
2023 |
Negi A, Liao BY, Yeh SD. Long-read-based Genome Assembly of Drosophila gunungcola Reveals Fewer Chemosensory Genes in Flower-breeding Species. Genome Biology and Evolution. 15. PMID 36930539 DOI: 10.1093/gbe/evad048 |
0.33 |
|
2020 |
Lu MR, Lai CK, Liao BY, Tsai IJ. Comparative transcriptomics across nematode life cycles reveal gene expression conservation and correlated evolution in adjacent developmental stages. Genome Biology and Evolution. PMID 32467980 DOI: 10.1093/Gbe/Evaa110 |
0.334 |
|
2020 |
Chiang CY, Ching YH, Chang TY, Hu LS, Yong YS, Keak PY, Mustika I, Lin MD, Liao BY. Novel eye genes systematically discovered through an integrated analysis of mouse transcriptomes and phenome. Computational and Structural Biotechnology Journal. 18: 73-82. PMID 31934309 DOI: 10.1016/J.Csbj.2019.12.009 |
0.474 |
|
2020 |
Chang AY, Liao BY. Reduced translational efficiency of eukaryotic genes after duplication events. Molecular Biology and Evolution. PMID 31904835 DOI: 10.1093/Molbev/Msz309 |
0.531 |
|
2017 |
Chang AY, Liao BY. Recruitment of histone modifications to assist mRNA dosage maintenance after degeneration of cytosine DNA methylation during animal evolution. Genome Research. PMID 28720579 DOI: 10.1101/Gr.221739.117 |
0.398 |
|
2017 |
Weng MP, Liao BY. modPhEA: model organism Phenotype Enrichment Analysis of eukaryotic gene sets. Bioinformatics (Oxford, England). PMID 28666356 DOI: 10.1093/Bioinformatics/Btx426 |
0.423 |
|
2016 |
Hsu CH, Chiang AW, Hwang MJ, Liao BY. Proteins with highly evolvable domain architectures are non-essential but highly retained. Molecular Biology and Evolution. PMID 26769031 DOI: 10.1093/Molbev/Msw006 |
0.355 |
|
2016 |
Liao BY, Weng MP. Functionalities of expressed messenger RNAs revealed from mutant phenotypes. Wiley Interdisciplinary Reviews. Rna. PMID 26748449 DOI: 10.1002/Wrna.1329 |
0.429 |
|
2015 |
Wang Z, Cheng K, Wan L, Yan L, Jiang H, Liu S, Lei Y, Liao B. Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes. Bmc Genomics. 16: 1053. PMID 26651343 DOI: 10.1186/s12864-015-2258-x |
0.395 |
|
2015 |
Wang H, Lei Y, Yan L, Cheng K, Dai X, Wan L, Guo W, Cheng L, Liao B. Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol. Bmc Microbiology. 15: 182. PMID 26420172 DOI: 10.1186/s12866-015-0513-6 |
0.34 |
|
2015 |
Chen S, Lei Y, Xu X, Huang J, Jiang H, Wang J, Cheng Z, Zhang J, Song Y, Liao B, Li Y. The Peanut (Arachis hypogaea L.) Gene AhLPAT2 Increases the Lipid Content of Transgenic Arabidopsis Seeds. Plos One. 10: e0136170. PMID 26302041 DOI: 10.1371/journal.pone.0136170 |
0.442 |
|
2015 |
Wu R, Wu C, Liu D, Yang X, Huang J, Zhang J, Liao B, He H, Li H. Overview of Antioxidant Peptides Derived from Marine Resources: The Sources, Characteristic, Purification, and Evaluation Methods. Applied Biochemistry and Biotechnology. PMID 26041057 DOI: 10.1007/s12010-015-1689-9 |
0.323 |
|
2015 |
Liao BY, Weng MP. Unraveling the association between mRNA expressions and mutant phenotypes in a genome-wide assessment of mice. Proceedings of the National Academy of Sciences of the United States of America. 112: 4707-12. PMID 25825715 DOI: 10.1073/Pnas.1415046112 |
0.474 |
|
2015 |
Xie LJ, Chen QF, Chen MX, Yu LJ, Huang L, Chen L, Wang FZ, Xia FN, Zhu TR, Wu JX, Yin J, Liao B, Shi J, Zhang JH, Aharoni A, et al. Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis. Plos Genetics. 11: e1005143. PMID 25822663 DOI: 10.1371/Journal.Pgen.1005143 |
0.368 |
|
2015 |
Yu J, Ke T, Tehrim S, Sun F, Liao B, Hua W. PTGBase: an integrated database to study tandem duplicated genes in plants. Database : the Journal of Biological Databases and Curation. 2015. PMID 25797062 DOI: 10.1093/database/bav017 |
0.378 |
|
2015 |
Ma N, Shan Y, Liao B, Kong G, Wang C, Huang K, Zhang H, Cai X, Chen S, Pei D, Chen N, Pan G. Factor-induced Reprogramming and Zinc Finger Nuclease-aided Gene Targeting Cause Different Genome Instability in β-Thalassemia Induced Pluripotent Stem Cells (iPSCs). The Journal of Biological Chemistry. 290: 12079-89. PMID 25795783 DOI: 10.1074/Jbc.M114.624999 |
0.313 |
|
2015 |
Zhang J, Li J, Huang Z, Yang B, Zhang X, Li D, Craik DJ, Baker AJ, Shu W, Liao B. Transcriptomic screening for cyclotides and other cysteine-rich proteins in the metallophyte Viola baoshanensis. Journal of Plant Physiology. 178: 17-26. PMID 25756919 DOI: 10.1016/J.Jplph.2015.01.017 |
0.477 |
|
2014 |
Liao BY, Chang A. Accumulation of CTCF-binding sites drives expression divergence between tandemly duplicated genes in humans. Bmc Genomics. 15: S8. PMID 24564680 DOI: 10.1186/1471-2164-15-S1-S8 |
0.497 |
|
2013 |
Chang TY, Liao BY. Flagellated algae protein evolution suggests the prevalence of lineage-specific rules governing evolutionary rates of eukaryotic proteins. Genome Biology and Evolution. 5: 913-22. PMID 23563973 DOI: 10.1093/Gbe/Evt055 |
0.43 |
|
2013 |
Chen DH, Chang AY, Liao BY, Yeang CH. Functional characterization of motif sequences under purifying selection. Nucleic Acids Research. 41: 2105-20. PMID 23303791 DOI: 10.1093/Nar/Gks1456 |
0.447 |
|
2012 |
Liao BY, Weng MP. Natural selection drives rapid evolution of mouse embryonic heart enhancers. Bmc Systems Biology. 6: S1. PMID 23281795 DOI: 10.1186/1752-0509-6-S2-S1 |
0.425 |
|
2012 |
Shiao MS, Chang AY, Liao BY, Ching YH, Lu MY, Chen SM, Li WH. Transcriptomes of mouse olfactory epithelium reveal sexual differences in odorant detection. Genome Biology and Evolution. 4: 703-12. PMID 22511034 DOI: 10.1093/Gbe/Evs039 |
0.428 |
|
2012 |
Chen FC, Liao BY, Pan CL, Lin HY, Chang AY. Assessing determinants of exonic evolutionary rates in mammals. Molecular Biology and Evolution. 29: 3121-9. PMID 22504521 DOI: 10.1093/Molbev/Mss116 |
0.363 |
|
2012 |
Yang JR, Liao BY, Zhuang SM, Zhang J. Protein misinteraction avoidance causes highly expressed proteins to evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 109: E831-40. PMID 22416125 DOI: 10.1073/pnas.1117408109 |
0.626 |
|
2012 |
Liao BY, Chang AY. Mammalian genes preferentially co-retained in radiation hybrid panels tend to avoid coexpression. Plos One. 7: e32284. PMID 22384204 DOI: 10.1371/Journal.Pone.0032284 |
0.483 |
|
2012 |
Chang AY, Liao BY. DNA methylation rebalances gene dosage after mammalian gene duplications. Molecular Biology and Evolution. 29: 133-44. PMID 21821837 DOI: 10.1093/Molbev/Msr174 |
0.487 |
|
2011 |
Weng MP, Liao BY. DroPhEA: Drosophila phenotype enrichment analysis for insect functional genomics. Bioinformatics (Oxford, England). 27: 3218-9. PMID 21976423 DOI: 10.1093/Bioinformatics/Btr530 |
0.405 |
|
2011 |
Chen CH, Liao BY, Chen FC. Exploring the selective constraint on the sizes of insertions and deletions in 5' untranslated regions in mammals. Bmc Evolutionary Biology. 11: 192. PMID 21726469 DOI: 10.1186/1471-2148-11-192 |
0.339 |
|
2010 |
Wang Z, Liao BY, Zhang J. Genomic patterns of pleiotropy and the evolution of complexity. Proceedings of the National Academy of Sciences of the United States of America. 107: 18034-9. PMID 20876104 DOI: 10.1073/pnas.1004666107 |
0.537 |
|
2010 |
Qian W, Liao BY, Chang AY, Zhang J. Maintenance of duplicate genes and their functional redundancy by reduced expression. Trends in Genetics : Tig. 26: 425-30. PMID 20708291 DOI: 10.1016/J.Tig.2010.07.002 |
0.644 |
|
2010 |
Weng MP, Liao BY. MamPhEA: a web tool for mammalian phenotype enrichment analysis. Bioinformatics (Oxford, England). 26: 2212-3. PMID 20605928 DOI: 10.1093/Bioinformatics/Btq359 |
0.389 |
|
2010 |
Liao BY, Weng MP, Zhang J. Contrasting genetic paths to morphological and physiological evolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 7353-8. PMID 20368429 DOI: 10.1073/pnas.0910339107 |
0.559 |
|
2010 |
Liao BY, Weng MP, Zhang J. Impact of extracellularity on the evolutionary rate of mammalian proteins. Genome Biology and Evolution. 2: 39-43. PMID 20333223 DOI: 10.1093/gbe/evp058 |
0.495 |
|
2009 |
Chen CH, Chuang TJ, Liao BY, Chen FC. Scanning for the signatures of positive selection for human-specific insertions and deletions. Genome Biology and Evolution. 1: 415-9. PMID 20333210 DOI: 10.1093/Gbe/Evp041 |
0.359 |
|
2008 |
Liao BY, Zhang J. Null mutations in human and mouse orthologs frequently result in different phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 105: 6987-92. PMID 18458337 DOI: 10.1073/Pnas.0800387105 |
0.623 |
|
2008 |
Liao BY, Zhang J. Coexpression of linked genes in Mammalian genomes is generally disadvantageous. Molecular Biology and Evolution. 25: 1555-65. PMID 18440951 DOI: 10.1093/Molbev/Msn101 |
0.615 |
|
2008 |
Shiao MS, Liao BY, Long M, Yu HT. Adaptive evolution of the insulin two-gene system in mouse. Genetics. 178: 1683-91. PMID 18245324 DOI: 10.1534/Genetics.108.087023 |
0.416 |
|
2007 |
Liao BY, Zhang J. Mouse duplicate genes are as essential as singletons. Trends in Genetics : Tig. 23: 378-81. PMID 17559966 DOI: 10.1016/j.tig.2007.05.006 |
0.546 |
|
2006 |
Liao BY, Scott NM, Zhang J. Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. Molecular Biology and Evolution. 23: 2072-80. PMID 16887903 DOI: 10.1093/Molbev/Msm043 |
0.609 |
|
2006 |
Liao BY, Zhang J. Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Molecular Biology and Evolution. 23: 1119-28. PMID 16520335 DOI: 10.1093/molbev/msj119 |
0.58 |
|
2006 |
Liao BY, Zhang J. Evolutionary conservation of expression profiles between human and mouse orthologous genes. Molecular Biology and Evolution. 23: 530-40. PMID 16280543 DOI: 10.1093/molbev/msj054 |
0.559 |
|
2004 |
Liao BY, Chang YJ, Ho JM, Hwang MJ. The UniMarker (UM) method for synteny mapping of large genomes. Bioinformatics (Oxford, England). 20: 3156-65. PMID 15217808 DOI: 10.1093/Bioinformatics/Bth380 |
0.312 |
|
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