Tom Chou - Publications

Affiliations: 
Mathematics University of California, Los Angeles, Los Angeles, CA 

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Kim LU, D'Orsogna MR, Chou T. Onset, timing, and exposure therapy of stress disorders: mechanistic insight from a mathematical model of oscillating neuroendocrine dynamics. Biology Direct. 11: 13. PMID 27013324 DOI: 10.1186/s13062-016-0117-6  1
2015 Goyal S, Kim S, Chen IS, Chou T. Mechanisms of blood homeostasis: lineage tracking and a neutral model of cell populations in rhesus macaques. Bmc Biology. 13: 85. PMID 26486451 DOI: 10.1186/s12915-015-0191-8  1
2015 Chang JC, Fok PW, Chou T. Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis. Biophysical Journal. 109: 966-74. PMID 26331254 DOI: 10.1016/j.bpj.2015.07.028  0.76
2015 D'Orsogna MR, Lei Q, Chou T. First assembly times and equilibration in stochastic coagulation-fragmentation Journal of Chemical Physics. 143. DOI: 10.1063/1.4923002  1
2015 Chou T, Wang Y. Fixation times in differentiation and evolution in the presence of bottlenecks, deserts, and oases Journal of Theoretical Biology. 372: 65-73. DOI: 10.1016/j.jtbi.2015.02.021  1
2015 Chang JC, Fok PW, Chou T. Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis Biophysical Journal. 109: 966-973. DOI: 10.1016/j.bpj.2015.07.028  1
2014 Chikere K, Webb NE, Chou T, Borm K, Sterjovski J, Gorry PR, Lee B. Distinct HIV-1 entry phenotypes are associated with transmission, subtype specificity, and resistance to broadly neutralizing antibodies. Retrovirology. 11: 48. PMID 24957778 DOI: 10.1186/1742-4690-11-48  1
2014 Nowroozizadeh S, Cirineo N, Amini N, Knipping S, Chang T, Chou T, Caprioli J, Nouri-Mahdavi K. Influence of correction of ocular magnification on spectral-domain OCT retinal nerve fiber layer measurement variability and performance. Investigative Ophthalmology & Visual Science. 55: 3439-46. PMID 24781941 DOI: 10.1167/iovs.14-13880  1
2014 Chang JC, Chou T. Iterative graph cuts for image segmentation with a nonlinear statistical shape prior. Journal of Mathematical Imaging and Vision. 49: 87-97. PMID 24678141 DOI: 10.1007/s10851-013-0440-9  1
2014 Berenji B, Chou T, D'Orsogna MR. Recidivism and rehabilitation of criminal offenders: a carrot and stick evolutionary game. Plos One. 9: e85531. PMID 24454884 DOI: 10.1371/journal.pone.0085531  1
2014 Chang JC, Savage VM, Chou T. A Path-Integral Approach to Bayesian Inference for Inverse Problems Using the Semiclassical Approximation Journal of Statistical Physics. DOI: 10.1007/s10955-014-1059-y  1
2013 D'Orsogna MR, Zhao B, Berenji B, Chou T. Combinatoric analysis of heterogeneous stochastic self-assembly. The Journal of Chemical Physics. 139: 121918. PMID 24089730 DOI: 10.1063/1.4817202  1
2013 Hosseini H, Nassiri N, Azarbod P, Giaconi J, Chou T, Caprioli J, Nouri-Mahdavi K. Measurement of the optic disc vertical tilt angle with spectral-domain optical coherence tomography and influencing factors. American Journal of Ophthalmology. 156: 737-44. PMID 23891337 DOI: 10.1016/j.ajo.2013.05.036  1
2013 Chikere K, Chou T, Gorry PR, Lee B. Affinofile profiling: how efficiency of CD4/CCR5 usage impacts the biological and pathogenic phenotype of HIV. Virology. 435: 81-91. PMID 23217618 DOI: 10.1016/j.virol.2012.09.043  1
2013 Fok PW, Chou T. Identifiability of Age-Dependent Branching Processes from Extinction Probabilities and Number Distributions Journal of Statistical Physics. 152: 769-786. DOI: 10.1007/s10955-013-0781-1  1
2012 Yvinec R, D'Orsogna MR, Chou T. First passage times in homogeneous nucleation and self-assembly. The Journal of Chemical Physics. 137: 244107. PMID 23277928 DOI: 10.1063/1.4772598  1
2012 Chou T, Siegel M. A mechanical model of retinal detachment. Physical Biology. 9: 046001. PMID 22733081 DOI: 10.1088/1478-3975/9/4/046001  1
2012 D'orsogna MR, Lakatos G, Chou T. Stochastic self-assembly of incommensurate clusters Journal of Chemical Physics. 136. PMID 22380035 DOI: 10.1063/1.3688231  1
2012 Chang JC, Brennan KC, Chou T. Tracking monotonically advancing boundaries in image sequences using graph cuts and recursive kernel shape priors. Ieee Transactions On Medical Imaging. 31: 1008-20. PMID 22156978 DOI: 10.1109/TMI.2011.2178122  1
2011 Chou T, D'Orsogna MR. Coarsening and accelerated equilibration in mass-conserving heterogeneous nucleation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 84: 011608. PMID 21867184 DOI: 10.1103/PhysRevE.84.011608  1
2011 Chou T, Mallick K, Zia RKP. Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport Reports On Progress in Physics. 74. DOI: 10.1088/0034-4885/74/11/116601  1
2010 Gibbons MM, Chou T, D'Orsogna MR. Diffusion-dependent mechanisms of receptor engagement and viral entry. The Journal of Physical Chemistry. B. 114: 15403-12. PMID 21038861 DOI: 10.1021/jp1080725  1
2010 Posta F, Chou T. A mathematical model of intercellular signaling during epithelial wound healing. Journal of Theoretical Biology. 266: 70-8. PMID 20685318 DOI: 10.1016/j.jtbi.2010.05.029  1
2010 Nowak SA, Chakrabarti B, Chou T, Gopinathan A. Frequency-dependent chemolocation and chemotactic target selection. Physical Biology. 7: 026003. PMID 20453297 DOI: 10.1088/1478-3975/7/2/026003  1
2010 Nowak SA, Chou T. Models of dynamic extraction of lipid tethers from cell membranes. Physical Biology. 7: 026002. PMID 20453295 DOI: 10.1088/1478-3975/7/2/026002  1
2010 Fok PW, Chou T. Reconstruction of potential energy profiles from multiple rupture time distributions Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 466: 3479-3499. DOI: 10.1098/rspa.2010.0090  1
2010 Shargel BH, D'Orsogna MR, Chou T. Arrival times in a zero-range process with injection and decay Journal of Physics a: Mathematical and Theoretical. 43. DOI: 10.1088/1751-8113/43/30/305003  1
2009 D'Orsogna MR, Chou T. Optimal cytoplasmic transport in viral infections. Plos One. 4: e8165. PMID 20046829 DOI: 10.1371/journal.pone.0008165  1
2009 Johnston SH, Lobritz MA, Nguyen S, Lassen K, Delair S, Posta F, Bryson YJ, Arts EJ, Chou T, Lee B. A quantitative affinity-profiling system that reveals distinct CD4/CCR5 usage patterns among human immunodeficiency virus type 1 and simian immunodeficiency virus strains. Journal of Virology. 83: 11016-26. PMID 19692480 DOI: 10.1128/JVI.01242-09  1
2009 Chou T. Enhancement of charged macromolecule capture by nanopores in a salt gradient. The Journal of Chemical Physics. 131: 034703. PMID 19624217 DOI: 10.1063/1.3170952  1
2009 Posta F, D'Orsogna MR, Chou T. Enhancement of cargo processivity by cooperating molecular motors. Physical Chemistry Chemical Physics : Pccp. 11: 4851-60. PMID 19506760 DOI: 10.1039/b900760c  1
2009 Fok PW, Chou T. Accelerated search kinetics mediated by redox reactions of DNA repair enzymes. Biophysical Journal. 96: 3949-58. PMID 19450467 DOI: 10.1016/j.bpj.2009.02.062  1
2009 Lassen KG, Lobritz MA, Bailey JR, Johnston S, Nguyen S, Lee B, Chou T, Siliciano RF, Markowitz M, Arts EJ. Elite suppressor-derived HIV-1 envelope glycoproteins exhibit reduced entry efficiency and kinetics. Plos Pathogens. 5: e1000377. PMID 19360131 DOI: 10.1371/journal.ppat.1000377  1
2009 Nowak SA, Chou T. Mechanisms of receptor/coreceptor-mediated entry of enveloped viruses. Biophysical Journal. 96: 2624-36. PMID 19348746 DOI: 10.1016/j.bpj.2009.01.018  1
2009 Fok PW, Chou T. Interface growth driven by surface kinetics and convection Siam Journal On Applied Mathematics. 70: 24-39. DOI: 10.1137/070710354  1
2009 Shargel BH, Chou T. Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains Journal of Statistical Physics. 137: 165-188. DOI: 10.1007/s10955-009-9836-8  1
2008 Fok PW, Guo CL, Chou T. Charge-transport-mediated recruitment of DNA repair enzymes. The Journal of Chemical Physics. 129: 235101. PMID 19102557 DOI: 10.1063/1.3026735  1
2008 Nowak SA, Chou T. Membrane lipid segregation in endocytosis. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 021908. PMID 18850866 DOI: 10.1103/PhysRevE.78.021908  1
2008 Kim KS, Chou T, Rudnick J. Degenerate ground-state lattices of membrane inclusions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 011401. PMID 18763950 DOI: 10.1103/PhysRevE.78.011401  1
2007 D'Orsogna MR, Chou T, Antal T. Exact steady-state velocity of ratchets driven by random sequential adsorption. Journal of Physics a: Mathematical and General. 40: 5575-5584. PMID 19081764 DOI: 10.1088/1751-8113/40/21/009  1
2007 Lakhanpal A, Chou T. Brownian ratchets driven by asymmetric nucleation of hydrolysis waves. Physical Review Letters. 99: 248302. PMID 18233496 DOI: 10.1103/PhysRevLett.99.248302  1
2007 Chou T. Peeling and sliding in nucleosome repositioning. Physical Review Letters. 99: 058105. PMID 17930799 DOI: 10.1103/PhysRevLett.99.058105  1
2007 Nowak SA, Fok PW, Chou T. Dynamic boundaries in asymmetric exclusion processes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 031135. PMID 17930227 DOI: 10.1103/PhysRevE.76.031135  1
2007 Chou T, D'Orsogna MR. Multistage adsorption of diffusing macromolecules and viruses. The Journal of Chemical Physics. 127: 105101. PMID 17867780 DOI: 10.1063/1.2764053  1
2007 Chou T. Stochastic entry of enveloped viruses: fusion versus endocytosis. Biophysical Journal. 93: 1116-23. PMID 17513379 DOI: 10.1529/biophysj.107.106708  1
2007 Chou T. Band gaps and the Kelvin-Helmholtz instability. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 75: 016315. PMID 17358261 DOI: 10.1103/PhysRevE.75.016315  1
2006 Lakatos G, O'Brien J, Chou T. Hydrodynamic mean-field solutions of 1D exclusion processes with spatially varying hopping rates Journal of Physics a: Mathematical and General. 39: 2253-2264. DOI: 10.1088/0305-4470/39/10/002  1
2005 D'Orsogna MR, Chou T. First passage and cooperativity of queuing kinetics. Physical Review Letters. 95: 170603. PMID 16383812 DOI: 10.1103/PhysRevLett.95.170603  1
2005 Lakatos G, Chou T, Bergersen B, Patey GN. First passage times of driven DNA hairpin unzipping. Physical Biology. 2: 166-74. PMID 16224122 DOI: 10.1088/1478-3975/2/3/004  1
2005 Lakatos G, Chou T, Kolomeisky A. Steady-state properties of a totally asymmetric exclusion process with periodic structure. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 011103. PMID 15697576 DOI: 10.1103/PhysRevE.71.011103  1
2005 D'Orsogna MR, Chou T. Interparticle gap distributions on one-dimensional lattices Journal of Physics a: Mathematical and General. 38: 531-542. DOI: 10.1088/0305-4470/38/3/001  1
2004 Chou T, Lakatos G. Clustered bottlenecks in mRNA translation and protein synthesis. Physical Review Letters. 93: 198101. PMID 15600884 DOI: 10.1103/PhysRevLett.93.198101  1
2004 Klapstein K, Chou T, Bruinsma R. Physics of RecA-mediated homologous recognition. Biophysical Journal. 87: 1466-77. PMID 15345529 DOI: 10.1529/biophysj.104.039578  1
2004 Foster WJ, Chou T. Physical mechanisms of gas and perfluoron retinopexy and sub-retinal fluid displacement. Physics in Medicine and Biology. 49: 2989-97. PMID 15285260 DOI: 10.1088/0031-9155/49/13/015  1
2004 Chou T. Water alignment, dipolar interactions, and multiple proton occupancy during water-wire proton transport. Biophysical Journal. 86: 2827-36. PMID 15111400 DOI: 10.1016/S0006-3495(04)74335-0  1
2004 D'Orsogna MR, Chou T. Chiral molecule adsorption on helical polymers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 021805. PMID 14995481 DOI: 10.1103/PhysRevE.69.021805  1
2004 Bal G, Chou T. On the reconstruction of diffusions from first-exit time distributions Inverse Problems. 20: 1053-1065. DOI: 10.1088/0266-5611/20/4/004  1
2003 D'Orsogna MR, Suchard MA, Chou T. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 021925. PMID 14525024 DOI: 10.1103/PhysRevE.68.021925  1
2003 Chou T. Ribosome recycling, diffusion, and mRNA loop formation in translational regulation. Biophysical Journal. 85: 755-73. PMID 12885626 DOI: 10.1016/S0006-3495(03)74518-4  1
2003 Chou T. An exact theory of histone-DNA adsorption and wrapping Europhysics Letters. 62: 753-759. DOI: 10.1209/epl/i2003-00437-y  1
2003 Lakatos G, Chou T. Totally asymmetric exclusion processes with particles of arbitrary size Journal of Physics a: Mathematical and General. 36: 2027-2041. DOI: 10.1088/0305-4470/36/8/302  1
2002 Chou T. An interacting spin-flip model for one-dimensional proton conduction Journal of Physics a: Mathematical and General. 35: 4515-4526. DOI: 10.1088/0305-4470/35/21/302  1
2002 Bal G, Chou T. Capillary-gravity wave transport over spatially random drift Wave Motion. 35: 107-124. DOI: 10.1016/S0165-2125(01)00082-8  1
2001 Chou T. Geometry-dependent electrostatics near contact lines Physical Review Letters. 87: 106101. PMID 11531488  1
2001 Chou T, Kim KS, Oster G. Statistical thermodynamics of membrane bending-mediated protein-protein attractions Biophysical Journal. 80: 1075-1087. PMID 11222274  1
2001 McGee MP, Chou T. Surface-dependent coagulation enzymes. Flow kinetics of factor Xa generation on live cell membranes Journal of Biological Chemistry. 276: 7827-7835. PMID 11108710 DOI: 10.1074/jbc.M003275200  1
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