| Year |
Citation |
Score |
| 2021 |
de la Cuesta-Zuluaga J, Spector TD, Youngblut ND, Ley RE. Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut. Msystems. 6. PMID 33563787 DOI: 10.1128/mSystems.00939-20 |
0.309 |
|
| 2020 |
Johnson EL, Heaver SL, Waters JL, Kim BI, Bretin A, Goodman AL, Gewirtz AT, Worgall TS, Ley RE. Sphingolipids produced by gut bacteria enter host metabolic pathways impacting ceramide levels. Nature Communications. 11: 2471. PMID 32424203 DOI: 10.1038/S41467-020-16274-W |
0.338 |
|
| 2020 |
Ruaud A, Esquivel-Elizondo S, de la Cuesta-Zuluaga J, Waters JL, Angenent LT, Youngblut ND, Ley RE. Syntrophy via Interspecies H Transfer between and Underlies Their Global Cooccurrence in the Human Gut. Mbio. 11. PMID 32019803 DOI: 10.1128/Mbio.03235-19 |
0.329 |
|
| 2019 |
Tran HQ, Ley RE, Gewirtz AT, Chassaing B. Flagellin-elicited adaptive immunity suppresses flagellated microbiota and vaccinates against chronic inflammatory diseases. Nature Communications. 10: 5650. PMID 31827095 DOI: 10.1038/S41467-019-13538-Y |
0.306 |
|
| 2019 |
de la Cuesta-Zuluaga J, Ley RE, Youngblut ND. Struo: a pipeline for building custom databases for common metagenome profilers. Bioinformatics (Oxford, England). PMID 31778148 DOI: 10.1093/Bioinformatics/Btz899 |
0.36 |
|
| 2019 |
Waters JL, Ley RE. The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health. Bmc Biology. 17: 83. PMID 31660948 DOI: 10.1186/S12915-019-0699-4 |
0.353 |
|
| 2019 |
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Ley R, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6 |
0.605 |
|
| 2019 |
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Ley R, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9 |
0.599 |
|
| 2019 |
Youngblut ND, Reischer GH, Walters W, Schuster N, Walzer C, Stalder G, Ley RE, Farnleitner AH. Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. Nature Communications. 10: 2200. PMID 31097702 DOI: 10.1038/S41467-019-10191-3 |
0.398 |
|
| 2019 |
Poole AC, Goodrich JK, Youngblut ND, Luque GG, Ruaud A, Sutter JL, Waters JL, Shi Q, El-Hadidi M, Johnson LM, Bar HY, Huson DH, Booth JG, Ley RE. Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes. Cell Host & Microbe. 25: 553-564.e7. PMID 30974084 DOI: 10.1016/J.Chom.2019.03.001 |
0.358 |
|
| 2019 |
Moreno-Gallego JL, Chou SP, Di Rienzi SC, Goodrich JK, Spector TD, Bell JT, Youngblut ND, Hewson I, Reyes A, Ley RE. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Cell Host & Microbe. 25: 261-272.e5. PMID 30763537 DOI: 10.1016/J.Chom.2019.01.019 |
0.315 |
|
| 2018 |
Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, et al. Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. PMID 29440750 DOI: 10.1038/S41564-018-0114-X |
0.322 |
|
| 2018 |
Heaver SL, Johnson EL, Ley RE. Sphingolipids in host-microbial interactions. Current Opinion in Microbiology. 43: 92-99. PMID 29328957 DOI: 10.1016/J.Mib.2017.12.011 |
0.349 |
|
| 2018 |
Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8 |
0.354 |
|
| 2017 |
Goodrich JK, Davenport ER, Clark AG, Ley RE. The Relationship Between the Human Genome and Microbiome Comes into View. Annual Review of Genetics. PMID 28934590 DOI: 10.1146/Annurev-Genet-110711-155532 |
0.374 |
|
| 2016 |
Johnson EL, Heaver SL, Walters WA, Ley RE. Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes. Journal of Molecular Medicine (Berlin, Germany). PMID 27900395 DOI: 10.1007/S00109-016-1492-2 |
0.37 |
|
| 2016 |
Davenport ER, Goodrich JK, Bell JT, Spector TD, Ley RE, Clark AG. ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins. Bmc Genomics. 17: 941. PMID 27871240 DOI: 10.1186/S12864-016-3290-1 |
0.33 |
|
| 2016 |
Beaumont M, Goodrich JK, Jackson MA, Yet I, Davenport ER, Vieira-Silva S, Debelius J, Pallister T, Mangino M, Raes J, Knight R, Clark AG, Ley RE, Spector TD, Bell JT. Heritable components of the human fecal microbiome are associated with visceral fat. Genome Biology. 17: 189. PMID 27666579 DOI: 10.1186/S13059-016-1052-7 |
0.303 |
|
| 2016 |
Ley RE, Gewirtz AT. Corralling Colonic Flagellated Microbiota. The New England Journal of Medicine. 375: 85-7. PMID 27406353 DOI: 10.1056/Nejmcibr1604801 |
0.305 |
|
| 2016 |
Goodrich JK, Davenport ER, Beaumont M, Jackson MA, Knight R, Ober C, Spector TD, Bell JT, Clark AG, Ley RE. Genetic Determinants of the Gut Microbiome in UK Twins. Cell Host & Microbe. 19: 731-43. PMID 27173935 DOI: 10.1016/J.Chom.2016.04.017 |
0.354 |
|
| 2016 |
Goodrich JK, Davenport ER, Waters JL, Clark AG, Ley RE. Cross-species comparisons of host genetic associations with the microbiome. Science (New York, N.Y.). 352: 532-5. PMID 27126034 DOI: 10.1126/Science.Aad9379 |
0.385 |
|
| 2016 |
Jackson MA, Jeffery IB, Beaumont M, Bell JT, Clark AG, Ley RE, O'Toole PW, Spector TD, Steves CJ. Erratum to: signatures of early frailty in the gut microbiota. Genome Medicine. 8: 21. PMID 26888550 DOI: 10.1186/S13073-016-0275-2 |
0.305 |
|
| 2016 |
Ley RE. Gut microbiota in 2015: Prevotella in the gut: choose carefully. Nature Reviews. Gastroenterology & Hepatology. 13: 69-70. PMID 26828918 DOI: 10.1038/Nrgastro.2016.4 |
0.369 |
|
| 2015 |
Friedman ES, McPhillips LE, Werner JJ, Poole AC, Ley RE, Walter MT, Angenent LT. Methane Emission in a Specific Riparian-Zone Sediment Decreased with Bioelectrochemical Manipulation and Corresponded to the Microbial Community Dynamics. Frontiers in Microbiology. 6: 1523. PMID 26793170 DOI: 10.3389/Fmicb.2015.01523 |
0.325 |
|
| 2015 |
Jin Z, Di Rienzi SC, Janzon A, Werner JJ, Angenent LT, Dangl JL, Fowler DM, Ley RE. Novel rhizosphere soil alleles for the enzyme ACC deaminase queried functionally with an in-vivo competition assay. Applied and Environmental Microbiology. PMID 26637602 DOI: 10.1128/Aem.03074-15 |
0.356 |
|
| 2015 |
Vierheilig J, Savio D, Ley RE, Mach RL, Farnleitner AH, Reischer GH. Potential applications of next generation DNA sequencing of 16S rRNA gene amplicons in microbial water quality monitoring. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 72: 1962-72. PMID 26606090 DOI: 10.2166/Wst.2015.407 |
0.323 |
|
| 2015 |
Blekhman R, Goodrich JK, Huang K, Sun Q, Bukowski R, Bell JT, Spector TD, Keinan A, Ley RE, Gevers D, Clark AG. Host genetic variation impacts microbiome composition across human body sites. Genome Biology. 16: 191. PMID 26374288 DOI: 10.1186/S13059-015-0759-1 |
0.379 |
|
| 2015 |
Hacquard S, Garrido-Oter R, González A, Spaepen S, Ackermann G, Lebeis S, McHardy AC, Dangl JL, Knight R, Ley R, Schulze-Lefert P. Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe. 17: 603-616. PMID 25974302 DOI: 10.1016/J.Chom.2015.04.009 |
0.374 |
|
| 2015 |
Chassaing B, Koren O, Goodrich JK, Poole AC, Srinivasan S, Ley RE, Gewirtz AT. Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature. 519: 92-6. PMID 25731162 DOI: 10.1038/Nature14232 |
0.352 |
|
| 2015 |
Panke-Buisse K, Poole AC, Goodrich JK, Ley RE, Kao-Kniffin J. Selection on soil microbiomes reveals reproducible impacts on plant function. The Isme Journal. 9: 980-9. PMID 25350154 DOI: 10.1038/Ismej.2014.196 |
0.343 |
|
| 2014 |
Kumar H, Lund R, Laiho A, Lundelin K, Ley RE, Isolauri E, Salminen S. Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis. Mbio. 5. PMID 25516615 DOI: 10.1128/Mbio.02113-14 |
0.347 |
|
| 2014 |
Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, Spector TD, Clark AG, Ley RE. Human genetics shape the gut microbiome. Cell. 159: 789-99. PMID 25417156 DOI: 10.1016/J.Cell.2014.09.053 |
0.362 |
|
| 2014 |
Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J, White O. Advancing the microbiome research community. Cell. 159: 227-30. PMID 25303518 DOI: 10.1016/J.Cell.2014.09.022 |
0.306 |
|
| 2014 |
Leifer CA, McConkey C, Li S, Chassaing B, Gewirtz AT, Ley RE. Linking genetic variation in human Toll-like receptor 5 genes to the gut microbiome's potential to cause inflammation. Immunology Letters. 162: 3-9. PMID 25284610 DOI: 10.1016/J.Imlet.2014.07.017 |
0.336 |
|
| 2014 |
Perez-Muñoz ME, Bergstrom K, Peng V, Schmaltz R, Jimenez-Cardona R, Marsteller N, McGee S, Clavel T, Ley R, Fu J, Xia L, Peterson DA. Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis. Gut Microbes. 5: 286-95. PMID 24662098 DOI: 10.4161/Gmic.28622 |
0.318 |
|
| 2014 |
Ley RE. Harnessing microbiota to kill a pathogen: the sweet tooth of Clostridium difficile. Nature Medicine. 20: 248-9. PMID 24603797 DOI: 10.1038/Nm.3494 |
0.328 |
|
| 2014 |
Chassaing B, Koren O, Carvalho FA, Ley RE, Gewirtz AT. AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition. Gut. 63: 1069-80. PMID 23896971 DOI: 10.1136/Gutjnl-2013-304909 |
0.324 |
|
| 2013 |
Petschow B, Doré J, Hibberd P, Dinan T, Reid G, Blaser M, Cani PD, Degnan FH, Foster J, Gibson G, Hutton J, Klaenhammer TR, Ley R, Nieuwdorp M, Pot B, et al. Probiotics, prebiotics, and the host microbiome: the science of translation. Annals of the New York Academy of Sciences. 1306: 1-17. PMID 24266656 DOI: 10.1111/Nyas.12303 |
0.319 |
|
| 2013 |
Peiffer JA, Ley RE. Exploring the maize rhizosphere microbiome in the field: A glimpse into a highly complex system. Communicative & Integrative Biology. 6: e25177. PMID 24265851 DOI: 10.4161/Cib.25177 |
0.343 |
|
| 2013 |
Cullender TC, Chassaing B, Janzon A, Kumar K, Muller CE, Werner JJ, Angenent LT, Bell ME, Hay AG, Peterson DA, Walter J, Vijay-Kumar M, Gewirtz AT, Ley RE. Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut. Cell Host & Microbe. 14: 571-81. PMID 24237702 DOI: 10.1016/J.Chom.2013.10.009 |
0.338 |
|
| 2013 |
Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife. 2: e01102. PMID 24137540 DOI: 10.7554/Elife.01102 |
0.346 |
|
| 2013 |
Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, Dangl JL, Buckler ES, Ley RE. Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proceedings of the National Academy of Sciences of the United States of America. 110: 6548-53. PMID 23576752 DOI: 10.1073/Pnas.1302837110 |
0.347 |
|
| 2013 |
Ley RE. Nutrition: When guests turn hostile. Nature. 494: 437-8. PMID 23446414 DOI: 10.1038/494437A |
0.329 |
|
| 2013 |
Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE. A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. Plos Computational Biology. 9: e1002863. PMID 23326225 DOI: 10.1371/Journal.Pcbi.1002863 |
0.346 |
|
| 2013 |
Rienzi SCD, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE. Author response: The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria Elife. DOI: 10.7554/Elife.01102.024 |
0.305 |
|
| 2012 |
Carvalho FA, Koren O, Goodrich JK, Johansson ME, Nalbantoglu I, Aitken JD, Su Y, Chassaing B, Walters WA, González A, Clemente JC, Cullender TC, Barnich N, Darfeuille-Michaud A, Vijay-Kumar M, ... ... Ley RE, et al. Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice. Cell Host & Microbe. 12: 139-52. PMID 22863420 DOI: 10.1016/J.Chom.2012.07.004 |
0.336 |
|
| 2012 |
Koren O, Goodrich JK, Cullender TC, Spor A, Laitinen K, Bäckhed HK, Gonzalez A, Werner JJ, Angenent LT, Knight R, Bäckhed F, Isolauri E, Salminen S, Ley RE. Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell. 150: 470-80. PMID 22863002 DOI: 10.1016/J.Cell.2012.07.008 |
0.305 |
|
| 2012 |
Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, et al. Defining the core Arabidopsis thaliana root microbiome. Nature. 488: 86-90. PMID 22859206 DOI: 10.1038/Nature11237 |
0.375 |
|
| 2012 |
Larsson E, Tremaroli V, Lee YS, Koren O, Nookaew I, Fricker A, Nielsen J, Ley RE, Bäckhed F. Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut. 61: 1124-31. PMID 22115825 DOI: 10.1136/Gutjnl-2011-301104 |
0.375 |
|
| 2012 |
Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, Caporaso JG, Angenent LT, Knight R, Ley RE. Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. The Isme Journal. 6: 94-103. PMID 21716311 DOI: 10.1038/Ismej.2011.82 |
0.37 |
|
| 2012 |
Ravussin Y, Koren O, Spor A, LeDuc C, Gutman R, Stombaugh J, Knight R, Ley RE, Leibel RL. Responses of gut microbiota to diet composition and weight loss in lean and obese mice. Obesity (Silver Spring, Md.). 20: 738-47. PMID 21593810 DOI: 10.1038/Oby.2011.111 |
0.305 |
|
| 2011 |
Vaishnava S, Yamamoto M, Severson KM, Ruhn KA, Yu X, Koren O, Ley R, Wakeland EK, Hooper LV. The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine. Science (New York, N.Y.). 334: 255-8. PMID 21998396 DOI: 10.1126/Science.1209791 |
0.344 |
|
| 2011 |
Walter J, Ley R. The human gut microbiome: ecology and recent evolutionary changes. Annual Review of Microbiology. 65: 411-29. PMID 21682646 DOI: 10.1146/Annurev-Micro-090110-102830 |
0.38 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Ley RE, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.73 |
|
| 2011 |
Dominguez-Bello MG, Blaser MJ, Ley RE, Knight R. Development of the human gastrointestinal microbiota and insights from high-throughput sequencing. Gastroenterology. 140: 1713-9. PMID 21530737 DOI: 10.1053/J.Gastro.2011.02.011 |
0.373 |
|
| 2011 |
Spor A, Koren O, Ley R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nature Reviews. Microbiology. 9: 279-90. PMID 21407244 DOI: 10.1038/Nrmicro2540 |
0.357 |
|
| 2011 |
Koren O, Spor A, Felin J, Fåk F, Stombaugh J, Tremaroli V, Behre CJ, Knight R, Fagerberg B, Ley RE, Bäckhed F. Human oral, gut, and plaque microbiota in patients with atherosclerosis. Proceedings of the National Academy of Sciences of the United States of America. 108: 4592-8. PMID 20937873 DOI: 10.1073/Pnas.1011383107 |
0.34 |
|
| 2011 |
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, Angenent LT, Ley RE. Succession of microbial consortia in the developing infant gut microbiome. Proceedings of the National Academy of Sciences of the United States of America. 108: 4578-85. PMID 20668239 DOI: 10.1073/Pnas.1000081107 |
0.337 |
|
| 2010 |
Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, et al. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Standards in Genomic Sciences. 3: 249-53. PMID 21304728 DOI: 10.4056/Aigs.1443528 |
0.314 |
|
| 2010 |
Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Direct sequencing of the human microbiome readily reveals community differences. Genome Biology. 11: 210. PMID 20441597 DOI: 10.1186/Gb-2010-11-5-210 |
0.738 |
|
| 2010 |
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. 7: 335-6. PMID 20383131 DOI: 10.1038/Nmeth.F.303 |
0.646 |
|
| 2010 |
Ley RE. Obesity and the human microbiome. Current Opinion in Gastroenterology. 26: 5-11. PMID 19901833 DOI: 10.1097/Mog.0B013E328333D751 |
0.314 |
|
| 2010 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Ley RE, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1 |
0.648 |
|
| 2010 |
Goodrich-Blair H, Ané JM, Bever JD, Bordenstein SR, Bright M, Chaston JM, Clay K, Currie CR, Douglas AE, Gerardo N, Harrison MJ, Ley RE, McFall-Ngai M, Mukherjee A, Rader B, et al. Symbiosis research, technology, and education: Proceedings of the 6th International Symbiosis Society Congress held in Madison Wisconsin, USA, August 2009 Symbiosis. 51: 1-12. DOI: 10.1007/S13199-010-0076-0 |
0.314 |
|
| 2009 |
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature. 457: 480-4. PMID 19043404 DOI: 10.1038/Nature07540 |
0.41 |
|
| 2008 |
Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, Hu C, Wong FS, Szot GL, Bluestone JA, Gordon JI, Chervonsky AV. Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature. 455: 1109-13. PMID 18806780 DOI: 10.1038/Nature07336 |
0.338 |
|
| 2008 |
Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. Worlds within worlds: evolution of the vertebrate gut microbiota. Nature Reviews. Microbiology. 6: 776-88. PMID 18794915 DOI: 10.1038/Nrmicro1978 |
0.417 |
|
| 2008 |
Godoy-Vitorino F, Ley RE, Gao Z, Pei Z, Ortiz-Zuazaga H, Pericchi LR, Garcia-Amado MA, Michelangeli F, Blaser MJ, Gordon JI, Domínguez-Bello MG. Bacterial community in the crop of the hoatzin, a neotropical folivorous flying bird. Applied and Environmental Microbiology. 74: 5905-12. PMID 18689523 DOI: 10.1128/Aem.00574-08 |
0.369 |
|
| 2008 |
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI. Evolution of mammals and their gut microbes. Science (New York, N.Y.). 320: 1647-51. PMID 18497261 DOI: 10.1126/Science.1155725 |
0.42 |
|
| 2008 |
Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Host-bacterial coevolution and the search for new drug targets. Current Opinion in Chemical Biology. 12: 109-14. PMID 18280814 DOI: 10.1016/J.Cbpa.2008.01.015 |
0.358 |
|
| 2008 |
Feazel LM, Spear JR, Berger AB, Harris JK, Frank DN, Ley RE, Pace NR. Eucaryotic diversity in a hypersaline microbial mat. Applied and Environmental Microbiology. 74: 329-32. PMID 17993566 DOI: 10.1128/Aem.01448-07 |
0.353 |
|
| 2007 |
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature. 449: 804-10. PMID 17943116 DOI: 10.1038/Nature06244 |
0.315 |
|
| 2007 |
Xu J, Mahowald MA, Ley RE, Lozupone CA, Hamady M, Martens EC, Henrissat B, Coutinho PM, Minx P, Latreille P, Cordum H, Van Brunt A, Kim K, Fulton RS, Fulton LA, et al. Evolution of symbiotic bacteria in the distal human intestine. Plos Biology. 5: e156. PMID 17579514 DOI: 10.1371/Journal.Pbio.0050156 |
0.411 |
|
| 2007 |
Ley RE, Knight R, Gordon JI. The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology. Environmental Microbiology. 9: 3-4. PMID 17227400 DOI: 10.1111/J.1462-2920.2006.01222_3.X |
0.349 |
|
| 2006 |
Rawls JF, Mahowald MA, Ley RE, Gordon JI. Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell. 127: 423-33. PMID 17055441 DOI: 10.1016/J.Cell.2006.08.043 |
0.382 |
|
| 2006 |
Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM, Maresca JA, Bryant DA, Sogin ML, Pace NR. Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Applied and Environmental Microbiology. 72: 3685-95. PMID 16672518 DOI: 10.1128/Aem.72.5.3685-3695.2006 |
0.416 |
|
| 2006 |
Ley RE, Peterson DA, Gordon JI. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 124: 837-48. PMID 16497592 DOI: 10.1016/J.Cell.2006.02.017 |
0.374 |
|
| 2006 |
Bäckhed F, Ley RE, Sonnenburg JL, Gordon JI. The human intestinal microbiota and its relationship to energy balance Scandinavian Journal of Food and Nutrition. 50: 121-123. DOI: 10.1080/17482970601066546 |
0.356 |
|
| 2005 |
Ley RE, Bäckhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. Obesity alters gut microbial ecology. Proceedings of the National Academy of Sciences of the United States of America. 102: 11070-5. PMID 16033867 DOI: 10.1073/Pnas.0504978102 |
0.371 |
|
| 2005 |
Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. Host-bacterial mutualism in the human intestine. Science (New York, N.Y.). 307: 1915-20. PMID 15790844 DOI: 10.1126/Science.1104816 |
0.396 |
|
| 2004 |
Cleveland CC, Townsend AR, Constance BC, Ley RE, Schmidt SK. Soil microbial dynamics in Costa Rica: Seasonal and biogeochemical constraints Biotropica. 36: 184-195. DOI: 10.1646/03115-Q1562 |
0.571 |
|
| 2004 |
Ley RE, Williams MW, Schmidt SK. Microbial population dynamics in an extreme environment: Controlling factors in talus soils at 3750 m in the Colorado Rocky Mountains Biogeochemistry. 68: 313-335. DOI: 10.1023/B:Biog.0000031032.58611.D0 |
0.542 |
|
| 2004 |
Schmidt SK, Lipson DA, Ley RE, Fisk MC, West AE. Impacts of chronic nitrogen additions vary seasonally and by microbial functional group in tundra soils Biogeochemistry. 69: 1-17. DOI: 10.1023/B:Biog.0000031028.53116.9B |
0.558 |
|
| 2003 |
Spear JR, Ley RE, Berger AB, Pace NR. Complexity in natural microbial ecosystems: the Guerrero Negro experience. The Biological Bulletin. 204: 168-73. PMID 12700148 DOI: 10.2307/1543553 |
0.372 |
|
| 2002 |
Ley RE, Schmidt SK. Fungal and bacterial responses to phenolic compounds and amino acids in high altitude barren soils Soil Biology and Biochemistry. 34: 989-995. DOI: 10.1016/S0038-0717(02)00032-9 |
0.546 |
|
| 2001 |
González G, Ley RE, Schmidt SK, Zou X, Seastedt TR. Soil ecological interactions: comparisons between tropical and subalpine forests. Oecologia. 128: 549-556. PMID 28547400 DOI: 10.1007/S004420100685 |
0.553 |
|
| 2001 |
Ley RE, Lipson DA, Schmidt S. Microbial Biomass Levels in Barren and Vegetated High Altitude Talus Soils Soil Science Society of America Journal. 65: 111-117. DOI: 10.2136/Sssaj2001.651111X |
0.545 |
|
| 2001 |
González G, Ley RE, Schmidt SK, Zou X, Seastedt TR. Soil ecological interactions: Comparisons between tropical and subalpine forests Oecologia. 128: 549-556. DOI: 10.1007/s004420100685 |
0.478 |
|
| 2001 |
Ley RE, Lipson DA, Schmidt SK. Division S-3 - Soil biology & biochemistry: Microbial biomass levels in barren and vegetated high altitude talus soils Soil Science Society of America Journal. 65: 111-117. |
0.491 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2019 |
Ley RE. Decision letter: A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols Elife. DOI: 10.7554/Elife.50845.Sa1 |
0.3 |
|
| 2010 |
Vijay-Kumar M, Aitken JD, Carvalho FA, Cullender TC, Mwangi S, Srinivasan S, Sitaraman SV, Knight R, Ley RE, Gewirtz AT. Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5. Science (New York, N.Y.). 328: 228-31. PMID 20203013 DOI: 10.1126/Science.1179721 |
0.296 |
|
| 2011 |
Knights D, Kuczynski J, Koren O, Ley RE, Field D, Knight R, DeSantis TZ, Kelley ST. Supervised classification of microbiota mitigates mislabeling errors. The Isme Journal. 5: 570-3. PMID 20927137 DOI: 10.1038/Ismej.2010.148 |
0.296 |
|
| 2016 |
Jackson M, Jeffery IB, Beaumont M, Bell JT, Clark AG, Ley RE, O'Toole PW, Spector TD, Steves CJ. Signatures of early frailty in the gut microbiota. Genome Medicine. 8: 8. PMID 26822992 DOI: 10.1186/S13073-016-0262-7 |
0.291 |
|
| 2014 |
Chassaing B, Ley RE, Gewirtz AT. Intestinal epithelial cell toll-like receptor 5 regulates the intestinal microbiota to prevent low-grade inflammation and metabolic syndrome in mice. Gastroenterology. 147: 1363-77.e17. PMID 25172014 DOI: 10.1053/J.Gastro.2014.08.033 |
0.291 |
|
| 2006 |
Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology: human gut microbes associated with obesity. Nature. 444: 1022-3. PMID 17183309 DOI: 10.1038/4441022A |
0.291 |
|
| 2016 |
Chassaing B, Koren O, Goodrich JK, Poole AC, Srinivasan S, Ley RE, Gewirtz AT. Corrigendum: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature. PMID 27144359 DOI: 10.1038/Nature18000 |
0.291 |
|
| 2017 |
Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, Devescovi G, Stillman K, Monteiro F, Rangel Alvarez B, Lundberg DS, Lu TY, Lebeis S, Jin Z, ... ... Ley RE, et al. Genomic features of bacterial adaptation to plants. Nature Genetics. PMID 29255260 DOI: 10.1038/S41588-017-0012-9 |
0.289 |
|
| 2006 |
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 444: 1027-31. PMID 17183312 DOI: 10.1038/Nature05414 |
0.286 |
|
| 2020 |
Walters WA, Reyes F, Soto GM, Reynolds ND, Fraser JA, Aviles R, Tribble DR, Irvin AP, Kelley-Loughnane N, Gutierrez RL, Riddle MS, Ley RE, Goodson MS, Simons MP. Epidemiology and associated microbiota changes in deployed military personnel at high risk of traveler's diarrhea. Plos One. 15: e0236703. PMID 32785284 DOI: 10.1371/Journal.Pone.0236703 |
0.284 |
|
| 2014 |
Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE. Conducting a microbiome study. Cell. 158: 250-62. PMID 25036628 DOI: 10.1016/J.Cell.2014.06.037 |
0.283 |
|
| 2020 |
Mineeva O, Rojas-Carulla M, Ley RE, Schölkopf B, Youngblut ND. DeepMAsED: Evaluating the quality of metagenomic assemblies. Bioinformatics (Oxford, England). PMID 32096824 DOI: 10.1093/Bioinformatics/Btaa124 |
0.281 |
|
| 2018 |
Walters WA, Jin Z, Youngblut N, Wallace JG, Sutter J, Zhang W, González-Peña A, Peiffer J, Koren O, Shi Q, Knight R, Glavina Del Rio T, Tringe SG, Buckler ES, Dangl JL, ... Ley RE, et al. Large-scale replicated field study of maize rhizosphere identifies heritable microbes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29941552 DOI: 10.1073/Pnas.1800918115 |
0.281 |
|
| 2018 |
Di Rienzi SC, Jacobson J, Kennedy EA, Bell ME, Shi Q, Waters JL, Lawrence P, Brenna JT, Britton RA, Walter J, Ley RE. Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids. Elife. 7. PMID 29580380 DOI: 10.7554/Elife.32581 |
0.281 |
|
| 2016 |
Giloteaux L, Goodrich JK, Walters WA, Levine SM, Ley RE, Hanson MR. Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome. Microbiome. 4: 30. PMID 27338587 DOI: 10.1186/S40168-016-0171-4 |
0.28 |
|
| 2001 |
Mack MC, D'Antonio CM, Ley RE. Alteration of ecosystem nitrogen dynamics by exotic plants: A case study of C4 grasses in Hawaii Ecological Applications. 11: 1323-1335. DOI: 10.1890/1051-0761(2001)011[1323:Aoendb]2.0.Co;2 |
0.278 |
|
| 2014 |
Ji Y, Sun S, Goodrich JK, Kim H, Poole AC, Duhamel GE, Ley RE, Qi L. Diet-induced alterations in gut microflora contribute to lethal pulmonary damage in TLR2/TLR4-deficient mice. Cell Reports. 8: 137-49. PMID 24953658 DOI: 10.1016/J.Celrep.2014.05.040 |
0.277 |
|
| 2017 |
Ley RE. To Which Extent Do Genetics Determine the Composition of the Gut Microbiome Latest Thinking. DOI: 10.21036/Ltpub10378 |
0.276 |
|
| 2010 |
Vijay-Kumar M, Aitken JD, Carvalho FA, Cullender TC, Mwangi SM, Srinivasan S, Sitaraman SV, Knight R, Ley RE, Gewirtz AT. 279 Altered Gut Microbiota in Toll-Like Receptor-5 (TLR5) Deficient Mice Results in Metabolic Syndrome Gastroenterology. 138: S-52. DOI: 10.1016/S0016-5085(10)60237-5 |
0.274 |
|
| 2020 |
Youngblut ND, de la Cuesta-Zuluaga J, Reischer GH, Dauser S, Schuster N, Walzer C, Stalder G, Farnleitner AH, Ley RE. Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity. Msystems. 5. PMID 33144315 DOI: 10.1128/mSystems.01045-20 |
0.272 |
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| 2023 |
Kennedy KM, de Goffau MC, Perez-Muñoz ME, Arrieta MC, Bäckhed F, Bork P, Braun T, Bushman FD, Dore J, de Vos WM, Earl AM, Eisen JA, Elovitz MA, Ganal-Vonarburg SC, Gänzle MG, ... ... Ley RE, et al. Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature. 613: 639-649. PMID 36697862 DOI: 10.1038/s41586-022-05546-8 |
0.27 |
|
| 2021 |
Youngblut ND, Reischer GH, Dauser S, Maisch S, Walzer C, Stalder G, Farnleitner AH, Ley RE. Vertebrate host phylogeny influences gut archaeal diversity. Nature Microbiology. 6: 1443-1454. PMID 34702978 DOI: 10.1038/s41564-021-00980-2 |
0.269 |
|
| 2014 |
Ravel J, Blaser MJ, Braun J, Brown E, Bushman FD, Chang EB, Davies J, Dewey KG, Dinan T, Dominguez-Bello M, Erdman SE, Finlay BB, Garrett WS, Huffnagle GB, Huttenhower C, ... ... Ley RE, et al. Human microbiome science: Vision for the future, Bethesda, MD, July 24 to 26, 2013 Microbiome. 2. DOI: 10.1186/2049-2618-2-16 |
0.268 |
|
| 2020 |
Suzuki TA, Ley RE. The role of the microbiota in human genetic adaptation. Science (New York, N.Y.). 370. PMID 33273073 DOI: 10.1126/science.aaz6827 |
0.264 |
|
| 2012 |
Carvalho FA, Nalbantoglu I, Ortega-Fernandez S, Aitken JD, Su Y, Koren O, Walters WA, Knight R, Ley RE, Vijay-Kumar M, Gewirtz AT. Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis. Gut. 61: 373-84. PMID 21646247 DOI: 10.1136/Gut.2011.240556 |
0.263 |
|
| 2015 |
Beaumont M, Goodridge K, Bell J, Clark A, Spector T, Ley R, Steves C. 57FRAILTY AND THE MICROBIOME: A TWIN STUDY Age and Ageing. 44: ii18.1-ii18. DOI: 10.1093/Ageing/Afv112.01 |
0.262 |
|
| 2015 |
Sun S, Lourie R, Cohen SB, Ji Y, Goodrich JK, Poole AC, Ley RE, Denkers EY, McGuckin MA, Long Q, Duhamel GE, Simpson KW, Qi L. Epithelial Sel1L is required for the maintenance of intestinal homeostasis. Molecular Biology of the Cell. PMID 26631554 DOI: 10.1091/Mbc.E15-10-0724 |
0.261 |
|
| 2012 |
Brook SM, van Coeverden de Groot P, Scott C, Boag P, Long B, Ley RE, Reischer GH, Williams AC, Mahood SP, Hien TM, Polet G, Cox N, Hai BT. Integrated and novel survey methods for rhinoceros populations confirm the extinction of Rhinoceros sondaicus annamiticus from Vietnam Biological Conservation. 155: 59-67. DOI: 10.1016/J.Biocon.2012.06.008 |
0.261 |
|
| 2017 |
Guss JD, Horsfield MW, Fontenele FF, Sandoval TN, Luna M, Apoorva F, Lima SF, Bicalho RC, Singh A, Ley RE, van der Meulen MC, Goldring SR, Hernandez CJ. Alterations to the Gut Microbiome Impair Bone Strength and Tissue Material Properties. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 28244143 DOI: 10.1002/Jbmr.3114 |
0.26 |
|
| 2012 |
Carvalho F, Koren O, Chassaing B, Darfeuille-Michaud A, Knight R, Ley R, Gewirtz A. Colitis in TLR5-deficiency Mice: Role of the Microbiota Inflammatory Bowel Diseases. 18: S113-S114. DOI: 10.1097/00054725-201212001-00292 |
0.255 |
|
| 2011 |
Ran-Ressler RR, Khailova L, Arganbright KM, Adkins-Rieck CK, Jouni ZE, Koren O, Ley RE, Brenna JT, Dvorak B. Branched chain fatty acids reduce the incidence of necrotizing enterocolitis and alter gastrointestinal microbial ecology in a neonatal rat model. Plos One. 6: e29032. PMID 22194981 DOI: 10.1371/Journal.Pone.0029032 |
0.255 |
|
| 2015 |
Barrios C, Beaumont M, Pallister T, Villar J, Goodrich JK, Clark A, Pascual J, Ley RE, Spector TD, Bell JT, Menni C. Gut-Microbiota-Metabolite Axis in Early Renal Function Decline. Plos One. 10: e0134311. PMID 26241311 DOI: 10.1371/Journal.Pone.0134311 |
0.254 |
|
| 2015 |
Jackson MA, Goodrich JK, Maxan ME, Freedberg DE, Abrams JA, Poole AC, Sutter JL, Welter D, Ley RE, Bell JT, Spector TD, Steves CJ. Proton pump inhibitors alter the composition of the gut microbiota. Gut. PMID 26719299 DOI: 10.1136/Gutjnl-2015-310861 |
0.252 |
|
| 2015 |
Ley RE. The gene-microbe link. Nature. 518: S7. PMID 25715280 DOI: 10.1038/Scientificamerican0315-S7 |
0.251 |
|
| 2015 |
McGavigan AK, Garibay D, Henseler ZM, Chen J, Bettaieb A, Haj FG, Ley RE, Chouinard ML, Cummings BP. TGR5 contributes to glucoregulatory improvements after vertical sleeve gastrectomy in mice. Gut. PMID 26511794 DOI: 10.1136/Gutjnl-2015-309871 |
0.247 |
|
| 2022 |
Suzuki TA, Fitzstevens JL, Schmidt VT, Enav H, Huus KE, Mbong Ngwese M, Grießhammer A, Pfleiderer A, Adegbite BR, Zinsou JF, Esen M, Velavan TP, Adegnika AA, Song LH, Spector TD, ... ... Ley RE, et al. Codiversification of gut microbiota with humans. Science (New York, N.Y.). 377: 1328-1332. PMID 36108023 DOI: 10.1126/science.abm7759 |
0.244 |
|
| 2013 |
Chassaing B, Koren O, Carvalho FA, Ley RE, Gewirtz AT. Tu2024 AIEC Instigates Chronic Colitis by Altering Microbiota Composition and Its Inherent Pro-Inflammatory Potential Gastroenterology. 144: S-907. DOI: 10.1016/S0016-5085(13)63380-6 |
0.241 |
|
| 2017 |
McGavigan AK, Henseler ZM, Garibay D, Butler SD, Jayasinghe S, Ley RE, Davisson RL, Cummings BP. Vertical sleeve gastrectomy reduces blood pressure and hypothalamic endoplasmic reticulum stress in mice. Disease Models & Mechanisms. PMID 28093508 DOI: 10.1242/Dmm.027474 |
0.237 |
|
| 2023 |
Akbuğa-Schön T, Suzuki TA, Jakob D, Vu DL, Waters JL, Ley RE. The keystone gut species boosts gut microbial biomass and voluntary physical activity in mice. Mbio. e0283623. PMID 38132571 DOI: 10.1128/mbio.02836-23 |
0.235 |
|
| 2018 |
Rienzi SCD, Jacobson J, Kennedy EA, Bell ME, Shi Q, Waters JL, Lawrence P, Brenna JT, Britton RA, Walter J, Ley RE. Author response: Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids Elife. DOI: 10.7554/Elife.32581.030 |
0.234 |
|
| 2020 |
Clasen SJ, Ley RE. Iron Deficiency Causes Wrinkles in Host-Commensal Relationships. Cell Metabolism. 31: 8-10. PMID 31951569 DOI: 10.1016/J.Cmet.2019.12.003 |
0.233 |
|
| 1998 |
Ley RE, D'Antonio CM. Exotic grass invasion alters potential rates of N fixation in Hawaiian woodlands. Oecologia. 113: 179-187. PMID 28308195 DOI: 10.1007/S004420050366 |
0.227 |
|
| 2022 |
Youngblut ND, de la Cuesta-Zuluaga J, Ley RE. Incorporating genome-based phylogeny and functional similarity into diversity assessments helps to resolve a global collection of human gut metagenomes. Environmental Microbiology. PMID 35049120 DOI: 10.1111/1462-2920.15910 |
0.218 |
|
| 2019 |
Knight R, Ley RE, Raes J, Grice EA. Expanding the scope and scale of microbiome research. Genome Biology. 20: 191. PMID 31488207 DOI: 10.1186/S13059-019-1804-2 |
0.211 |
|
| 2003 |
Jakosky BM, Nealson KH, Bakermans C, Ley RE, Mellon MT. Subfreezing activity of microorganisms and the potential habitability of Mars' polar regions. Astrobiology. 3: 343-50. PMID 14577883 DOI: 10.1089/153110703769016433 |
0.207 |
|
| 2016 |
Poole AC, Pischel L, Ley C, Suh G, Goodrich JK, Haggerty TD, Ley RE, Parsonnet J. Crossover Control Study of the Effect of Personal Care Products Containing Triclosan on the Microbiome. Msphere. 1. PMID 27303746 DOI: 10.1128/mSphere.00056-15 |
0.195 |
|
| 2021 |
Youngblut ND, Ley RE. Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets. Peerj. 9: e12198. PMID 34616633 DOI: 10.7717/peerj.12198 |
0.192 |
|
| 2009 |
Ley RE, Gordon JI. The Human Intestinal Microbiota and Microbiome Textbook of Gastroenterology, Fifth Edition. 1: 635-644. DOI: 10.1002/9781444303254.ch25 |
0.187 |
|
| 2019 |
Alves da Silva AV, de Castro Oliveira SB, Di Rienzi SC, Brown-Steinke K, Dehan LM, Rood JK, Carreira VS, Le H, Maier EA, Betz KJ, Aihara E, Ley RE, Preidis GA, Shen L, Moore SR. Murine Methyl Donor Deficiency Impairs Early Growth in Association with Dysmorphic Small Intestinal Crypts and Reduced Gut Microbial Community Diversity. Current Developments in Nutrition. 3: nzy070. PMID 30643852 DOI: 10.1093/cdn/nzy070 |
0.185 |
|
| 2021 |
Chassaing B, Compher C, Bonhomme B, Liu Q, Tian Y, Walters W, Nessel L, Delaroque C, Hao F, Gershuni V, Chau L, Ni J, Bewtra M, Albenberg L, Bretin A, ... ... Ley RE, et al. Randomized controlled-feeding study of dietary emulsifier carboxymethylcellulose reveals detrimental impacts on the gut microbiota and metabolome. Gastroenterology. PMID 34774538 DOI: 10.1053/j.gastro.2021.11.006 |
0.182 |
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| 2024 |
Dilmore AH, Kuplicki R, McDonald D, Kumar M, Estaki M, Youngblut N, Tyakht A, Ackermann G, Blach C, MahmoudianDehkordi S, Dunlop BW, Bhattacharyya S, Guinjoan S, Mandaviya P, Ley RE, et al. Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression. Biorxiv : the Preprint Server For Biology. PMID 38562901 DOI: 10.1101/2024.03.19.585820 |
0.179 |
|
| 2020 |
Schmidt V, Enav H, Spector TD, Youngblut ND, Ley RE. Strain-Level Analysis of spp. from Gut Microbiomes of Adults with Differing Lactase Persistence Genotypes. Msystems. 5. PMID 32994293 DOI: 10.1128/mSystems.00911-20 |
0.177 |
|
| 2009 |
Ley R. In Person: Breaking All the Rules Science. DOI: 10.1126/Science.Caredit.A0900069 |
0.175 |
|
| 2022 |
Suzuki TA, Ley RE. Microbes set the (woodrat) menu: Host genetics control diet-specific gut microbes. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34969676 DOI: 10.1073/pnas.2120125118 |
0.171 |
|
| 2021 |
Du X, Ley R, Buck AH. MicroRNAs and extracellular vesicles in the gut: new host modulators of the microbiome? Microlife. 2: uqab010. PMID 37223256 DOI: 10.1093/femsml/uqab010 |
0.169 |
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| 2021 |
Liu X, Sutter JL, de la Cuesta-Zuluaga J, Waters JL, Youngblut ND, Ley RE. Reclassification of as comb. nov. based on whole genome analysis. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 33881979 DOI: 10.1099/ijsem.0.004774 |
0.169 |
|
| 2023 |
Marsh JW, Kirk C, Ley RE. Toward Microbiome Engineering: Expanding the Repertoire of Genetically Tractable Members of the Human Gut Microbiome. Annual Review of Microbiology. PMID 37339736 DOI: 10.1146/annurev-micro-032421-112304 |
0.161 |
|
| 2008 |
Ley RE. Evolution of mammals and their gut microbes (Science (1647)) Science. 322: 1188. |
0.16 |
|
| 2022 |
Heaver SL, Le HH, Tang P, Baslé A, Mirretta Barone C, Vu DL, Waters JL, Marles-Wright J, Johnson EL, Campopiano DJ, Ley RE. Characterization of inositol lipid metabolism in gut-associated Bacteroidetes. Nature Microbiology. PMID 35725777 DOI: 10.1038/s41564-022-01152-6 |
0.157 |
|
| 2021 |
Huus KE, Ley RE. Blowing Hot and Cold: Body Temperature and the Microbiome. Msystems. 6: e0070721. PMID 34581596 DOI: 10.1128/mSystems.00707-21 |
0.151 |
|
| 2023 |
Mineeva O, Danciu D, Schölkopf B, Ley RE, Rätsch G, Youngblut ND. ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning. Plos Computational Biology. 19: e1011001. PMID 37126495 DOI: 10.1371/journal.pcbi.1011001 |
0.15 |
|
| 2022 |
Ruaud A, Pfister N, Ley RE, Youngblut ND. Interpreting tree ensemble machine learning models with endoR. Plos Computational Biology. 18: e1010714. PMID 36516158 DOI: 10.1371/journal.pcbi.1010714 |
0.148 |
|
| 2023 |
de la Cuesta-Zuluaga J, Huus KE, Youngblut ND, Escobar JS, Ley RE. Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy. Gut Microbes. 15: 2246634. PMID 37680093 DOI: 10.1080/19490976.2023.2246634 |
0.146 |
|
| 2023 |
Clasen SJ, Bell MEW, Borbón A, Lee DH, Henseler ZM, de la Cuesta-Zuluaga J, Parys K, Zou J, Wang Y, Altmannova V, Youngblut ND, Weir JR, Gewirtz AT, Belkhadir Y, Ley RE. Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science Immunology. 8: eabq7001. PMID 36608151 DOI: 10.1126/sciimmunol.abq7001 |
0.143 |
|
| 2022 |
Enav H, Bäckhed F, Ley RE. The developing infant gut microbiome: A strain-level view. Cell Host & Microbe. 30: 627-638. PMID 35550666 DOI: 10.1016/j.chom.2022.04.009 |
0.14 |
|
| 2023 |
Walters WA, Granados AC, Ley C, Federman S, Stryke D, Santos Y, Haggerty T, Sotomayor-Gonzalez A, Servellita V, Ley RE, Parsonnet J, Chiu CY. Longitudinal comparison of the developing gut virome in infants and their mothers. Cell Host & Microbe. 31: 187-198.e3. PMID 36758519 DOI: 10.1016/j.chom.2023.01.003 |
0.138 |
|
| 2021 |
Welter DK, Ruaud A, Henseler ZM, De Jong HN, van Coeverden de Groot P, Michaux J, Gormezano L, Waters JL, Youngblut ND, Ley RE. Free-Living, Psychrotrophic Bacteria of the Genus Are Descendants of Pathobionts. Msystems. 6. PMID 33850039 DOI: 10.1128/mSystems.00258-21 |
0.136 |
|
| 2019 |
de la Cuesta-Zuluaga J, Kelley ST, Chen Y, Escobar JS, Mueller NT, Ley RE, McDonald D, Huang S, Swafford AD, Knight R, Thackray VG. Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults. Msystems. 4. PMID 31120032 DOI: 10.1128/mSystems.00261-19 |
0.129 |
|
| 2019 |
de la Cuesta-Zuluaga J, Kelley ST, Chen Y, Escobar JS, Mueller NT, Ley RE, McDonald D, Huang S, Swafford AD, Knight R, Thackray VG. Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults. Msystems. 4. PMID 31098397 DOI: 10.1128/mSystems.00261-19 |
0.129 |
|
| 2023 |
Daniel N, Wu GD, Walters W, Compher C, Ni J, Delaroque C, Albenberg L, Ley RE, Patterson AD, Lewis JD, Gewirtz AT, Chassaing B. Human intestinal microbiome determines individualized inflammatory response to dietary emulsifier carboxymethylcellulose consumption. Cellular and Molecular Gastroenterology and Hepatology. PMID 37931789 DOI: 10.1016/j.jcmgh.2023.11.001 |
0.129 |
|
| 2019 |
Janzon A, Goodrich JK, Koren O, Waters JL, Ley RE. Interactions between the Gut Microbiome and Mucosal Immunoglobulins A, M, and G in the Developing Infant Gut. Msystems. 4. PMID 31771976 DOI: 10.1128/mSystems.00612-19 |
0.121 |
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| 2024 |
Maier L, Stein-Thoeringer C, Ley RE, Brötz-Oesterhelt H, Link H, Ziemert N, Wagner S, Peschel A. Integrating research on bacterial pathogens and commensals to fight infections-an ecological perspective. The Lancet. Microbe. PMID 38608681 DOI: 10.1016/S2666-5247(24)00049-1 |
0.12 |
|
| 2021 |
Rienzi SCD, Johnson EL, Waters JL, Kennedy EA, Jacobson J, Lawrence P, Wang DH, Worgall TS, Brenna JT, Ley RE. The microbiome affects liver sphingolipids and plasma fatty acids in a murine model of the Western diet based on soybean oil: Hepatic sphingolipids and plasma FAs are altered by gut microbes. The Journal of Nutritional Biochemistry. 108808. PMID 34186211 DOI: 10.1016/j.jnutbio.2021.108808 |
0.116 |
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| 2023 |
Casini I, McCubbin T, Esquivel-Elizondo S, Luque GG, Evseeva D, Fink C, Beblawy S, Youngblut ND, Aristilde L, Huson DH, Dräger A, Ley RE, Marcellin E, Angenent LT, Molitor B. An integrated systems biology approach reveals differences in formate metabolism in the genus . Iscience. 26: 108016. PMID 37854702 DOI: 10.1016/j.isci.2023.108016 |
0.108 |
|
| 2022 |
Marsh JW, Ley RE. Microbiome engineering: Taming the untractable. Cell. PMID 35081334 DOI: 10.1016/j.cell.2021.12.034 |
0.106 |
|
| 2022 |
Ley R. The human microbiome: there is much left to do. Nature. 606: 435. PMID 35705822 DOI: 10.1038/d41586-022-01610-5 |
0.09 |
|
| 2023 |
Bretin A, Zou J, San Yeoh B, Ngo VL, Winer S, Winer DA, Reddivari L, Pellizzon M, Walters WA, Patterson AD, Ley R, Chassaing B, Vijay-Kumar M, Gewirtz AT. PSYLLIUM FIBER PROTECTS AGAINST COLITIS VIA ACTIVATION OF BILE ACID SENSOR FXR. Cellular and Molecular Gastroenterology and Hepatology. PMID 36828279 DOI: 10.1016/j.jcmgh.2023.02.007 |
0.069 |
|
| 2023 |
Walters W, Ley C, Hastie T, Ley R, Parsonnet J. Use of a modified Michaelis-Menten equation to estimate growth from birth to 3 years in healthy full term babies. Research Square. PMID 36711501 DOI: 10.21203/rs.3.rs-2375831/v1 |
0.063 |
|
| 1998 |
Ley RE, D'Antonio CM. Exotic grass invasion alters potential rates of N fixation in Hawaiian woodlands Oecologia. 113: 179-187. DOI: 10.1007/s004420050366 |
0.052 |
|
| 2024 |
Walters WA, Ley C, Hastie T, Ley RE, Parsonnet J. A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the USA. Bmc Medical Research Methodology. 24: 27. PMID 38302887 DOI: 10.1186/s12874-024-02145-1 |
0.043 |
|
| 2023 |
Pinto Y, Frishman S, Turjeman S, Eshel A, Nuriel-Ohayon M, Shrossel O, Ziv O, Walters W, Parsonnet J, Ley C, Johnson EL, Kumar K, Schweitzer R, Khatib S, Magzal F, ... ... Ley RE, et al. Gestational diabetes is driven by microbiota-induced inflammation months before diagnosis. Gut. PMID 36627187 DOI: 10.1136/gutjnl-2022-328406 |
0.038 |
|
| 2016 |
Pischel L, Poole AC, Ley C, Suh G, Goodrich JK, Haggerty TD, Ley RE, Parsonnet J. Reply to "Triclocarban and Health: the Jury Is Still Out". Msphere. 1. PMID 27841373 DOI: 10.1128/mSphere.00255-16 |
0.017 |
|
| 2013 |
Colombo D, Rovetta D, Sandoval Curiel E, Ley RE, Wang W, Liang C. 3D seismic-gravity simultaneous joint inversion for near surface velocity estimation 75th European Association of Geoscientists and Engineers Conference and Exhibition 2013 Incorporating Spe Europec 2013: Changing Frontiers. 4943-4947. |
0.01 |
|
| 1994 |
Vertruyen MF, Burgeon MA, Dachy BS, Ley RE. Sensory recovery after microsurgical repair of digital nerves. Acta Chirurgica Belgica. 94: 325-8. PMID 7846993 |
0.01 |
|
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