| Year |
Citation |
Score |
| 2018 |
Spagnolo F, Cristofari P, Tatonetti NP, Ginzburg LR, Dykhuizen DE. Pathogen population structure can explain hospital outbreaks. The Isme Journal. PMID 30046167 DOI: 10.1038/S41396-018-0235-5 |
0.554 |
|
| 2018 |
Warsi OM, Andersson DI, Dykhuizen DE. Different adaptive strategies in E. coli populations evolving under macronutrient limitation and metal ion limitation. Bmc Evolutionary Biology. 18: 72. PMID 29776341 DOI: 10.1186/S12862-018-1191-4 |
0.739 |
|
| 2017 |
Warsi OM, Dykhuizen DE. Evolutionary implications of Liebig's law of the minimum: Selection under low concentrations of two nonsubstitutable nutrients. Ecology and Evolution. 7: 5296-5309. PMID 28770068 DOI: 10.1002/Ece3.3096 |
0.74 |
|
| 2016 |
Dykhuizen D. Thoughts Toward a Theory of Natural Selection: The Importance of Microbial Experimental Evolution. Cold Spring Harbor Perspectives in Biology. PMID 26747663 DOI: 10.1101/cshperspect.a018044 |
0.414 |
|
| 2015 |
Spagnolo F, Rinaldi C, Sajorda DR, Dykhuizen DE. Evolution of Resistance to Continuously Increasing Streptomycin Concentrations in Populations of Escherichia coli. Antimicrobial Agents and Chemotherapy. 60: 1336-42. PMID 26666944 DOI: 10.1128/Aac.01359-15 |
0.552 |
|
| 2014 |
Monzón J, Kays R, Dykhuizen DE. Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs. Molecular Ecology. 23: 182-97. PMID 24148003 DOI: 10.1111/Mec.12570 |
0.718 |
|
| 2012 |
Weissman SJ, Johnson JR, Tchesnokova V, Billig M, Dykhuizen D, Riddell K, Rogers P, Qin X, Butler-Wu S, Cookson BT, Fang FC, Scholes D, Chattopadhyay S, Sokurenko E. High-resolution two-locus clonal typing of extraintestinal pathogenic Escherichia coli. Applied and Environmental Microbiology. 78: 1353-60. PMID 22226951 DOI: 10.1128/Aem.06663-11 |
0.352 |
|
| 2010 |
Stoebel DM, Dykhuizen DE. Waste and yet want not. Molecular Cell. 38: 625-6. PMID 20541995 DOI: 10.1016/J.Molcel.2010.05.028 |
0.695 |
|
| 2010 |
Brisson D, Vandermause MF, Meece JK, Reed KD, Dykhuizen DE. Evolution of northeastern and midwestern Borrelia burgdorferi, United States. Emerging Infectious Diseases. 16: 911-7. PMID 20507740 DOI: 10.3201/Eid1606.090329 |
0.512 |
|
| 2009 |
Zhong S, Miller SP, Dykhuizen DE, Dean AM. Transcription, translation, and the evolution of specialists and generalists. Molecular Biology and Evolution. 26: 2661-78. PMID 19706726 DOI: 10.1093/Molbev/Msp187 |
0.515 |
|
| 2009 |
Chattopadhyay S, Paranjpye RN, Dykhuizen DE, Sokurenko EV, Strom MS. Comparative evolutionary analysis of the major structural subunit of Vibrio vulnificus type IV pili. Molecular Biology and Evolution. 26: 2185-96. PMID 19556347 DOI: 10.1093/molbev/msp124 |
0.303 |
|
| 2009 |
Dykhuizen DE, Dean AM. Experimental evolution from the bottom up Experimental Evolution: Concepts, Methods, and Applications of Selection Experiments. 86-106. |
0.475 |
|
| 2008 |
Dykhuizen DE, Brisson D, Sandigursky S, Wormser GP, Nowakowski J, Nadelman RB, Schwartz I. The propensity of different Borrelia burgdorferi sensu stricto genotypes to cause disseminated infections in humans. The American Journal of Tropical Medicine and Hygiene. 78: 806-10. PMID 18458317 DOI: 10.4269/Ajtmh.2008.78.806 |
0.508 |
|
| 2008 |
Stoebel DM, Dean AM, Dykhuizen DE. The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics. 178: 1653-60. PMID 18245823 DOI: 10.1534/Genetics.107.085399 |
0.756 |
|
| 2008 |
Brisson D, Dykhuizen DE, Ostfeld RS. Conspicuous impacts of inconspicuous hosts on the Lyme disease epidemic. Proceedings. Biological Sciences / the Royal Society. 275: 227-35. PMID 18029304 DOI: 10.1098/Rspb.2007.1208 |
0.494 |
|
| 2007 |
Chattopadhyay S, Feldgarden M, Weissman SJ, Dykhuizen DE, van Belle G, Sokurenko EV. Haplotype diversity in "source-sink" dynamics of Escherichia coli urovirulence. Journal of Molecular Evolution. 64: 204-14. PMID 17177088 DOI: 10.1007/S00239-006-0063-5 |
0.69 |
|
| 2006 |
Brisson D, Dykhuizen DE. A modest model explains the distribution and abundance of Borrelia burgdorferi strains. The American Journal of Tropical Medicine and Hygiene. 74: 615-22. PMID 16606995 DOI: 10.4269/Ajtmh.2006.74.615 |
0.534 |
|
| 2006 |
Weissman SJ, Chattopadhyay S, Aprikian P, Obata-Yasuoka M, Yarova-Yarovaya Y, Stapleton A, Ba-Thein W, Dykhuizen D, Johnson JR, Sokurenko EV. Clonal analysis reveals high rate of structural mutations in fimbrial adhesins of extraintestinal pathogenic Escherichia coli. Molecular Microbiology. 59: 975-88. PMID 16420365 DOI: 10.1111/j.1365-2958.2005.04985.x |
0.406 |
|
| 2004 |
Brisson D, Dykhuizen DE. ospC diversity in Borrelia burgdorferi: different hosts are different niches. Genetics. 168: 713-22. PMID 15514047 DOI: 10.1534/Genetics.104.028738 |
0.583 |
|
| 2004 |
Dykhuizen DE, Dean AM. Evolution of specialists in an experimental microcosm. Genetics. 167: 2015-26. PMID 15342537 DOI: 10.1534/Genetics.103.025205 |
0.56 |
|
| 2004 |
Zhong S, Khodursky A, Dykhuizen DE, Dean AM. Evolutionary genomics of ecological specialization. Proceedings of the National Academy of Sciences of the United States of America. 101: 11719-24. PMID 15289609 DOI: 10.1073/Pnas.0404397101 |
0.512 |
|
| 2004 |
Sokurenko EV, Feldgarden M, Trintchina E, Weissman SJ, Avagyan S, Chattopadhyay S, Johnson JR, Dykhuizen DE. Selection footprint in the FimH adhesin shows pathoadaptive niche differentiation in Escherichia coli. Molecular Biology and Evolution. 21: 1373-83. PMID 15044596 DOI: 10.1093/Molbev/Msh136 |
0.679 |
|
| 2003 |
Feldgarden M, Stoebel DM, Brisson D, Dykhuizen DE. SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA. Ecology. 84: 1679-1687. PMID 21423836 DOI: 10.1890/0012-9658(2003)084[1679:Sdmmse]2.0.Co;2 |
0.761 |
|
| 2002 |
Lunzer M, Natarajan A, Dykhuizen DE, Dean AM. Enzyme kinetics, substitutable resources and competition: from biochemistry to frequency-dependent selection in lac. Genetics. 162: 485-99. PMID 12242256 |
0.553 |
|
| 2002 |
Qiu WG, Dykhuizen DE, Acosta MS, Luft BJ. Geographic uniformity of the Lyme disease spirochete (Borrelia burgdorferi) and its shared history with tick vector (Ixodes scapularis) in the Northeastern United States. Genetics. 160: 833-49. PMID 11901105 |
0.488 |
|
| 2001 |
Wang IN, Dykhuizen DE. Variation of enzyme activities at a branched pathway involved in the utilization of gluconate in Escherichia coli. Evolution; International Journal of Organic Evolution. 55: 897-908. PMID 11430650 DOI: 10.1554/0014-3820(2001)055[0897:Voeaaa]2.0.Co;2 |
0.549 |
|
| 2001 |
Baranton G, Seinost G, Theodore G, Postic D, Dykhuizen D. Distinct levels of genetic diversity of Borrelia burgdorferi are associated with different aspects of pathogenicity. Research in Microbiology. 152: 149-56. PMID 11316368 DOI: 10.1016/S0923-2508(01)01186-X |
0.301 |
|
| 2000 |
Rannala B, Qiu WG, Dykhuizen DE. Methods for estimating gene frequencies and detecting selection in bacterial populations. Genetics. 155: 499-508. PMID 10835376 |
0.478 |
|
| 1999 |
Tuomanen E, Sokurenko EV, Dykhuizen DE. Divergence in the background: Hard to measure but the key to being the best of the best Trends in Microbiology. 7: 271-272. PMID 10390635 DOI: 10.1016/S0966-842X(99)01528-0 |
0.309 |
|
| 1999 |
Seinost G, Dykhuizen DE, Dattwyler RJ, Golde WT, Dunn JJ, Wang IN, Wormser GP, Schriefer ME, Luft BJ. Four clones of Borrelia burgdorferi sensu stricto cause invasive infection in humans. Infection and Immunity. 67: 3518-24. PMID 10377134 DOI: 10.1128/Iai.67.7.3518-3524.1999 |
0.512 |
|
| 1999 |
Wang IN, Dykhuizen DE, Qiu W, Dunn JJ, Bosler EM, Luft BJ. Genetic diversity of ospC in a local population of Borrelia burgdorferi sensu stricto. Genetics. 151: 15-30. PMID 9872945 |
0.648 |
|
| 1998 |
Golde WT, Robinson-Dunn B, Stobierski MG, Dykhuizen D, Wang IN, Carlson V, Stiefel H, Shiflett S, Campbell GL. Culture-confirmed reinfection of a person with different strains of Borrelia burgdorferi sensu stricto. Journal of Clinical Microbiology. 36: 1015-9. PMID 9542928 DOI: 10.1128/Jcm.36.4.1015-1019.1998 |
0.572 |
|
| 1997 |
Qiu WG, Bosler EM, Campbell JR, Ugine GD, Wang IN, Luft BJ, Dykhuizen DE. A population genetic study of Borrelia burgdorferi sensu stricto from eastern Long Island, New York, suggested frequency-dependent selection, gene flow and host adaptation. Hereditas. 127: 203-16. PMID 9474903 DOI: 10.1111/J.1601-5223.1997.00203.X |
0.673 |
|
| 1996 |
Guttman DS, Wang PW, Wang IN, Bosler EM, Luft BJ, Dykhuizen DE. Multiple infections of Ixodes scapularis ticks by Borrelia burgdorferi as revealed by single-strand conformation polymorphism analysis. Journal of Clinical Microbiology. 34: 652-6. PMID 8904432 DOI: 10.1128/Jcm.34.3.652-656.1996 |
0.638 |
|
| 1996 |
Wang IN, Dykhuizen DE, Slobodkin LB. The evolution of phage lysis timing Evolutionary Ecology. 10: 545-558. DOI: 10.1007/Bf01237884 |
0.492 |
|
| 1995 |
McGrath BC, Dunn JJ, Gorgone G, Guttman D, Dykhuizen D, Luft BJ. Identification of an immunologically important hypervariable domain of major outer surface protein A of Borrelia burgdorferi. Infection and Immunity. 63: 1356-61. PMID 7890394 DOI: 10.1128/Iai.63.4.1356-1361.1995 |
0.553 |
|
| 1994 |
Guttman DS, Dykhuizen DE. Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science (New York, N.Y.). 266: 1380-3. PMID 7973728 DOI: 10.1126/Science.7973728 |
0.566 |
|
| 1994 |
Guttman DS, Dykhuizen DE. Detecting selective sweeps in naturally occurring Escherichia coli. Genetics. 138: 993-1003. PMID 7896119 |
0.599 |
|
| 1994 |
Dykhuizen DE, Dean AM. Predicted fitness changes along an environmental gradient Evolutionary Ecology. 8: 524-541. DOI: 10.1007/Bf01238256 |
0.537 |
|
| 1993 |
Silva PJN, Dykhuizen DE. THE INCREASED POTENTIAL FOR SELECTION OF THE LAC OPERON OF ESCHERICHIA COLI. Evolution; International Journal of Organic Evolution. 47: 741-749. PMID 28567900 DOI: 10.1111/j.1558-5646.1993.tb01230.x |
0.501 |
|
| 1990 |
Dykhuizen DE, Dean AM. Enzyme activity and fitness: Evolution in solution. Trends in Ecology & Evolution. 5: 257-62. PMID 21232368 DOI: 10.1016/0169-5347(90)90067-N |
0.538 |
|
| 1989 |
Lawrence JG, Dykhuizen DE, DuBose RF, Hartl DL. Phylogenetic analysis using insertion sequence fingerprinting in Escherichia coli. Molecular Biology and Evolution. 6: 1-14. PMID 2564160 DOI: 10.1093/Oxfordjournals.Molbev.A040531 |
0.675 |
|
| 1988 |
Dean AM, Dykhuizen DE, Hartl DL. Fitness effects of amino acid replacements in the beta-galactosidase of Escherichia coli. Molecular Biology and Evolution. 5: 469-85. PMID 3143044 DOI: 10.1093/Oxfordjournals.Molbev.A040513 |
0.7 |
|
| 1988 |
DuBose RF, Dykhuizen DE, Hartl DL. Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 85: 7036-40. PMID 3045828 DOI: 10.1073/Pnas.85.18.7036 |
0.628 |
|
| 1988 |
Miller RD, Dykhuizen DE, Hartl DL. Fitness effects of a deletion mutation increasing transcription of the 6-phosphogluconate dehydrogenase gene in Escherichia coli. Molecular Biology and Evolution. 5: 691-703. PMID 2464736 DOI: 10.1093/Oxfordjournals.Molbev.A040522 |
0.641 |
|
| 1987 |
Sawyer SA, Dykhuizen DE, Hartl DL. Confidence interval for the number of selectively neutral amino acid polymorphisms. Proceedings of the National Academy of Sciences of the United States of America. 84: 6225-8. PMID 3306673 DOI: 10.1073/Pnas.84.17.6225 |
0.602 |
|
| 1987 |
Dykhuizen DE, Dean AM, Hartl DL. Metabolic flux and fitness. Genetics. 115: 25-31. PMID 3104135 |
0.711 |
|
| 1987 |
Sawyer SA, Dykhuizen DE, DuBose RF, Green L, Mutangadura-Mhlanga T, Wolczyk DF, Hartl DL. Distribution and abundance of insertion sequences among natural isolates of Escherichia coli. Genetics. 115: 51-63. PMID 3030884 |
0.608 |
|
| 1986 |
Hartl DL, Dean AM, Dykhuizen DE. The molecular biology of natural selection: reply to burton and place. Genetics. 114: 1037-9. PMID 17246353 |
0.679 |
|
| 1986 |
Dean AM, Dykhuizen DE, Hartl DL. Fitness as a function of beta-galactosidase activity in Escherichia coli. Genetical Research. 48: 1-8. PMID 3096817 DOI: 10.1017/S0016672300024587 |
0.654 |
|
| 1986 |
Hartl DL, Medhora M, Green L, Dykhuizen DE. The evolution of DNA sequences in Escherichia coli. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 312: 191-204. PMID 2870515 DOI: 10.1098/Rstb.1986.0001 |
0.596 |
|
| 1985 |
Dykhuizen DE, Mudd C, Honeycutt A, Hartl DL. POLYMORPHIC POSTTRANSLATIONAL MODIFICATION OF ALKALINE PHOSPHATASE IN ESCHERICHIA COLI. Evolution; International Journal of Organic Evolution. 39: 1-7. PMID 28563640 DOI: 10.1111/J.1558-5646.1985.Tb04075.X |
0.607 |
|
| 1985 |
Hartl DL, Dykhuizen DE, Dean AM. Limits of adaptation: the evolution of selective neutrality. Genetics. 111: 655-74. PMID 3932127 |
0.704 |
|
| 1985 |
Dykhuizen DE, Sawyer SA, Green L, Miller RD, Hartl DL. Joint distribution of insertion elements IS4 and IS5 in natural isolates of Escherichia coli. Genetics. 111: 219-31. PMID 2996976 |
0.6 |
|
| 1984 |
Dykhuizen DE, de Framond J, Hartl DL. Selective neutrality of glucose-6-phosphate dehydrogenase allozymes in Escherichia coli. Molecular Biology and Evolution. 1: 162-70. PMID 6400649 DOI: 10.1093/Oxfordjournals.Molbev.A040309 |
0.631 |
|
| 1984 |
Miller RD, Dykhuizen DE, Green L, Hartl DL. Specific deletion occurring in the directed evolution of 6-phosphogluconate dehydrogenase in Escherichia coli. Genetics. 108: 765-72. PMID 6392014 |
0.62 |
|
| 1984 |
Dykhuizen DE, de Framond J, Hartl DL. Potential for hitchhiking in the eda-edd-zwf gene cluster of Escherichia coli. Genetical Research. 43: 229-39. PMID 6381229 DOI: 10.1017/S0016672300026021 |
0.547 |
|
| 1984 |
Hartl DL, Dykhuizen DE, Berg DE. Accessory DNAs in the bacterial gene pool: playground for coevolution. Ciba Foundation Symposium. 102: 233-45. PMID 6319094 DOI: 10.1002/9780470720837.ch15 |
0.623 |
|
| 1984 |
Hartl DL, Dykhuizen DE. The population genetics of Escherichia coli. Annual Review of Genetics. 18: 31-68. PMID 6099090 DOI: 10.1146/Annurev.Ge.18.120184.000335 |
0.645 |
|
| 1984 |
Green L, Miller RD, Dykhuizen DE, Hartl DL. Distribution of DNA insertion element IS5 in natural isolates of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 81: 4500-4. PMID 6087327 DOI: 10.1073/Pnas.81.14.4500 |
0.601 |
|
| 1983 |
Dykhuizen DE, Hartl DL. Functional effects of PGI allozymes in Escherichia coli. Genetics. 105: 1-18. PMID 6352406 |
0.639 |
|
| 1983 |
Hartl DL, Dykhuizen DE, Miller RD, Green L, de Framond J. Transposable element IS50 improves growth rate of E. coli cells without transposition. Cell. 35: 503-10. PMID 6317194 DOI: 10.1016/0092-8674(83)90184-8 |
0.619 |
|
| 1983 |
Dykhuizen DE, Hartl DL. Selection in chemostats. Microbiological Reviews. 47: 150-68. PMID 6308409 DOI: 10.1128/Mmbr.47.2.150-168.1983 |
0.577 |
|
| 1981 |
Dykhuizen D, Hartl D. EVOLUTION OF COMPETITIVE ABILITY IN ESCHERICHIA COLI. Evolution; International Journal of Organic Evolution. 35: 581-594. PMID 28563589 DOI: 10.1111/J.1558-5646.1981.Tb04919.X |
0.681 |
|
| 1981 |
Hartl DL, Dykhuizen DE. Potential for selection among nearly neutral allozymes of 6-phosphogluconate dehydrogenase in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 78: 6344-8. PMID 7031648 DOI: 10.1073/Pnas.78.10.6344 |
0.639 |
|
| 1980 |
Dykhuizen D, Hartl DL. Selective neutrality of 6PGD allozymes in E. coli and the effects of genetic background. Genetics. 96: 801-17. PMID 7021316 |
0.653 |
|
| 1980 |
Dykhuizen D, Davies M. An Experimental Model: Bacterial Specialists and Generalists Competing in Chemostats Ecology. 61: 1213-1227. DOI: 10.2307/1936839 |
0.385 |
|
| 1980 |
Dykhuizen D, Hartl D. Molecular clockwork (reply) Nature. 287: 90. DOI: 10.1038/287090A0 |
0.554 |
|
| 1979 |
Hartl D, Dykhuizen D. A selectively driven molecular clock. Nature. 281: 230-1. PMID 384266 DOI: 10.1038/281230A0 |
0.648 |
|
| 1978 |
Dykhuizen D, Hartl D. Transport by the lactose permease of Escherichia coli as the basis of lactose killing. Journal of Bacteriology. 135: 876-82. PMID 99437 DOI: 10.1128/JB.135.3.876-882.1978 |
0.549 |
|
| 1973 |
Dykhuizen D. Genetic analysis of the system that reduces biotin-d-sulfoxide in Escherichia coli. Journal of Bacteriology. 115: 662-7. PMID 4579877 DOI: 10.1128/Jb.115.2.662-667.1973 |
0.326 |
|
| 1972 |
Shizuya H, Dykhuizen D. Conditional lethality of deletions which include uvrB in strains of Escherichia coli lacking deoxyribonucleic acid polymerase I. Journal of Bacteriology. 112: 676-81. PMID 4563970 DOI: 10.1128/Jb.112.2.676-681.1972 |
0.334 |
|
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