| Year |
Citation |
Score |
| 2022 |
Ramola R, Friedberg I, Radivojac P. The field of protein function prediction as viewed by different domain scientists. Bioinformatics Advances. 2: vbac057. PMID 36699361 DOI: 10.1093/bioadv/vbac057 |
0.306 |
|
| 2022 |
Radivojac P. Advancing remote homology detection: A step toward understanding and accurately predicting protein function. Cell Systems. 13: 435-437. PMID 35709700 DOI: 10.1016/j.cels.2022.05.006 |
0.332 |
|
| 2020 |
Pejaver V, Urresti J, Lugo-Martinez J, Pagel KA, Lin GN, Nam HJ, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P. Inferring the molecular and phenotypic impact of amino acid variants with MutPred2. Nature Communications. 11: 5918. PMID 33219223 DOI: 10.1038/s41467-020-19669-x |
0.318 |
|
| 2020 |
Stamboulian M, Guerrero RF, Hahn MW, Radivojac P. The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction. Bioinformatics (Oxford, England). 36: i219-i226. PMID 32657391 DOI: 10.1093/Bioinformatics/Btaa468 |
0.369 |
|
| 2019 |
Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, ... ... Radivojac P, et al. The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology. 20: 244. PMID 31744546 DOI: 10.1186/S13059-019-1835-8 |
0.375 |
|
| 2019 |
Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, Ford CT, Jones D, Katsonis P, Kundu K, Lichtarge O, ... ... Radivojac P, et al. Assessment of predicted enzymatic activity of alpha-N-acetylglucosaminidase (NAGLU) variants of unknown significance for CAGI 2016. Human Mutation. PMID 31342580 DOI: 10.1002/Humu.23875 |
0.537 |
|
| 2019 |
Kasak L, Hunter JM, Udani R, Bakolitsa C, Hu Z, Adhikari AN, Babbi G, Casadio R, Gough J, Guerrero RF, Jiang Y, Joseph T, Katsonis P, Kotte S, Kundu K, ... ... Radivojac P, et al. CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases. Human Mutation. PMID 31322791 DOI: 10.1002/Humu.23874 |
0.318 |
|
| 2019 |
Kasak L, Bakolitsa C, Hu Z, Yu C, Rine J, Dimster-Denk DF, Pandey G, De Baets G, Bromberg Y, Cao C, Capriotti E, Casadio R, Van Durme J, Giollo M, Karchin R, ... ... Radivojac P, et al. Assessing Computational Predictions of the Phenotypic Effect of Cystathionine-beta-Synthase Variants. Human Mutation. PMID 31301157 DOI: 10.1002/Humu.23868 |
0.37 |
|
| 2019 |
Cline MS, Babbi G, Bonache S, Cao Y, Casadio R, de la Cruz X, Díez O, Gutiérrez-Enríquez S, Katsonis P, Lai C, Lichtarge O, Martelli PL, Mishne G, Moles-Fernández A, Montalban G, ... ... Radivojac P, et al. Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. Human Mutation. PMID 31294896 DOI: 10.1002/Humu.23861 |
0.315 |
|
| 2019 |
Voskanian A, Katsonis P, Lichtarge O, Pejaver V, Radivojac P, Mooney SD, Capriotti E, Bromberg Y, Wang Y, Miller M, Martelli PL, Savojardo C, Babbi G, Casadio R, Cao Y, et al. Assessing the performance of in-silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer. Human Mutation. PMID 31241222 DOI: 10.1002/Humu.23849 |
0.331 |
|
| 2019 |
Pagel KA, Antaki D, Lian A, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P. Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. Plos Computational Biology. 15: e1007112. PMID 31199787 DOI: 10.1371/Journal.Pcbi.1007112 |
0.407 |
|
| 2019 |
Pejaver V, Babbi G, Casadio R, Folkman L, Katsonis P, Kundu K, Lichtarge O, Martelli PL, Miller M, Moult J, Pal LR, Savojardo C, Yin Y, Zhou Y, Radivojac P, et al. Assessment of methods for predicting the effects of PTEN and TPMT protein variants. Human Mutation. PMID 31184403 DOI: 10.1002/Humu.23838 |
0.377 |
|
| 2019 |
Carraro M, Monzon AM, Chiricosta L, Reggiani F, Aspromonte MC, Bellini M, Pagel K, Jiang Y, Radivojac P, Kundu K, Pal LR, Yin Y, Limongelli I, Andreoletti G, Moult J, et al. Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge. Human Mutation. PMID 31144778 DOI: 10.1002/Humu.23823 |
0.393 |
|
| 2019 |
McInnes G, Daneshjou R, Katsonis P, Lichtarge O, Srinivasan RG, Rana S, Radivojac P, Mooney SD, Pagel KA, Stamboulian M, Jiang Y, Capriotti E, Wang Y, Bromberg Y, Bovo S, et al. Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges. Human Mutation. PMID 31140652 DOI: 10.1002/Humu.23825 |
0.328 |
|
| 2019 |
Misal SA, Li S, Tang H, Radivojac P, Reilly JP. Identification of N-terminal protein processing sites by chemical labeling mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. PMID 30884002 DOI: 10.1002/Rcm.8435 |
0.318 |
|
| 2018 |
Mohammed Ismail W, Pagel KA, Pejaver V, Zhang SV, Casasa S, Mort M, Cooper DN, Hahn MW, Radivojac P. The sequencing and interpretation of the genome obtained from a Serbian individual. Plos One. 13: e0208901. PMID 30566479 DOI: 10.1371/Journal.Pone.0208901 |
0.31 |
|
| 2018 |
Wang J, Pejaver VR, Dann GP, Wolf MY, Kellis M, Huang Y, Garcia BA, Radivojac P, Kashina A. Target site specificity and in vivo complexity of the mammalian arginylome. Scientific Reports. 8: 16177. PMID 30385798 DOI: 10.1038/S41598-018-34639-6 |
0.327 |
|
| 2018 |
Yamada M, Tang J, Lugo-Martinez J, Hodzic E, Shrestha R, Saha A, Ouyang H, Yin D, Mamitsuka H, Sahinalp C, Radivojac P, Menczer F, Chang Y. Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data Ieee Transactions On Knowledge and Data Engineering. 30: 1352-1365. DOI: 10.1109/Tkde.2018.2789451 |
0.327 |
|
| 2017 |
Pagel KA, Pejaver V, Lin GN, Nam HJ, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P. When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants. Bioinformatics (Oxford, England). 33: i389-i398. PMID 28882004 DOI: 10.1093/Bioinformatics/Btx272 |
0.312 |
|
| 2017 |
Daneshjou R, Wang Y, Bromberg Y, Bovo S, Martelli PL, Babbi G, Lena PD, Casadio R, Edwards M, Gifford D, Jones DT, Sundaram L, Bhat R, Li X, Pal LR, ... ... Radivojac P, et al. Working towards precision medicine: predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges. Human Mutation. PMID 28634997 DOI: 10.1002/Humu.23280 |
0.378 |
|
| 2017 |
Pejaver V, Mooney SD, Radivojac P. Missense variant pathogenicity predictors generalize well across a range of function-specific prediction challenges. Human Mutation. PMID 28508593 DOI: 10.1002/Humu.23258 |
0.406 |
|
| 2017 |
Friedberg I, Radivojac P. Community-Wide Evaluation of Computational Function Prediction. Methods in Molecular Biology (Clifton, N.J.). 1446: 133-146. PMID 27812940 DOI: 10.1007/978-1-4939-3743-1_10 |
0.378 |
|
| 2016 |
Ioannidis NM, Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, Musolf A, Li Q, Holzinger E, Karyadi D, Cannon-Albright LA, Teerlink CC, Stanford JL, Isaacs WB, Xu J, ... ... Radivojac P, et al. REVEL: an Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants. American Journal of Human Genetics. PMID 27666373 DOI: 10.1016/J.Ajhg.2016.08.016 |
0.346 |
|
| 2016 |
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, ... ... Radivojac P, et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biology. 17: 184. PMID 27604469 DOI: 10.1186/S13059-016-1037-6 |
0.431 |
|
| 2016 |
Lugo-Martinez J, Pejaver V, Pagel KA, Jain S, Mort M, Cooper DN, Mooney SD, Radivojac P. The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease. Plos Computational Biology. 12: e1005091. PMID 27564311 DOI: 10.1371/Journal.Pcbi.1005091 |
0.375 |
|
| 2016 |
Reddy KD, Malipeddi J, DeForte S, Pejaver V, Radivojac P, Uversky VN, Deschenes RJ. Physicochemical sequence characteristics that influence S-palmitoylation propensity. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 27498722 DOI: 10.1080/07391102.2016.1217275 |
0.445 |
|
| 2016 |
Rost B, Radivojac P, Bromberg Y. Protein function in precision medicine: deep understanding with machine learning. Febs Letters. PMID 27423136 DOI: 10.1002/1873-3468.12307 |
0.345 |
|
| 2016 |
Peterson TA, Mort M, Cooper DN, Radivojac P, Kann MG, Mooney SD. Regulatory Single Nucleotide Variant Predictor (RSVP) Increases Predictive Performance of Functional Regulatory Variants. Human Mutation. PMID 27406314 DOI: 10.1002/Humu.23049 |
0.372 |
|
| 2016 |
Ji C, Li S, Reilly JP, Radivojac P, Tang H. XLSearch: a probabilistic database search algorithm for identifying cross-linked peptides. Journal of Proteome Research. PMID 27068484 DOI: 10.1021/Acs.Jproteome.6B00004 |
0.303 |
|
| 2016 |
Kovacevic J, Radivojac P. Using structured output learning in automated protein function annotation F1000research. 5. DOI: 10.7490/F1000Research.1111820.1 |
0.327 |
|
| 2015 |
Friedberg I, Wass MN, Mooney SD, Radivojac P. Ten simple rules for a community computational challenge. Plos Computational Biology. 11: e1004150. PMID 25906249 DOI: 10.1371/Journal.Pcbi.1004150 |
0.364 |
|
| 2014 |
Pereira L, Soares P, Triska P, Rito T, van der Waerden A, Li B, Radivojac P, Samuels DC. Global human frequencies of predicted nuclear pathogenic variants and the role played by protein hydrophobicity in pathogenicity potential. Scientific Reports. 4: 7155. PMID 25412673 DOI: 10.1038/Srep07155 |
0.333 |
|
| 2014 |
Jiang Y, Clark WT, Friedberg I, Radivojac P. The impact of incomplete knowledge on the evaluation of protein function prediction: a structured-output learning perspective. Bioinformatics (Oxford, England). 30: i609-16. PMID 25161254 DOI: 10.1093/Bioinformatics/Btu472 |
0.372 |
|
| 2014 |
Pejaver V, Hsu WL, Xin F, Dunker AK, Uversky VN, Radivojac P. The structural and functional signatures of proteins that undergo multiple events of post-translational modification. Protein Science : a Publication of the Protein Society. 23: 1077-93. PMID 24888500 DOI: 10.1002/Pro.2494 |
0.434 |
|
| 2014 |
Wass MN, Mooney SD, Linial M, Radivojac P, Friedberg I. The automated function prediction SIG looks back at 2013 and prepares for 2014 Bioinformatics. 30: 2091-2092. PMID 24590444 DOI: 10.1093/Bioinformatics/Btu117 |
0.351 |
|
| 2014 |
Clark WT, Radivojac P. Vector quantization kernels for the classification of protein sequences and structures. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 316-27. PMID 24297558 |
0.361 |
|
| 2013 |
Clark WT, Radivojac P. Information-theoretic evaluation of predicted ontological annotations. Bioinformatics (Oxford, England). 29: i53-61. PMID 23813009 DOI: 10.1093/Bioinformatics/Btt228 |
0.369 |
|
| 2013 |
Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, et al. A large-scale evaluation of computational protein function prediction. Nature Methods. 10: 221-7. PMID 23353650 DOI: 10.1038/Nmeth.2340 |
0.433 |
|
| 2013 |
Thompson BA, Greenblatt MS, Vallee MP, Herkert JC, Tessereau C, Young EL, Adzhubey IA, Li B, Bell R, Feng B, Mooney SD, Radivojac P, Sunyaev SR, Frebourg T, Hofstra RM, et al. Calibration of multiple in silico tools for predicting pathogenicity of mismatch repair gene missense substitutions. Human Mutation. 34: 255-65. PMID 22949387 DOI: 10.1002/Humu.22214 |
0.343 |
|
| 2013 |
Bagchi A, Mort M, Li B, Xin F, Carlise C, Oron T, Powell C, Youn E, Radivojac P, Cooper DN, Mooney SD. Analysis of Features from Protein-protein Hetero-complex Structures to Predict Protein Interaction Interfaces Using Machine Learning Procedia Technology. 10: 62-66. DOI: 10.1016/J.Protcy.2013.12.337 |
0.435 |
|
| 2012 |
Li YF, Arnold RJ, Radivojac P, Tang H. Protein identification problem from a Bayesian point of view. Statistics and Its Interface. 5: 21-37. PMID 24761189 DOI: 10.4310/Sii.2012.V5.N1.A3 |
0.335 |
|
| 2012 |
Li YF, Radivojac P. Computational approaches to protein inference in shotgun proteomics. Bmc Bioinformatics. 13: S4. PMID 23176300 DOI: 10.1186/1471-2105-13-S16-S4 |
0.39 |
|
| 2012 |
Xin F, Radivojac P. Post-translational modifications induce significant yet not extreme changes to protein structure. Bioinformatics (Oxford, England). 28: 2905-13. PMID 22947645 DOI: 10.1093/Bioinformatics/Bts541 |
0.373 |
|
| 2012 |
Nussinov R, Tsai CJ, Xin F, Radivojac P. Allosteric post-translational modification codes. Trends in Biochemical Sciences. 37: 447-55. PMID 22884395 DOI: 10.1016/J.Tibs.2012.07.001 |
0.321 |
|
| 2011 |
Zhao Y, Clark WT, Mort M, Cooper DN, Radivojac P, Mooney SD. Prediction of functional regulatory SNPs in monogenic and complex disease. Human Mutation. 32: 1183-90. PMID 21796725 DOI: 10.1002/Humu.21559 |
0.31 |
|
| 2011 |
Xin F, Radivojac P. Computational methods for identification of functional residues in protein structures. Current Protein & Peptide Science. 12: 456-69. PMID 21787297 DOI: 10.2174/138920311796957685 |
0.454 |
|
| 2011 |
Nehrt NL, Clark WT, Radivojac P, Hahn MW. Testing the ortholog conjecture with comparative functional genomic data from mammals. Plos Computational Biology. 7: e1002073. PMID 21695233 DOI: 10.1371/Journal.Pcbi.1002073 |
0.38 |
|
| 2011 |
Clark WT, Radivojac P. Analysis of protein function and its prediction from amino acid sequence. Proteins. 79: 2086-96. PMID 21671271 DOI: 10.1002/Prot.23029 |
0.438 |
|
| 2011 |
Pereira L, Soares P, Radivojac P, Li B, Samuels DC. Comparing phylogeny and the predicted pathogenicity of protein variations reveals equal purifying selection across the global human mtDNA diversity. American Journal of Human Genetics. 88: 433-9. PMID 21457906 DOI: 10.1016/J.Ajhg.2011.03.006 |
0.379 |
|
| 2010 |
Li YF, Arnold RJ, Tang H, Radivojac P. The importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics. Journal of Proteome Research. 9: 6288-97. PMID 21067214 DOI: 10.1021/Pr1005586 |
0.315 |
|
| 2010 |
Bohrer BC, Li YF, Reilly JP, Clemmer DE, DiMarchi RD, Radivojac P, Tang H, Arnold RJ. Combinatorial libraries of synthetic peptides as a model for shotgun proteomics. Analytical Chemistry. 82: 6559-68. PMID 20669997 DOI: 10.1021/Ac100910A |
0.312 |
|
| 2010 |
Xin F, Myers S, Li YF, Cooper DN, Mooney SD, Radivojac P. Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. Bioinformatics (Oxford, England). 26: 1975-82. PMID 20551136 DOI: 10.1093/Bioinformatics/Btq319 |
0.311 |
|
| 2010 |
Vacic V, Iakoucheva LM, Lonardi S, Radivojac P. Graphlet kernels for prediction of functional residues in protein structures. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 55-72. PMID 20078397 DOI: 10.1089/Cmb.2009.0029 |
0.43 |
|
| 2010 |
Mort M, Evani US, Krishnan VG, Kamati KK, Baenziger PH, Bagchi A, Peters BJ, Sathyesh R, Li B, Sun Y, Xue B, Shah NH, Kann MG, Cooper DN, Radivojac P, et al. In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. Human Mutation. 31: 335-46. PMID 20052762 DOI: 10.1002/Humu.21192 |
0.421 |
|
| 2010 |
Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM. Identification, analysis, and prediction of protein ubiquitination sites. Proteins. 78: 365-80. PMID 19722269 DOI: 10.1002/Prot.22555 |
0.406 |
|
| 2009 |
Lee E, Jung H, Radivojac P, Kim JW, Lee D. Analysis of AML genes in dysregulated molecular networks. Bmc Bioinformatics. 10: S2. PMID 19761572 DOI: 10.1186/1471-2105-10-S9-S2 |
0.31 |
|
| 2009 |
Li B, Krishnan VG, Mort ME, Xin F, Kamati KK, Cooper DN, Mooney SD, Radivojac P. Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinformatics (Oxford, England). 25: 2744-50. PMID 19734154 DOI: 10.1093/Bioinformatics/Btp528 |
0.384 |
|
| 2009 |
Mohan A, Uversky VN, Radivojac P. Influence of sequence changes and environment on intrinsically disordered proteins. Plos Computational Biology. 5: e1000497. PMID 19730682 DOI: 10.1371/Journal.Pcbi.1000497 |
0.484 |
|
| 2009 |
Li YF, Arnold RJ, Li Y, Radivojac P, Sheng Q, Tang H. A bayesian approach to protein inference problem in shotgun proteomics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1183-93. PMID 19645593 DOI: 10.1089/Cmb.2009.0018 |
0.372 |
|
| 2008 |
Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM. Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks. Genome Biology. 9: S11. PMID 18834489 DOI: 10.1186/Gb-2008-9-S2-S11 |
0.349 |
|
| 2008 |
Dalkilic MM, Costello JC, Clark WT, Radivojac P. From protein-disease associations to disease informatics. Frontiers in Bioscience : a Journal and Virtual Library. 13: 3391-407. PMID 18508441 DOI: 10.2741/2934 |
0.312 |
|
| 2008 |
Saha S, Harrison SH, Shen C, Tang H, Radivojac P, Arnold RJ, Zhang X, Chen JY. HIP2: an online database of human plasma proteins from healthy individuals. Bmc Medical Genomics. 1: 12. PMID 18439290 DOI: 10.1186/1755-8794-1-12 |
0.304 |
|
| 2008 |
Mohan A, Sullivan WJ, Radivojac P, Dunker AK, Uversky VN. Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes. Molecular Biosystems. 4: 328-40. PMID 18354786 DOI: 10.1039/B719168E |
0.479 |
|
| 2008 |
Radivojac P, Peng K, Clark WT, Peters BJ, Mohan A, Boyle SM, Mooney SD. An integrated approach to inferring gene-disease associations in humans. Proteins. 72: 1030-7. PMID 18300252 DOI: 10.1002/Prot.21989 |
0.57 |
|
| 2008 |
Singh A, Olowoyeye A, Baenziger PH, Dantzer J, Kann MG, Radivojac P, Heiland R, Mooney SD. MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Research. 36: D815-9. PMID 17827212 DOI: 10.1093/Nar/Gkm659 |
0.332 |
|
| 2008 |
Radivojac P, Peng K, Clark WT, Peters BJ, Mohan A, Boyle SM, Mooney SD. Predicting Protein-Disease Relationships Using Sequence, Physicochemical Properties, and Molecular Function Information Nature Precedings. DOI: 10.1038/Npre.2008.2239.1 |
0.51 |
|
| 2007 |
Uversky VN, Radivojac P, Iakoucheva LM, Obradovic Z, Dunker AK. Prediction of intrinsic disorder and its use in functional proteomics. Methods in Molecular Biology (Clifton, N.J.). 408: 69-92. PMID 18314578 DOI: 10.1007/978-1-59745-547-3_5 |
0.661 |
|
| 2007 |
Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, Uversky VN, Dunker AK. Characterization of molecular recognition features, MoRFs, and their binding partners. Journal of Proteome Research. 6: 2351-66. PMID 17488107 DOI: 10.1021/Pr0701411 |
0.393 |
|
| 2007 |
Youn E, Peters B, Radivojac P, Mooney SD. Evaluation of features for catalytic residue prediction in novel folds. Protein Science : a Publication of the Protein Society. 16: 216-26. PMID 17189479 DOI: 10.1110/Ps.062523907 |
0.424 |
|
| 2007 |
Radivojac P, Iakoucheva LM, Oldfield CJ, Obradovic Z, Uversky VN, Dunker AK. Intrinsic disorder and functional proteomics. Biophysical Journal. 92: 1439-56. PMID 17158572 DOI: 10.1529/Biophysj.106.094045 |
0.658 |
|
| 2006 |
Mohan A, Oldfield CJ, Radivojac P, Vacic V, Cortese MS, Dunker AK, Uversky VN. Analysis of molecular recognition features (MoRFs). Journal of Molecular Biology. 362: 1043-59. PMID 16935303 DOI: 10.1016/J.Jmb.2006.07.087 |
0.478 |
|
| 2006 |
Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, Radivojac P, Uversky VN, Vidal M, Iakoucheva LM. Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. Plos Computational Biology. 2: e100. PMID 16884331 DOI: 10.1371/Journal.Pcbi.0020100 |
0.491 |
|
| 2006 |
Tang H, Arnold RJ, Alves P, Xun Z, Clemmer DE, Novotny MV, Reilly JP, Radivojac P. A computational approach toward label-free protein quantification using predicted peptide detectability. Bioinformatics (Oxford, England). 22: e481-8. PMID 16873510 DOI: 10.1093/Bioinformatics/Btl237 |
0.349 |
|
| 2006 |
Roy S, Schnell S, Radivojac P. Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map. Computational Biology and Chemistry. 30: 241-8. PMID 16798096 DOI: 10.1016/J.Compbiolchem.2006.04.005 |
0.384 |
|
| 2006 |
Romero PR, Zaidi S, Fang YY, Uversky VN, Radivojac P, Oldfield CJ, Cortese MS, Sickmeier M, LeGall T, Obradovic Z, Dunker AK. Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms. Proceedings of the National Academy of Sciences of the United States of America. 103: 8390-5. PMID 16717195 DOI: 10.1073/Pnas.0507916103 |
0.659 |
|
| 2006 |
Vacic V, Iakoucheva LM, Radivojac P. Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. Bioinformatics (Oxford, England). 22: 1536-7. PMID 16632492 DOI: 10.1093/Bioinformatics/Btl151 |
0.303 |
|
| 2006 |
Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z. Length-dependent prediction of protein intrinsic disorder. Bmc Bioinformatics. 7: 208. PMID 16618368 DOI: 10.1186/1471-2105-7-208 |
0.72 |
|
| 2006 |
Radivojac P, Vucetic S, O'Connor TR, Uversky VN, Obradovic Z, Dunker AK. Calmodulin signaling: analysis and prediction of a disorder-dependent molecular recognition. Proteins. 63: 398-410. PMID 16493654 DOI: 10.1002/Prot.20873 |
0.591 |
|
| 2005 |
Obradovic Z, Peng K, Vucetic S, Radivojac P, Dunker AK. Exploiting heterogeneous sequence properties improves prediction of protein disorder. Proteins. 61: 176-82. PMID 16187360 DOI: 10.1002/Prot.20735 |
0.702 |
|
| 2005 |
Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK, Obradovic Z. Optimizing long intrinsic disorder predictors with protein evolutionary information. Journal of Bioinformatics and Computational Biology. 3: 35-60. PMID 15751111 DOI: 10.1142/S0219720005000886 |
0.724 |
|
| 2005 |
Vucetic S, Obradovic Z, Vacic V, Radivojac P, Peng K, Iakoucheva LM, Cortese MS, Lawson JD, Brown CJ, Sikes JG, Newton CD, Dunker AK. DisProt: a database of protein disorder. Bioinformatics (Oxford, England). 21: 137-40. PMID 15310560 DOI: 10.1093/Bioinformatics/Bth476 |
0.712 |
|
| 2004 |
Radivojac P, Chawla NV, Dunker AK, Obradovic Z. Classification and knowledge discovery in protein databases. Journal of Biomedical Informatics. 37: 224-39. PMID 15465476 DOI: 10.1016/J.Jbi.2004.07.008 |
0.54 |
|
| 2004 |
Iakoucheva LM, Radivojac P, Brown CJ, O'Connor TR, Sikes JG, Obradovic Z, Dunker AK. The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Research. 32: 1037-49. PMID 14960716 DOI: 10.1093/Nar/Gkh253 |
0.617 |
|
| 2004 |
Radivojac P, Obradovic Z, Smith DK, Zhu G, Vucetic S, Brown CJ, Lawson JD, Dunker AK. Protein flexibility and intrinsic disorder. Protein Science : a Publication of the Protein Society. 13: 71-80. PMID 14691223 DOI: 10.1110/ps.03128904 |
0.561 |
|
| 2004 |
Radivojac P. Protein Structure Prediction: Bioinformatics Approach Briefings in Bioinformatics. 5: 207-209. DOI: 10.1093/Bib/5.2.207 |
0.395 |
|
| 2004 |
Radivojac P, Obradovic Z, Keith Dunker A, Vucetic S. Feature selection filters based on the permutation test Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3201: 334-346. |
0.418 |
|
| 2003 |
Obradovic Z, Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK. Predicting intrinsic disorder from amino acid sequence. Proteins. 53: 566-72. PMID 14579347 DOI: 10.1002/Prot.10532 |
0.697 |
|
| 2003 |
Smith DK, Radivojac P, Obradovic Z, Dunker AK, Zhu G. Improved amino acid flexibility parameters. Protein Science : a Publication of the Protein Society. 12: 1060-72. PMID 12717028 DOI: 10.1110/Ps.0236203 |
0.551 |
|
| 2003 |
Radivojac P, Korad U, Sivalingam KM, Obradovic Z. Learning from class-imbalanced data in wireless sensor networks Ieee Vehicular Technology Conference. 58: 3030-3034. |
0.421 |
|
| 2002 |
Radivojac P, Obradovic Z, Brown CJ, Dunker AK. Improving sequence alignments for intrinsically disordered proteins. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 589-600. PMID 11928510 |
0.59 |
|
| 2001 |
Vucetic S, Radivojac P, Obradovic Z, Brown CJ, Dunker AK. Methods for improving protein disorder prediction Proceedings of the International Joint Conference On Neural Networks. 4: 2718-2723. |
0.604 |
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