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Matthew Slattery, Ph.D. - Publications

Affiliations: 
2013- Biomedical Sciences University of Minnesota, Twin Cities, Minneapolis, MN 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lacher SE, Skon-Hegg C, Ruis BL, Krznarich J, Slattery M. An antioxidant response element regulates the HIF1α axis in breast cancer cells. Free Radical Biology & Medicine. 204: 243-251. PMID 37179033 DOI: 10.1016/j.freeradbiomed.2023.05.003  0.363
2022 Loganathan R, Levings DC, Kim JH, Wells MB, Chiu H, Wu Y, Slattery M, Andrew DJ. Ribbon boosts ribosomal protein gene expression to coordinate organ form and function. The Journal of Cell Biology. 221. PMID 35195669 DOI: 10.1083/jcb.202110073  0.355
2021 Levings DC, Lacher SE, Palacios-Moreno J, Slattery M. Transcriptional reprogramming by oxidative stress occurs within a predefined chromatin accessibility landscape. Free Radical Biology & Medicine. 171: 319-331. PMID 33992677 DOI: 10.1016/j.freeradbiomed.2021.05.016  0.317
2021 Quiquand M, Rimesso G, Qiao N, Suo S, Zhao C, Slattery M, White KP, Han JJ, Baker NE. New regulators of Drosophila eye development identified from temporal transcriptome changes. Genetics. PMID 33681970 DOI: 10.1093/genetics/iyab007  0.34
2020 Johnson DM, Wells MB, Fox R, Lee JS, Loganathan R, Levings D, Bastien A, Slattery M, Andrew DJ. CrebA increases secretory capacity through direct transcriptional regulation of the secretory machinery, a subset of secretory cargo, and other key regulators. Traffic (Copenhagen, Denmark). PMID 32613751 DOI: 10.1111/Tra.12753  0.45
2020 Zraly CB, Zakkar A, Perez JH, Ng J, White KP, Slattery M, Dingwall AK. The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development. Nucleic Acids Research. PMID 32052053 DOI: 10.1093/Nar/Gkaa082  0.474
2018 Newcomb S, Voutev R, Jory A, Delker RK, Slattery M, Mann RS. cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg. Plos Genetics. 14: e1007568. PMID 30142157 DOI: 10.1371/Journal.Pgen.1007568  0.683
2018 Lacher SE, Alazizi A, Wang X, Bell DA, Pique-Regi R, Luca F, Slattery M. A hypermorphic antioxidant response element is associated with increased MS4A6A expression and Alzheimer's disease. Redox Biology. 14: 686-693. PMID 29179108 DOI: 10.1016/J.Redox.2017.10.018  0.331
2018 Levings D, Wang X, Kohlhase D, Bell D, Slattery M. Genome-scale dissection of regulatory network dysfunction in tumors with high NRF2 activity Free Radical Biology and Medicine. 120. DOI: 10.1016/J.Freeradbiomed.2018.04.318  0.405
2017 Wang L, Joshi P, Miller EL, Higgins L, Slattery M, Simon JA. A Role for Mono-methylation of Histone H3-K27 in Gene Activity in Drosophila. Genetics. PMID 29242288 DOI: 10.1534/Genetics.117.300585  0.354
2017 Levings D, Wang X, Kohlhase D, Bell D, Slattery M. A Distinct Class of Antioxidant Response Elements is Consistently Activated in Tumors with Oncogenic NRF2 Mutations Free Radical Biology and Medicine. 112: 101-102. DOI: 10.1016/J.Freeradbiomed.2017.10.152  0.42
2016 Lacher SE, Slattery M. Gene regulatory effects of disease-associated variation in the NRF2 network. Current Opinion in Toxicology. 1: 71-79. PMID 28203648 DOI: 10.1016/J.Cotox.2016.09.001  0.362
2016 Wang X, Campbell MR, Lacher SE, Cho HY, Wan M, Crowl CL, Chorley BN, Bond GL, Kleeberger SR, Slattery M, Bell DA. A Polymorphic Antioxidant Response Element Links NRF2/sMAF Binding to Enhanced MAPT Expression and Reduced Risk of Parkinsonian Disorders. Cell Reports. PMID 27149848 DOI: 10.1016/J.Celrep.2016.03.068  0.36
2015 Zhang Y, Lee JK, Toso EA, Lee JS, Choi SH, Slattery M, Aihara H, Kyba M. DNA-binding sequence specificity of DUX4. Skeletal Muscle. 6: 8. PMID 26823969 DOI: 10.1186/S13395-016-0080-Z  0.385
2015 Loganathan R, Lee JS, Wells MB, Grevengoed E, Slattery M, Andrew DJ. Ribbon regulates morphogenesis of the drosophila embryonic salivary gland through transcriptional activation and repression. Developmental Biology. PMID 26477561 DOI: 10.1016/J.Ydbio.2015.10.016  0.373
2015 Bieli D, Kanca O, Requena D, Hamaratoglu F, Gohl D, Schedl P, Affolter M, Slattery M, Müller M, Estella C. Establishment of a Developmental Compartment Requires Interactions between Three Synergistic Cis-regulatory Modules. Plos Genetics. 11: e1005376. PMID 26468882 DOI: 10.1371/Journal.Pgen.1005376  0.694
2015 Lacher SE, Lee JS, Wang X, Campbell MR, Bell DA, Slattery M. Beyond antioxidant genes in the ancient NRF2 regulatory network. Free Radical Biology & Medicine. PMID 26163000 DOI: 10.1016/J.Freeradbiomed.2015.06.044  0.393
2015 Abe N, Dror I, Yang L, Slattery M, Zhou T, Bussemaker HJ, Rohs R, Mann RS. Deconvolving the recognition of DNA shape from sequence. Cell. 161: 307-18. PMID 25843630 DOI: 10.1016/J.Cell.2015.02.008  0.539
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Slattery M, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/Nature13668  0.367
2014 Riley TR, Slattery M, Abe N, Rastogi C, Liu D, Mann RS, Bussemaker HJ. SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes. Methods in Molecular Biology (Clifton, N.J.). 1196: 255-78. PMID 25151169 DOI: 10.1007/978-1-4939-1242-1_16  0.638
2014 Slattery M, Zhou T, Yang L, Dantas Machado AC, Gordân R, Rohs R. Absence of a simple code: how transcription factors read the genome. Trends in Biochemical Sciences. 39: 381-99. PMID 25129887 DOI: 10.1016/j.tibs.2014.07.002  0.438
2014 Oh H, Slattery M, Ma L, White KP, Mann RS, Irvine KD. Yorkie promotes transcription by recruiting a histone methyltransferase complex. Cell Reports. 8: 449-59. PMID 25017066 DOI: 10.1016/J.Celrep.2014.06.017  0.58
2014 Slattery M, Ma L, Spokony RF, Arthur RK, Kheradpour P, Kundaje A, Nègre N, Crofts A, Ptashkin R, Zieba J, Ostapenko A, Suchy S, Victorsen A, Jameel N, Grundstad AJ, et al. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster. Genome Research. 24: 1224-35. PMID 24985916 DOI: 10.1101/Gr.168807.113  0.535
2014 Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, Nègre N, White KP. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome Research. 24: 1115-24. PMID 24985914 DOI: 10.1101/Gr.162008.113  0.448
2013 Slattery M, Voutev R, Ma L, Nègre N, White KP, Mann RS. Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. Plos Genetics. 9: e1003753. PMID 24039600 DOI: 10.1371/Journal.Pgen.1003753  0.644
2013 Oh H, Slattery M, Ma L, Crofts A, White KP, Mann RS, Irvine KD. Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes. Cell Reports. 3: 309-18. PMID 23395637 DOI: 10.1016/J.Celrep.2013.01.008  0.636
2013 Abe N, Slattery M, Dror I, Rohs R, Honig B, Mann RS. 68 Deconvoluting the recognition of DNA shape from DNA sequence Journal of Biomolecular Structure and Dynamics. 31: 43-43. DOI: 10.1080/07391102.2013.786502  0.575
2012 Jory A, Estella C, Giorgianni MW, Slattery M, Laverty TR, Rubin GM, Mann RS. A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster. Cell Reports. 2: 1014-24. PMID 23063361 DOI: 10.1016/J.Celrep.2012.09.010  0.718
2012 Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, ... ... Slattery M, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research. 22: 1813-31. PMID 22955991 DOI: 10.1101/Gr.136184.111  0.36
2012 Lelli KM, Slattery M, Mann RS. Disentangling the many layers of eukaryotic transcriptional regulation. Annual Review of Genetics. 46: 43-68. PMID 22934649 DOI: 10.1146/Annurev-Genet-110711-155437  0.695
2012 Nagaraj R, Gururaja-Rao S, Jones KT, Slattery M, Negre N, Braas D, Christofk H, White KP, Mann R, Banerjee U. Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway. Genes & Development. 26: 2027-37. PMID 22925885 DOI: 10.1101/gad.183061.111  0.474
2012 Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, et al. Systematic evaluation of factors influencing ChIP-seq fidelity. Nature Methods. 9: 609-14. PMID 22522655 DOI: 10.1038/Nmeth.1985  0.383
2011 Slattery M, Riley T, Liu P, Abe N, Gomez-Alcala P, Dror I, Zhou T, Rohs R, Honig B, Bussemaker HJ, Mann RS. Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins. Cell. 147: 1270-82. PMID 22153072 DOI: 10.1016/J.Cell.2011.10.053  0.599
2011 Slattery M, Ma L, Négre N, White KP, Mann RS. Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila. Plos One. 6: e14686. PMID 21483663 DOI: 10.1371/Journal.Pone.0014686  0.599
2009 Peng HW, Slattery M, Mann RS. Transcription factor choice in the Hippo signaling pathway: homothorax and yorkie regulation of the microRNA bantam in the progenitor domain of the Drosophila eye imaginal disc. Genes & Development. 23: 2307-19. PMID 19762509 DOI: 10.1101/Gad.1820009  0.683
2008 Affolter M, Slattery M, Mann RS. A lexicon for homeodomain-DNA recognition. Cell. 133: 1133-5. PMID 18585344 DOI: 10.1016/J.Cell.2008.06.008  0.614
2007 Liko D, Slattery MG, Heideman W. Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 282: 26623-8. PMID 17616518 DOI: 10.1074/Jbc.M704762200  0.368
2007 Slattery MG, Heideman W. Coordinated regulation of growth genes in Saccharomyces cerevisiae. Cell Cycle (Georgetown, Tex.). 6: 1210-9. PMID 17495542 DOI: 10.4161/Cc.6.10.4257  0.332
2007 Kanin EI, Kipp RT, Kung C, Slattery M, Viale A, Hahn S, Shokat KM, Ansari AZ. Chemical inhibition of the TFIIH-associated kinase Cdk7/Kin28 does not impair global mRNA synthesis. Proceedings of the National Academy of Sciences of the United States of America. 104: 5812-7. PMID 17392431 DOI: 10.1073/Pnas.0611505104  0.391
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