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Yuxing Peng, Ph.D. - Publications

Affiliations: 
2014 Chemistry University of Chicago, Chicago, IL 
Area:
theoretical and computer simulation studies of biomolecular and liquid state phenomena
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Peng Y, Pak AJ, Durumeric AEP, Sahrmann PG, Mani S, Jin J, Loose TD, Beiter J, Voth GA. OpenMSCG: A Software Tool for Bottom-Up Coarse-Graining. The Journal of Physical Chemistry. B. 127: 8537-8550. PMID 37791670 DOI: 10.1021/acs.jpcb.3c04473  0.567
2018 Nelson JG, Peng Y, Silverstein DW, Swanson JMJ. Correction to Multiscale Reactive Molecular Dynamics for Absolute pKa Predictions and Amino Acid Deprotonation. Journal of Chemical Theory and Computation. PMID 29392951 DOI: 10.1021/Acs.Jctc.8B00044  0.559
2016 Liang R, Swanson JM, Peng Y, Wikström M, Voth GA. Multiscale simulations reveal key features of the proton-pumping mechanism in cytochrome c oxidase. Proceedings of the National Academy of Sciences of the United States of America. PMID 27339133 DOI: 10.1073/Pnas.1601982113  0.47
2016 Fei F, Yang H, Peng Y, Wang P, Wang S, Zhao Y, Huang J, Yu X, Feng S, Sun R, Yang N, Wang H, Aa J, Wang G. Sensitive analysis and pharmacokinetic study of the isomers paeoniflorin and albiflorin after oral administration of Total Glucosides Of White Paeony Capsule in rats. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1022: 30-37. PMID 27070118 DOI: 10.1016/j.jchromb.2016.04.005  0.377
2016 Duan S, Song M, He J, Zhou N, Zhou S, Zhao J, Fang Y, Peng Y, Huang X, Luo G, Lai C, Yu X, Zhang Z, Xie Y, Zhao Y, et al. Folate-modified chitosan nanoparticles coated interferon-inducible protein-10 gene enhance cytotoxic t lymphocytes' responses to hepatocellular carcinoma Journal of Biomedical Nanotechnology. 12: 700-709. DOI: 10.1166/jbn.2016.2216  0.351
2015 Cao Z, Peng Y, Voth GA. Ion Transport through Ultrathin Electrolyte under Applied Voltages. The Journal of Physical Chemistry. B. 119: 7516-21. PMID 25556845 DOI: 10.1021/Jp511260V  0.413
2015 Cao Z, Kumar R, Peng Y, Voth GA. Hydrated Proton Structure and Diffusion at Platinum Surfaces Journal of Physical Chemistry C. 119: 14675-14682. DOI: 10.1021/Jp5129244  0.448
2014 Peng Y, Cao Z, Zhou R, Voth GA. Path Integral Coarse-Graining Replica Exchange Method for Enhanced Sampling. Journal of Chemical Theory and Computation. 10: 3634-40. PMID 26588508 DOI: 10.1021/Ct500447R  0.442
2014 Peng Y, Swanson JM, Kang SG, Zhou R, Voth GA. Hydrated Excess Protons Can Create Their Own Water Wires. The Journal of Physical Chemistry. B. PMID 25369445 DOI: 10.1021/Jp5095118  0.466
2014 Nelson JG, Peng Y, Silverstein DW, Swanson JM. Multiscale Reactive Molecular Dynamics for Absolute pK a Predictions and Amino Acid Deprotonation. Journal of Chemical Theory and Computation. 10: 2729-2737. PMID 25061442 DOI: 10.1021/Ct500250F  0.594
2014 Cao Z, Kumar R, Peng Y, Voth GA. Proton transport under external applied voltage. The Journal of Physical Chemistry. B. 118: 8090-8. PMID 24720738 DOI: 10.1021/Jp501130M  0.452
2014 Peng Y, Cao Z, Zhou R, Voth GA. Path integral coarse-graining replica exchange method for enhanced sampling Journal of Chemical Theory and Computation. 10: 3634-3640. DOI: 10.1021/ct500447r  0.339
2012 Yamashita T, Peng Y, Knight C, Voth GA. Computationally Efficient Multiconfigurational Reactive Molecular Dynamics. Journal of Chemical Theory and Computation. 8: 4863-4875. PMID 25100924 DOI: 10.1021/Ct3006437  0.482
2012 Peng Y, Voth GA. Expanding the view of proton pumping in cytochrome c oxidase through computer simulation. Biochimica Et Biophysica Acta. 1817: 518-25. PMID 22178790 DOI: 10.1016/J.Bbabio.2011.11.017  0.474
2012 Peng Y, Crosby L, Knight C, Voth GA, Blood P. Extending parallel scalability of LAMMPS and multiscale reactive molecular simulations Acm International Conference Proceeding Series. DOI: 10.1145/2335755.2335833  0.369
2010 Cao Z, Peng Y, Yan T, Li S, Li A, Voth GA. Mechanism of fast proton transport along one-dimensional water chains confined in carbon nanotubes. Journal of the American Chemical Society. 132: 11395-7. PMID 20669967 DOI: 10.1021/Ja1046704  0.466
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