| Year |
Citation |
Score |
| 2020 |
Zhang C, Dinh V, Matsen FA. Non-bifurcating phylogenetic tree inference via the adaptive LASSO Journal of the American Statistical Association. 1-16. DOI: 10.1080/01621459.2020.1778481 |
0.319 |
|
| 2019 |
Ho LST, Dinh V, Matsen FA, Suchard MA. On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model. Journal of Mathematical Biology. PMID 31754778 DOI: 10.1007/S00285-019-01453-1 |
0.323 |
|
| 2019 |
Lees W, Busse CE, Corcoran M, Ohlin M, Scheepers C, Matsen FA, Yaari G, Watson CT, Collins A, Shepherd AJ. OGRDB: a reference database of inferred immune receptor genes. Nucleic Acids Research. PMID 31566225 DOI: 10.1093/Nar/Gkz822 |
0.327 |
|
| 2019 |
Fourment M, Magee AF, Whidden C, Bilge A, Matsen FA, Minin VN. 19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology. Systematic Biology. PMID 31504998 DOI: 10.1093/Sysbio/Syz046 |
0.311 |
|
| 2019 |
Whidden C, Claywell BC, Fisher T, Magee AF, Fourment M, Matsen FA. Systematic exploration of the high likelihood set of phylogenetic tree topologies. Systematic Biology. PMID 31504997 DOI: 10.1093/Sysbio/Syz047 |
0.313 |
|
| 2019 |
Ralph DK, Matsen FA. Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data. Plos Computational Biology. 15: e1007133. PMID 31329576 DOI: 10.1371/Journal.Pcbi.1007133 |
0.332 |
|
| 2018 |
Olson BJ, Matsen FA. The Bayesian optimist's guide to adaptive immune receptor repertoire analysis. Immunological Reviews. 284: 148-166. PMID 29944760 DOI: 10.1111/Imr.12664 |
0.322 |
|
| 2018 |
DeWitt WS, Mesin L, Victora GD, Minin VN, Matsen FA. Using genotype abundance to improve phylogenetic inference. Molecular Biology and Evolution. PMID 29474671 DOI: 10.1093/Molbev/Msy020 |
0.34 |
|
| 2016 |
Ralph DK, Matsen FA. Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation. Plos Computational Biology. 12: e1004409. PMID 26751373 DOI: 10.1371/Journal.Pcbi.1004409 |
0.349 |
|
| 2015 |
Whidden C, Matsen FA. Quantifying MCMC exploration of phylogenetic tree space. Systematic Biology. 64: 472-91. PMID 25631175 DOI: 10.1093/Sysbio/Syv006 |
0.334 |
|
| 2014 |
Darling AE, Jospin G, Lowe E, Matsen FA, Bik HM, Eisen JA. PhyloSift: phylogenetic analysis of genomes and metagenomes. Peerj. 2: e243. PMID 24482762 DOI: 10.7717/Peerj.243 |
0.339 |
|
| 2013 |
Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, et al. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections. Plos One. 8: e65226. PMID 23734239 DOI: 10.1371/Journal.Pone.0065226 |
0.317 |
|
| 2012 |
Evans SN, Matsen FA. The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples. Journal of the Royal Statistical Society. Series B, Statistical Methodology. 74: 569-592. PMID 22844205 DOI: 10.1111/J.1467-9868.2011.01018.X |
0.328 |
|
| 2012 |
Matsen FA, Hoffman NG, Gallagher A, Stamatakis A. A format for phylogenetic placements. Plos One. 7: e31009. PMID 22383988 DOI: 10.1371/Journal.Pone.0031009 |
0.304 |
|
| 2010 |
Matsen FA, Kodner RB, Armbrust EV. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. Bmc Bioinformatics. 11: 538. PMID 21034504 DOI: 10.1186/1471-2105-11-538 |
0.365 |
|
| 2010 |
Matsen FA. constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraints. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 799-818. PMID 20500096 DOI: 10.1089/Cmb.2009.0201 |
0.324 |
|
| 2008 |
Matsen FA, Mossel E, Steel M. Mixed-up trees: the structure of phylogenetic mixtures. Bulletin of Mathematical Biology. 70: 1115-39. PMID 18175189 DOI: 10.1007/S11538-007-9293-Y |
0.336 |
|
| 2007 |
Matsen FA, Steel M. Phylogenetic mixtures on a single tree can mimic a tree of another topology. Systematic Biology. 56: 767-75. PMID 17886146 DOI: 10.1080/10635150701627304 |
0.331 |
|
| 2007 |
Matsen FA. Optimization over a class of tree shape statistics. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 506-12. PMID 17666770 DOI: 10.1109/Tcbb.2007.1020 |
0.327 |
|
| 2007 |
Steel M, Matsen FA. The Bayesian "star paradox" persists for long finite sequences. Molecular Biology and Evolution. 24: 1075-9. PMID 17299027 DOI: 10.1093/Molbev/Msm028 |
0.325 |
|
| 2006 |
Matsen FA. A geometric approach to tree shape statistics. Systematic Biology. 55: 652-61. PMID 16969941 DOI: 10.1080/10635150600889617 |
0.321 |
|
| 2004 |
Matsen FA, Nowak MA. Win-stay, lose-shift in language learning from peers. Proceedings of the National Academy of Sciences of the United States of America. 101: 18053-7. PMID 15604145 DOI: 10.1073/Pnas.0406608102 |
0.387 |
|
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